Phylogenetic Timing of the Fish-Specific Genome Duplication Correlates with the Diversification of Teleost Fish

For many genes, ray-finned fish (Actinopterygii) have two paralogous copies, where only one ortholog is present in tetrapods. The discovery of an additional, almost-complete set of Hox clusters in teleosts (zebrafish, pufferfish, medaka, and cichlid) but not in basal actinopterygian lineages (Polypterus) led to the formulation of the fish-specific genome duplication hypothesis. The phylogenetic timing of this genome duplication during the evolution of ray-finned fish is unknown, since only a few species of basal fish lineages have been investigated so far. In this study, three nuclear genes (fzd8, sox11, tyrosinase) were sequenced from sturgeons (Acipenseriformes), gars (Semionotiformes), bony tongues (Osteoglossomorpha), and a tenpounder (Elopomorpha). For these three genes, two copies have been described previously teleosts (e.g., zebrafish, pufferfish), but only one orthologous copy is found in tetrapods. Individual gene trees for these three genes and a concatenated dataset support the hypothesis that the fish-specific genome duplication event took place after the split of the Acipenseriformes and the Semionotiformes from the lineage leading to teleost fish but before the divergence of Osteoglossiformes. If these three genes were duplicated during the proposed fish-specific genome duplication event, then this event separates the species-poor early-branching lineages from the species-rich teleost lineage. The additional number of genes resulting from this event might have facilitated the evolutionary radiation and the phenotypic diversification of the teleost fish.[Reviewing Editor: Martin Kreitman]     

Length–weight relationships of three fish species from Liaodong Bay,Bohai Sea,China

Length–weight relationships (LWRs) in the present study were determined for three fish species: Collichthys niveatus Jordan & Starks, 1906; Ctenotrypauchen chinensis Steindachner, 1867 and Liparis tanakae (Gilbert & Burke, 1912), collected from Liaodong Bay, Bohai Sea, China using bottom trawl nets from June to August 2014. The b parameters in the fitted LWRs for the three fish species were 2.882, 2.991 and 3.353, respectively. A new maximum total length (15.6 cm) for C. chinensis was recorded. The LWRs for the three fish species are first reported in FishBase.     

Mosquito oviposition and larvae development in response to kairomones originated by different fish

Predator‐released kairomones indicating the presence of predatory fish are known to alter the behaviour and life‐history traits of several aquatic herbivores. Culex mosquitoes (Diptera: Culicidae) respond to such cues by altering oviposition habitat selection and larval development time. These responses differ among fish species indicating composition differences among fish‐released cues, but the recognition pattern is not clear. This study tested the dependence of fish recognition to co‐evolution and the level of threat to larvae. We compared Culex responses to three fish, the invasive larvivorous Gambusia affinis (Cyprinodontiformes: Poeciliidae), the native larvivorous Aphanius mento (Cyprinodontiformes: Cyprinodontidae) and the native algivorous Garra rufa (Cypriniformes: Cyprinidae). The effects of cues released by the three fish on Culex oviposition and life‐history shifts were compared in field mesocosms and lab tests. Our results showed that ovipositing females were significantly repelled only by cues originated from G. affinis, while developing larvae response was a more general one. Our results support the idea that fish‐released kairomones differ in composition or quantities among different species.     

Selective feeding by three native North American freshwater mussels implies food competition with zebra mussels

The response of a benthic macroinvertebrate assemblage to whole-lake biomanipulation was studied in a small Finnish mesotrophic lake. From 1993 to 1997, over 200 kg ha^–1 of fish, mainly roach (Rutilus rutilus (L.)) and bream (Abramis brama (L.)) were caught and the fish biomass was reduced by nearly 80%. The biomass and density of benthic invertebrates were investigated during the years of fish removal and for the following three years. The decrease in benthivorous fish stock led to a higher biomass and density of all major groups of benthic invertebrates during the early years of fish removal. Non-biting midges (Chironomidae), water mites (Hydrachnellae), mayfly nymphs (Ephemeroptera), sphaeriid clams (Bivalvia: Sphaeridae) and biting midges (Ceratopogonidae) seemed to respond most profoundly to changes in fish biomass. The biomass of most invertebrate groups correlated negatively with the catch-per-unit-effort (CPUE). The total biomass and density of invertebrates had strong negative correlations with the CPUE (r= -0.85, p = 0.016, r = -0.84, p = 0.019, respectively), but they did not correlate significantly with total phosphorus, chlorophyll a, or temperature. However, the variation in total biomass that was not explained by the CPUE, was significantly associated with total phosphorus.The fish stock recovered to almost its initial level within three years after fish removal had been discontinued. As an apparent response to increased predation pressure, the biomasses of many invertebrate groups decreased again in the years 1999–2000. The strong relationship between macrozoobenthos and fish populations in the studied lake is likely to be a consequence of the open and sparsely vegetated bottom, which offers minimal shelter to invertebrate prey. An additional factor behind the recent low biomass levels may be changes in primary production. Phosphorus and chlorophyll a concentrations started to decrease markedly after three years of fishing and they have remained at a low level.     

Egg identification of three economical important fish species using DNA barcoding in comparison to a morphological determination

Accurate identification of fish eggs to species level is a challenging task as many species have similar egg sizes and morphology. The results of egg determination of three economically important fish species are presented by using DNA barcoding in comparison to the classical morphological determination. About 500 fish eggs from the Celtic Sea were collected, morphologically identified and used for DNA analysis. In total, DNA barcodes were successfully obtained from 98% of the investigated eggs, including 167 DNA barcodes from 169 morphologically identified fish eggs of Merluccius merluccius (98.8%), 257 of 262 Scomber scombrus (98.1%), and 47 from 50 Trachurus trachurus (94%). Overall, species identification with DNA barcodes showed a congruence of 96.2% to identification by morphology, whereas 3.8% (n = 18) of the analyzed eggs were morphologically assigned to the wrong species. The highest number of incorrect identified eggs was for S. scombrus (n = 15). Our study highlights the usefulness of DNA barcoding for valid fish egg identification but also indicates the robustness of the classical morphology‐based approach.     

Length‐weight relationships of three cyprinid fish species from southwestern China

Length–weight relationships (LWRs) were determined for three cyprinid fish species [Acrossocheilus yunnanensis (Regan, 1904), Onychostoma simum (Sauvage & Dabry de Thiersant, 1874) and Spinibarbus sinensis (Bleeker, 1871)] from southwestern China. Samples were obtained with various fishing gear (set nets, drift gill nets, fish cages, hook and electrofishing). Prior to this study, the LWRs for these three species (A. yunnanensis, O. simum and S. sinensis) were unknown.     

Length‐weight relationships of three fish species from the coastal waters of Yellow Sea,China

Length–weight relationships (LWRs) were determined for three fish species: Zebrias zebrinus (Temminck & Schlegel, 1846), Setipinna termuifilis (Valenciennes, 1848) and Pampus echinogaster (Basilewsky, 1855). Samples were collected from the coastal waters of Yellow Sea, China, from early April to mid–April 2017 using bottom trawl nets (20 mm stretched mesh size of cod‐end) and set nets (15.6 mesh size). The values of exponent b in the fitted LWRs ranged from 3.101 to 3.427 for three fish species.     

Fish assemblage of a traditional fishery and the seasonal variations in diet of its most abundant species Wallago attu (Siluriformes: Siluridae) from a tropical floodplain

The fish assemblage of a traditional Kata fishery and the stomach contents of Wallago attu were studied over a period of one year from a large floodplain system in Bangladesh. A total of 19 species of fish and 2 species of shrimp were recorded. W. attu (9.7–17.8%), Mystus vittatus (6.0–11.3%), M. aor (5.0–12.1%), Amblypharyngodon mola (4.4–9.3%) and Mastacembelus armatus (3.5–10.5%) dominated the catch. W.␣attu occupied the top position in abundance throughout the year, followed by M. vittatus and M. aor. Bagridae, Siluridae and Cyprinidae were three major families that contributed respectively 21.0, 17.4 and 16.1% of the total catch. Considerable seasonality was observed in the abundance of different fishes. A total of 14 different prey items were recorded, belonging to three major groups (fish, prawn and plant matters). The fish fed on at least eight species of small fishes (A. mola, M. vittatus, M. cavasius, Puntius stigma, P. ticto, Puntius sp., Glossogobius guris, and Heteropneustes fossilis) and some other unidentified small fishes. Other major prey items were small prawn, fish and prawn remains, and macroalgae. A. mola was the most important food item, contributing 23.7% of the total amount of diet by weight and 19.9% by frequency of occurrence. A. mola was followed by unidentified small prawn (13.7%), M. vittatus (13.1%), and unidentified small fishes (8.8%) by weight and by unidentified small fishes (15.9%), fish remains (12.5%), and M.␣vittatus (12.3%) by occurrence. Of the major diet categories, fish contributed 74.3% of the total diet by weight and 80.9% by occurrence, prawn contributed 18.5% by weight and 11.0% by occurrence and plants contributed 7.2% by weight and 8.1% by occurrence. A. mola and small shrimps were positively selected by W. attu. We concluded that W. attu is a piscivorous predator with potential impacts on prey fish communities; we also hypothesized that a specialized food-web based on the Kata fishery exists in and around the Katas which is of particular ecological significance.     

Abundance and species richness as a function of food resources and vegetation structure: juvenile fish assemblages in rivers

Availability of food and habitat complexity are two factors generally invoked to explain the high density of fish in vegetated habitats. The role of food resources (zooplankton) and habitat complexity (expressed by a vegetation structural index) in determining juvenile fish abundance and fish species richness in three morphologically contrasted macrophyte types (Sagittaria, Ceratophyllum and Nuphar) was studied for a large, lowland river.
Our results showed that fish abundance increased with food availability, and was maximal for intermediate values of vegetation complexity. Food resources and vegetation complexity did not, however, explain the higher juvenile fish abundance observed in Sagittaria beds. We suggested that plant growth form, acting on fish foraging success and risk of predation, might influence patterns of juvenile fish distribution.
Species‐abundance relationships were similar among the three macrophyte types, but relationships between number of fish species (fish richness) and number of samples differed. Fish richness in terms of total number of fish species found at each sampling point showed the same pattern as for fish abundance: it increased with food availability and was highest at intermediate vegetation complexities. However, since both fish abundance and fish richness responded in the same manner to food availability and vegetation complexity, we were not able to distinguish statistically any effect for the specific fish richness formulated by the number of fish species per unit fish abundance. The current paradigm that structural complexity of vegetation provides a wider range of niches, increasing species diversity, was thus not verified. This finding indicates a simple species‐abundance relationship (the passive sampling hypothesis), and suggests that no special mechanism acts directly on fish species richness.     

Effects of two parasites, Schistocephalus solidus (Cestoda) and Bunodera spp. (Trematoda), on the escape fast-start performance of three-spined sticklebacks

The fast‐start performance of three‐spined sticklebacks Gasterosteus aculeatus infected with Schistocephalus solidus and Bunodera spp. was determined and two distinct fast‐start responses (A and B) were observed. ‘A’ starts were of higher flexibility than B and three‐way ANOVA showed significant effects of A and B starts (P < 0·05), time (P < 0·05) and per cent standard body length, L_S (P < 0·05) on the orientation angle (angle of an individual segment of the fish with respect to the direction of travel). Schistocephalus solidus infection reduced maximum velocity (P < 0·05) and maximum acceleration (P < 0·05) of infected fish. Uninfected fish and fish infected with S. solidus up to a parasite index (parasite mass divided by the sum of fish and parasite mass) of 0·1 executed both types. Infected fish exclusively executed B starts for parasite index between 0·1 and 0·2. This was not due to a reduction in body flexibility associated with mechanical obstruction caused by S. solidus as no significant difference in the ratios of body width (P > 0·05) or depth (P > 0·05) to L_S were found between uninfected and infected fish. At a parasite index >0·2, infected fish were unable to perform escape fast‐starts increasing the likelihood of predation by their definitive hosts such as loons or belted kingfishers. Three‐spined sticklebacks infected with S. solidus with a parasite index of c. 0·2–0·3, however, were compromised by a suite of behavioural (e.g. increased foraging activity and amount of food consumed, increased risk associated with feeding and increased response latency to predatory stimuli), physiological (e.g. increased rate of oxygen consumption, slower growth, delayed sexual maturation and breeding success) and biomechanical (e.g. decreased fast‐start performance) factors. Bunodera spp. did not affect the escape fast‐start performance of three‐spined sticklebacks and no significant difference for maximum velocity (P > 0·05) and maximum acceleration (P > 0·05) was found.     

Length–weight relationships of three fish species from the South China Sea

The length–weight relationships were determined for three fish species: Histiopterus typus (Temminck & Schlegel, 1844), Branchiostegus argentatus (Cuvier, 1830), and Ilisha elongata (Anonymous [Bennett], 1830). Samples were collected from the South China Sea with commercial trawls in June 2016 using trawl nets. Prior to this study the length–weight relationships for these three species were unknown.     

Growth rate of tank-reared Mediterranean amberjack, Seriola dumerili (Risso 1810) fed on three different diets

Mediterranean amberjack Seriola dumerili (Risso 1810) has aquaculture potential. The growth rate and food conversion ratio of S. dumerili on three different types of food (A: 100% frozen sardines; B: 50% frozen sardines and 50% pellet; C: 100% pellet) were measured, and analysed with respect to temperature, condition index and chemical composition of the fish fillet. Wild S. dumerili, average body weight 248 g and average total length 26.9 cm were caught in August and September 1994 in the South Adriatic Sea near Dubrovnik, Croatia and kept in three tanks (n=15 in each tank; duration of experiment, 226 days). The fish that were fed on diet A [initial weight, 252 ± 71 g; total length (TL), 24.3 ± 2.6 cm] started feeding immediately; however, fish assigned to diet C began to feed entirely on the pelleted diet 1 month after the start of the experiment. The mortality of fish fed on diet A was negligible, the registered growth rate was 313 ± 74 g (124.2%), specific growth rate was 0.32% day^?1 and the food conversion rate was 6.7. The fish fed on diet B (initial weight, 246 ± 74 g; TL, 28.2 ± 2.5 cm) started to feed on day 3 and achieved a total growth rate of about 98% (final weight gain, 241 ± 69 g) and specific growth rate of 0.24% day^?1 (feed conversion rate of 9.00 and mortality 13%). The fish fed on diet C (initial weight, 246 ± 74 g; TL, 28.2 ± 2.5 cm) started to feed on the pellets after 1 month and had a growth rate of 87% (weight gain 214 ± 85 g), a specific growth rate of 0.24% day^?1 and a food conversion rate of 10.6 with considerable mortality (27%). In all three diet groups the fish grew with considerable variation in food consumption and growth rate, depending on seasonal temperature variations of the ambient sea water supplied to the rearing tanks. Chemical analysis showed that the protein level (amount) in the fish meat exceeded 20% in all three fish fillet samples.     

The Diversity of Bacterial Communities Associated with Atlantic Cod <Emphasis Type="Italic">Gadus morhua</Emphasis>

The spatial and temporal changes in the bacterial communities associated with the Atlantic cod Gadus morhua were investigated using terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S recombinant DNA (rDNA). Epidermal mucous was sampled from 366 cod caught in three harvest locations (Baltic, Icelandic, and North Seas) over three seasons (spring 2002, autumn 2002, and spring 2003), and an automated method for the high-throughput processing of environmental samples was developed using a Qiagen BioRobot. The analysis revealed that a diverse consortium of bacteria were found on fish; γ-proteobacteria and Cytophaga–Flavobacter–Bacteroides (CFB) species were dominant. T-RFLP peak profiles suggested that operational taxonomic units (OTUs) related to Photobacterium sp., Psychrobacter sp., and Bacteroides sp. were common to all sites in all three seasons, but there were intersite variations in community composition. Cod caught from different seas had distinct reproducible bacterial assemblages. Whereas communities from fish caught in the Baltic and Icelandic Seas were relatively stable over the three seasons, those from fish from the North Sea changed significantly over time.     

Length–weight relationships of three fish species from the Tibet reach of the Lancang River,China

Length‐weight relationships (LWRs) were determined for three fish species, Schizothorax lantsangensis (Tsao, 1964), Schizothorax lissolabiatus (Tsao, 1964) and Schizopygopsis anteroventris (Wu & Tsao, 1989), from the Tibet reach of the Lancang River, China (N 29°06′–31°30′, E 96°57′–98°38′). Specimens were collected in April and September 2017. The specimens were caught with drifting gillnets (mesh size 2.5 cm and 7.0 cm). The b values of these three fish species ranged from 2.974 to 3.075. The high r² values (all > .980) indicate that these relationships will be appropriate for use in fisheries management of these species.     

Food habits and prey selection of three species of groupers from the genus Cephalopholis (Serranidae: Teleostei)

Synopsis This paper describes a study performed in the Gulf of Aqaba on food selectivity and hunting behaviour of three species of sympatric fish from the genusCephalopholis. These fishes occur in the shallow-water coral habitats of the Red Sea and feed on fishes and invertebrates. Of these,C. argus andC. miniata prefer selected fish species (95 and 86% of their diet respectively), whereasC. hemistiktos consumes more invertebrates (36%) and is less selective with respect to fish species. All three species employ various techniques to catch their prey and in situations where their elected food is absent they readily switch to substitute prey species.     

The assessing of Pacific oyster (Crassostrea gigas) rearing performances by the IFREMER/REMORA network: method and first results (1993–98) in Brittany (France)

Parasitological monitoring was carried out from 1997 to 1999 in a highly saline (41–45 g/l) lake in southeastern California, Salton Sea. A total of 1473 fishes were examined. Young tilapia, Oreochromis mossambicus, croaker, Bairdiella icistia, and mudsucker, Gillichthys mirabilis, were found infected by ectoparasites. Some persistent foci of fish infestations were found around the perimeter of the lake. The diversity of parasites was limited to three protozoan species, Amyloodinium ocellatum (Dinoflagellida), Ambiphrya ameiuri (Peritricha), Cryptobia branchialis (Bodonida: Kinetoplastida), and two metazoans, the monogeneans Gyrodactylus olsoni and G. imperialis. Both A. ocellatum and A. ameiuri infested fish from spring through fall. The greatest infestations occurred in summer (29–40°C) in the case of A. ocellatum and in spring and autumn (22–27°C) in the case of A. ameiuri. High parasite loads caused severe damage to such respiratory organs as gills and skin. They may depress respiration and osmoregulation and, in combination with other environmental factors, cause fish suffocation and death. These parasites may play a major role in juvenile fish mortality.     

Characterization of chemical defenses in ranid tadpoles against a fish predator

Tadpoles of some ranid species appear to possess chemical defenses against fish predators, but the chemicals have not been characterized. Here, we evaluated the vulnerability of three Japanese anuran tadpole species (Glandirana rugosa, Pelophylax nigromaculatus, and Hyla japonica) to a fish (Gnathopogon elongatus elongatus) and analyzed the defensive chemicals extracted from the unpalatable tadpoles. Additionally, we examined the defensive behavior of unpalatable tadpoles in response to fish chemical cues. The fish rejected both G. rugosa (83%) and P. nigromaculatus (48%), but not H. japonica (0%). Many of the rejected tadpoles survived (60–80%). Possible defensive chemicals were extracted by methanol from the skin of G. rugosa, but were not identifiable by gas chromatography–mass spectrometry because of small quantities. The chemicals have high polarity and non-volatility. When exposed to fish chemical cues, P. nigromaculatus decreased activity presumably as a defensive behavior, but G. rugosa did not. We demonstrated the presence of chemical defenses in at least two of these species and revealed that G. rugosa releases more effective or greater amounts of defense chemicals than P. nigromaculatus with respect to this fish predator. The increased efficacy of chemical defenses may correlate with decreasing defensive behavior.     

Planktivory in Pagothenia borchgrevinki (Pisces: Nototheniidae) in McMurdo sound,Antarctica

Summary Specimens of the Antarctic fish P. borchgrevinki were collected from just beneath the sea-ice in McMurdo Sound over the period 8 November to 6 December, 1985. The stomach contents of 200 fish were analysed and compared with the co-occurrence of the prey species in the plankton. Numerically, the dominant prey was a thecosomatid pteropod Limacina helicina (83%), followed by a hyperiid amphipod Hyperiella dilatata (5%). Other prey species in decreasing order of occurrence were Euphausia crystallorophias, Euchaeta antarctica, other copepods, a decapod crustacean larva, chaetognaths, the amphipods Orchomene plebs and Epimiriella macronyx, and unidentified juvenile fish. The order of frequency of occurrence of these prey in the guts of all the fish was H. dilatata (in 73% of the fish), L. helicina (71%), calanoid copepods (55%), chaetognaths (51%), E. crystallorophias (42%), decapod crustacean larva (32%), O. plebs (27%), juvenile fish (20%), and E. macronyx (14%). In volumetric terms, the dominant diet contributors were O. plebs (38%), L. helicina (17%) and chaetognaths (15%). All prey except O. plebs and E. macronyx were taken in concurrent plankton samples. Although planktivory of Pagothenia borchgrevinki is confirmed, it is not certain whether feeding is confined to the immediate sub-ice environment.     

A functional model for maximum growth of immature stone loach, Barbatula barbatula, from three populations in north-west England

1. The chief objective was to develop a functional model for growth of stone loach, Barbatula barbatula, using immature fish from three populations. The growth model had been developed previously for brown trout, Salmo trutta, but new estimates of the five parameters for the stone loach had to be obtained from laboratory experiments. 2. Fish from four size groups (initial arithmetic mean live weights 0.053 g, 0.231 g, 0.840 g, 1.612 g, with five fish per group) from Great Oaks Wood Beck were acclimatized to constant temperatures of either 3, 5, 10, 15, 20 or 25 °C. Each fish was kept in a separate tank and fed to satiation on freshwater shrimps. Weights and lengths of each fish were recorded at the start and finish of a growth period of 35 days. For each of the other populations (Black and Ford Wood Becks), there were only three temperatures (5, 10, 20 °C) with ten fish per temperature. 3. The growth model was an excellent fit (P < 0.001, R² > 0.99) for the 120 fish from Great Oaks Wood Beck. Growth rates were negative at 3 °C, close to zero at 5 and 25 °C, and positive at 10, 15 and 20 °C, with an optimum value of 19 °C. When growth rates were positive, they decreased markedly with increasing fish weight for small fish but decreased more slowly for larger fish. At the start of the experiments, weight–length relationships were similar for fish from all three populations and were well described by a power function. There was excellent agreement between growth rates estimated from the fitted growth model for fish from Great Oaks Wood Beck and values obtained for fish from Black and Ford Wood Becks. Data from all three populations were therefore pooled (n = 180) to obtain new estimates of the five parameters in the model. 4. Comparisons between parameter estimates for trout and stone loach showed that the latter grew better in warmer waters (e.g. optimum value for growth was 19.0 °C for stone loach and 13.1 °C for trout, with ranges for growth of 5.0–25.0 °C and 3.6–19.5 °C, respectively).