Microbial population structure in a stratified,acidic pit lake in the Iberian Pyrite Belt

Abstract

We examined the geochemistry and bacterial and archaeal community structure in the acidic (pH < 2.4) pit lake at Peña de Hierro, near the headwaters of the Río Tinto. The lake has strong vertical gradients in light, O₂, pH, conductivity, and dissolved ions. Bacterial and archaeal communities between 0 and 32?m displayed low species richness and evenness. Relatives of iron cycling taxa accounted for 60-90% of the operational taxonomic units (OTUs) throughout the water column. Relatives of heterotrophic, facultative Fe(III)-reducing species made up more than a third of the bacterial and archaeal community in the photic zone. Taxa related to Fe(II) oxidizers Ferrithrix thermotolerans and Acidithix ferrooxidans were also abundant in the photic zone. Below the photic zone, relatives of the lithoautotrophic Fe(II) oxidizers Leptospirillum ferrooxidans and Ferrovum myxofaciens bloomed at different depths within or just below the oxycline. Thermoplasmatales predominated in the deep, microoxic zone of the lake. The microbial population structure of the lake appears to be influenced by the production of oxygen and organic matter by phototrophs in a narrow zone at the lake surface and by strong geochemical gradients present in the water column that create distinct niches for separate Fe(II) oxidizers.     

Microeukaryotic diversity in the extreme environments of the Iberian Pyrite Belt: a comparison between universal and fungi-specific primer sets, temperature gradient gel electrophoresis and cloning

The Iberian Pyrite Belt extends from Portugal to Spain and is one of the most important pyrite regions in the world. Its aquatic reservoirs display extreme conditions characterized by low pH and high concentrations of heavy metals. In this study, the diversity of microeukaryotes was analysed at the abandoned mines of S?o Domingos (Portugal) and at Rio Tinto (Spain). DNA was extracted from water samples and a set of eukaryotic universal primers directed to the small subunit rRNA genes (rDNA) was used. The amplicons were analysed by molecular cloning and temperature gradient gel electrophoresis (TGGE). In addition, a fungi-specific primer set was also used in TGGE experiments. The fungi-specific primers contributed to a substantial increase in the number of fungal taxa found due, probably, to the relative low density of fungal structures. Several microorganisms, belonging (or closely related) to the ascomycetous yeast Pichia acaciae, the basidiomycetous yeasts Cryptococcus humicola and Cystofilobasidium bisporidii, the green algae Chlamydomonas noctigama and Chlorella protothecoides var. acidicola and some uncultured microeukaryotes were present at both localities, which suggests that specific microorganisms are adapted to the peculiar conditions of the Iberian Pyrite Belt extreme environments. However, in spite of the similarities, a higher algal richness was observed at S. Domingos, whereas for R. Tinto the richness of fungi was more prominent.     

Environmental Assessment of the Caveira Abandoned Mine (Southern Portugal): Part 1: Characterization of Metal Contaminated Soil

Mine activity in Portugal had a huge impact on the growth of the regions where it took place, like in the Iberian Pyrite Belt. Nowadays, most of these mines are abandoned, as is the case for the Caveira mine. Soil geochemistry indicates that high contents of Cu, Pb, Zn, As, Cd, and Hg occur in the soils collected near the tailings. Multiple Correspondence Analysis identifies two areas with high concentrations of Pb, As, Hg, Sb, Mo, and Tl. However, the results suggest a different geochemistry for each of the areas. The non-site-specific methods (Hazard Index and GLC guidelines) classify all the areas as contaminated. Metal fractionation in the soil phases is different for the several elements studied. The articulation of the metal fractionation results with the GLC guidelines reduces the area of soil contaminated by Pb, but not by As.     

Metal pollution in water environment and the associated human health risk from drinking water: A case study of Sukinda chromite mine,India

Sukinda is one of the most polluted regions of the globe due to chromium pollution. The study sheds light into the heavy metal pollution around the mining area and its effect on the health of the resident populace. The Cr(VI) was in the range of 0.027–2.48 mg/L in surface water and BDL–1.35 mg/L in the groundwater. Multivariate analysis revealed that mining activity was the main source of TCr, Cr(VI), and Zn in the surface water that warrants attention. Heavy metal evaluation index showed high levels of Fe, Mn, and Cr in groundwater that can pose serious threat to the exposed population. Cancer and non-cancer risk of Cr(VI) was higher than other metals in groundwater. The results revealed that the total cancer risk was 1.21E-03 and 1.05E-03 in adults and children, respectively, which exceeded the USEPA acceptable cancer health risk. High health risk was observed through oral intake of water, while both cancer and non-cancer risks were negligible through dermal contact. This study strongly advocates proper periodic assessment of drinking as well as surface water in the area and regulation to restrict the use of contaminated water for daily use.     

Evaluation of PAHs concentration and cancer risk assessment on human health in a roadside soil: A case study

Abstract

An explanatory study was carried out to divulge the sources, contamination level of different classes of Polycyclic Aromatic Hydrocarbons (PAHs) distribution and the impact of vehicular traffic on the roadside soil by assessing incremental lifetime cancer risk at each site to understand the potential health risk of nearby residents along the National Highway-2 Delhi–Kolkata India. Comparison of the cancer risk assessment was performed using Monte Carlo simulation for the entire study area. The results revealed 90% cancer risk value of 6.40?×?10^?5 and 6.5?×?10^?5 for children and adults, respectively, whereas, without simulation the Total Cancer Risk (TCR) for adults was 6.925?×?10^?5 and 6.220?×?10^?5 for children, observed maximum at the location (S5). The dilemma of risk assessment indicating profoundly contaminated soil. Comparison of PAHs concentration with the background values of PAHs ranged from 1.478 to 27.493?mg kg^?1. The (IP/BgP) ratio specified that the PAHs content of the highway roadside sample is preponderate by diesel vehicle emission, biomass combustion and coal combustion. The study clearly revealed and advocated the influence of organic and inorganic pollution, which aggravates and causes health issues to the nearby inhabitants. This study could also be advantageous to similar consequences seen elsewhere in the world.     

Cultivation-dependent and cultivation-independent characterization of the microbial community in acid mine drainage associated with acidic Pb/Zn mine tailings at Lechang, Guangdong, China

Cultivation-based and molecular approaches were used to characterize the phylogenetic composition and structure of the microbial community in an extremely acidic (pH 2.0) acid mine drainage (AMD) associated with Pb/Zn mine tailings that were undergoing vigorous acid generation. Acidophilic bacteria were isolated and enumerated on solid media, and were found to be restricted to isolates related to Acidithiobacillus ferrooxidans and Acidiphilium cryptum. By contrast, cloning and phylogenetic analysis of 16S rRNA genes revealed that, although low in total taxonomically distinct groups, the tailings AMD ecosystem harbored a wide range of phylogenetically diverse microbes. Of the 141 clones examined, 104 were phylogenetically affiliated with the recently discovered, iron-oxidizing Leptospirillum group III within the Nitrospira. It thus appears that iron serves as the major electron donor in this habitat. Thirty clones were affiliated with the Proteobacteria, half of which belonged to organisms related to Alphaproteobacteria species capable of ferric iron reduction. Other clones were grouped with Betaproteobacteria and Gammaproteobacteria (six clones each), and even with Deltaproteobacteria (three clones), a subdivision with anaerobic sulfate or metal (iron) reduction as the predominant physiological trait of its members. Finally, four clones were clustered within the Firmicutes and the Acidobacteria. Approximately half of the sequence types representing the majority of the total clones fell into lineages that are poorly represented by cultured organisms or have thus far been represented by only a few environmental sequences. Thus, the present study extends our knowledge of the biodiversity of microorganisms populating highly acidic AMD environments.     

Assessment of heavy metal pollution and ecological risk in marine sediments (A case study: Persian Gulf)

This study was made to determine the pollution status and potential ecological risk of heavy metals in sediment of Persian Gulf. Surface sediments were collected seasonally by Peterson grab, and the concentrations of heavy metals were measured by using inductively coupled plasma–optical emission spectrometry (ICP–OES). The range concentrations obtained in mg/kg were 10,800–22,400 for Fe, 5.32–10.12 for Pb, 24.63–42.38 for Ni, 22.52–39.46 for Cu, and 31.64–47.20 for Cr. The concentrations of Pb, Ni, Cu, and Cr have been found lower than the Interim Sediment Quality Guidelines and probable effect level values suggesting that heavy metal contents in sediments from area of study would not be expected to cause adverse biological effects on the biota. The obtained enrichment factor values for various metals were between minimal enrichment (Pb = 0.5) and extremely enrichment (Cu = 3.11). The values of I_geo for Pb, Ni, Cu, and Cr were characterized under no pollution (0). The highest value of potential ecological risk index (RI) (8.36) was observed at St. 4 while the lowest value (5.25) was detected at station 6. Based on potential ecological RI, the Persian Gulf had low ecological risk.     

Distribution and health risk assessment of heavy metals in soil surrounding a lead and zinc smelting plant in Zanjan,Iran

One of the problematic issues in soil pollution studies is heavy metal particles which are produced by mines and smelting units and spread through wind action and/or runoff. Pollution and health risk assessment of cadmium, lead, zinc, copper, and nickel in soil around the lead and zinc smelting factory was carried out in Zanjan City, Iran. Contamination factor (Cf), pollution load index (PLI), geoaccumulation index (Igeo), hazard quotient (HQ), hazard index (HI), and carcinogenic risk were pollution and human health risk assessment metrics in this study. Based on the Iranian soil guideline value, soil samples in the studied areas were contaminated the least by copper and nickel and the most by cadmium. PLI results showed that soils near the production line were heavily or extremely heavily polluted. The results of Cf and Igeo showed that lead and zinc were the most important contaminants. Health risk assessment indicated that lead and cadmium in soil were the main contaminants, which pose both carcinogenic and non-carcinogenic risks to human health; carcinogenic risk levels were unacceptably high (above 1 × 10^?4). It can be concluded that mining and smelting activities degrade soil quality in this region and the soil pollution might be extended to farming areas.     

Assessment of uranium concentration in the drinking water and associated health risks in Eastern Haryana,India

Quantification of uranium in drinking water has great significance considering its effects on human health. Drinking water samples collected from different sources, viz., hand pumps, tube-wells, and public water supply from Sonipat and Panipat districts of Haryana, India have been analyzed for uranium and other physico-chemical parameters. Uranium concentration in water samples was measured using Pulsed LED Fluorimeter. Uranium concentration in collected water samples ranges from 9.1 to 155.1 µg/L in Sonipat district and 14.9 to 123.3 µg/L in Panipat district. It was inferred from the data that uranium concentration in some water samples was higher than WHO &; USEPA recommended limit of 30 µg/L. The mean cancer risk due to uranium in drinking water in Sonipat and Panipat districts was found to be 1.40 × 10^?4 and 1.63 × 10^?4, respectively, which is lower than the maximum permissible limit (<10^?3). Total Dissolve Salts (TDS) in water samples of some villages in Sonipat district was higher than permissible limits for drinking prescribed by WHO &; BIS.     

Assessment of occupational hazards and associated risks in fuzzy environment: A case study of a university chemical laboratory

University laboratories involve various occupational hazards during the research and course activities, which might affect health and safety of both researchers and students, including chemical, physical, electrical, mechanical, as well as ergonomic and psychosocial risk factors. There are many aspects open to improvements in Occupational Health and Safety management of laboratories, and it is required to deal with risks, reduce them in an acceptable level, and implement control measures. In this study, a risk assessment approach is proposed for the university laboratory operations. The proposed approach incorporates 5S methodology, failure modes and effects analysis (FMEA), interval type-two fuzzy sets (IT2FSs), analytic hierarchy process (AHP), and the VlseKriterijumska Optimizacija I Kompromisno Resenje (VIKOR). AHP is injected into IT2FSs in the phase of evaluation and weighting of severity (S), occurrence (O), and detectability (D) parameters of FMEA. By applying IT2FVIKOR, it is aimed at prioritizing the emerged hazards in the chemical laboratory of the observed university. The proposed approach reveals the important hazards and suggests control measures for managing them. The study methodologically contributes to risk assessment in the knowledge, while a case study in a chemical laboratory of a newly established university offers an insight into education industry in safety improvement.     

Assessment of heavy metal pollution and human health risk in urban soils of a coal mining city in East China

The aims of this study were to determine the concentrations, distribution, potential ecological risk (PER), and human health risk (Risk) of heavy metals in urban soils from a coal mining city in China. A total of 36 topsoil samples from Huainan city, Anhui, East China, were collected and analyzed for As, Hg, Pb, Cd, Cr, and Cu. The PER was calculated to assess the pollution level. The hazard index (HI) and carcinogenic risk were used to assess the human health risk of heavy metals in the study area. The average concentration of As, Hg, Pb, Cd, Cr, and Cu were 12.54, 0.21, 24.21, 0.19, 49.39, and 21.74 mg kg^?1, respectively. The correlations between heavy metals indicated that Cu, Cr, Cd, and Pb mainly originated from automobile exhaust emissions, coal gangue, fly ash, and industrial wastewater, and that As and Hg mainly came from coal combustion exhaust. The PER index values of heavy metals decreased in the following order: Hg > Cd > As> Cu > Pb > Cr. The HI and Risk values indicated that the noncarcinogenic and carcinogenic risks of selected metals in the urban soil were both below the threshold values.     

Estimation of the migration potential of diesel fuel constituents from soil to ground water: A case study

A methodology for estimating the migration potential of diesel fuel constituents from soil to ground water was developed for a large commercial property impacted by diesel fuel. The diesel fuel impacts are associated with former railyard practices that occurred prior to 1970. The site is being redeveloped for commercial use. The proposed improvements for the site include an asphalt‐paved parking lot over the location of the diesel fuel‐impacted soils. The methodology is based on the composition of weathered diesel fuel and the migration characteristics and toxicity data of the diesel fuel constituents. Based on these considerations, the two elements of the methodology are (1) an evaluation of the migration potential of diesel fuel constituents in soil using the soil synthetic rainwater leachate laboratory analysis; and (2) a health‐risk assessment of the diesel fuel ground water impacts. This approach provided sufficient site‐specific data to support a regulatory agency decision allowing development to continue without active remediation of the site soils. If the methodology had not been applied to the site, a remedial method based on a 100 mg/kg to 1000 mg/kg TPH underground storage tank (UST) program soil cleanup level would have likely been required. Considering the project's time constraints and financial requirements, remedial options such as offsite disposal or onsite thermal treatment would have been used resulting in cleanup costs likely exceeding $500, 000. The potential value of this methodology can be best appreciated considering that, based on EPA estimates, there are approximately 295, 000 contaminated UST sites and a significant portion of these sites are contaminated with diesel fuel. These sites could benefit considerably from this approach.     

A GIS-based LVF model for semiquantitative assessment of groundwater pollution risk: A case study in Shenyang,NE China

Groundwater pollution risk assessment is a useful tool to prevent and control groundwater pollution, but its quantitative research is still relatively immature. In this study, a geographic information system based LVF model for a semiquantitative assessment of groundwater pollution risk is established, based on the groundwater pollution source load (L), groundwater vulnerability (V), and groundwater function value (F). Further, the pollution source load is characterized by seven specific pollution sources, the vulnerability is calculated by the modified DRASTIC method, and the groundwater function value is evaluated with the water quality and quantity. The model was used to assess the risk of shallow groundwater pollution in Shenyang city, Northeast China, with an area of 8,263 km². The results show that highest risk areas account for 16.3% of the study area and are mainly distributed in the east of the study area. High risk areas are significantly affected by a shallow buried depth of groundwater and many types of harmful pollutants from industrial, agricultural, and domestic pollution sources. The evaluation results reflect the risk of groundwater pollution in the Shenyang area, which is relevant to the management and sustainable use of groundwater resources in the area.     

Quaternary geomorphological and climatic changes associated with the diversification of Iberian freshwater fishes: The case of the genus Cobitis (Cypriniformes,Cobitidae)

We studied the population genetic structure of Cobitis vettonica, an endangered freshwater fish species endemic to the Iberian Peninsula, in order to propose a biogeographic model of the responses of species to the multiple changes that occurred in the Iberian hydrological system during the Quaternary period. We also deciphered the relationship of C. vettonica with its sister species C. paludica, particularly in sympatric areas, and provide genetic information for conservation purposes. To achieve this goal, we analyzed both mitochondrial and nuclear data (the cytochrome b and the nuclear recombination activating 1 genes) and a battery of single‐nucleotide polymorphisms (SNPs) of 248 individuals of C. vettonica or C. paludica from 38 localities, including some sympatric ones, covering the entire distribution area of C. vettonica. We highlight the important role played by the hydrogeomorphological processes and climatic changes that occurred in the Iberian Peninsula during the Quaternary on both the population structure of C. vettonica and its relationship with its sister species C. paludica. Our results support the genetic introgression of populations at the eastern limit of the distribution of C. vettonica. Furthermore, we postulate genetic introgression in sympatric areas. Finally, we propose the establishment or expansion of four Operational Conservation Units (OCUs) for C. vettonica, and highlight the threat faced by its populations due to the low level of genetic diversity detected for some of its populations and genetic introgression with C. paludica, which could eventually displace C. vettonica, resulting in a loss of diversity in this species.     

Evaluation of metal contamination and risk assessment to human health in a coal mine region of India: A case study of the North Karanpura coalfield

The present study aimed to evaluate metal contamination level in coal mine water of the North Karanpura coalfields and assess the possible health risk due to the intake of untreated mine water. Fourteen coal mine water samples were collected from the study area and analyzed for Al, As, Ba, Cr, Cu, Fe, Mn, Ni, Se, and Zn using inductively coupled plasma-mass spectroscopy (ICP-MS). The heavy metal pollution index (HPI) was used to calculate metal pollution level in the coal mine water. The hazard quotient (HQ) and hazard index (HI) were estimated for health risk to child and adult by using the United States Environmental Protection Agency (USEPA) methods. The concentrations of Al, Fe, Mn, and Ni in coal mine water were exceeding the acceptable as well as the maximum permissible limits specified for drinking and domestic uses. The HPI values were below the critical pollution index level of 100 except at one location. The estimated HQ and HI values for adult and children were greater than the standard limits in nearly half of the water samples. High HQ and HI values suggest that suitable treatment of coal mine water will require before its utilization in domestic and drinking purposes.     

Impact of exposure to cooking-generated air pollution on human respiratory health: A case study of different microenvironments of India

Cooking is a significant source of indoor air pollution (IAP) and is associated with significant morbidity and mortality. Liquefied petroleum gas (LPG; predominant cooking fuel of urban India), though safer than solid fuels, emits significant concentration of fine particles, NO_x and several other pollutants, which may trigger respiratory ailments. Effect of exposure to pollutants, generated from fuel combustion and cooking activities, on subjects of different microenvironments has been assessed by carrying out a health survey using a questionnaire and by conducting spirometry. A significant increase in prevalence of cough and impairment of lung functions has been found among cooks compared to non-cooks. A significant difference in prevalence of cough between smoker and non-smoker non-cooks but no such difference in cooks suggests that kitchen pollutants and smoking have similar effects on respiratory system. Comparison of lung functions (average FEV1% predicted and average FVC% predicted) of cooks (90.6% and 82.6%) and non-cooks (93.7% and 86.2%) shows a significant difference in certain categories. The study brings out a close association between different kitchen microenvironments and specific respiratory parameters, signifying short- and long-term impairment. The impairment is prevalent in both rural and urban Indian cooks, signifying that fuel usage (biomass and LPG) and cooking practices play a prominent role in affecting respiratory health.     

县域耕地非农化、非粮化与乡村人口空心化的耦合协调关系——以长江经济带为例

耕地非农化、非粮化的不断扩大严重影响了我国的粮食安全,亟需研究其演变机制和管控措施。基于1990、2000、2010和2020年四期土地覆盖数据和农业劳动力数据,利用耦合协调度模型和探索性时空数据分析(ESTDA)方法,分析了长江经济带县域耕地非农化、非粮化和乡村人口空心化的时空演化特征及其耦合协调关系。结果表明:①非农化呈现东高西低的格局,且存在围绕中心城市高值集聚的态势。非粮化则大致呈现出西高东低的倾向,远离大城市的边远县域非粮化程度较高。研究期内非农化和非粮化呈整体加剧趋势,乡村人口空心化程度显著提升。②非农化、非粮化和乡村人口空心化之间呈现较强耦合作用,失调区域逐渐扩大。③非农化、非粮化和乡村人口空心化耦合协调度存在明显的空间集聚现象并逐渐增强。高值集聚区主要分布在上游地区且数量逐渐减少,低值集聚区分布相对分散。④非农化、非粮化和乡村人口空心化耦合协调度具有较强时空动态特征,但县域及其邻域协同变动的比例较高,表明具有较强的局域整合性。     

Heavy metals in urban and peri-urban soils of a heavily-populated and industrialized city: Assessment of ecological risks and human health repercussions

Abstract

Increasing levels of heavy metals in soil have become a serious concern for human health because they can be easily transferred into the human body through contaminated food web. It is imperative to evaluate pollution levels, origin and ecological risks of heavy metals. The geoaccumaualtion (Igeo), contamination factor (CF), pollution load index (PLI) and human health risk were estimated to determine the soil pollution in Faisalabad, a heavily-populated and industrialized city of Pakistan. The maximum CF (1.58) and PLI (1.22) values were estimated for Cd and Pb, respectively, and maximum Igeo (?0.19) value was observed for Cd. Correlation analysis and principal component analysis suggested that common industrial sources for Cd and Pb were identified in the study sites. It clearly indicates that the significant levels of heavy metals pollution arise from local industries, busy commercial centers and heavy traffic load in the last few decades in heavily-populated and industrialized city. Further, soil heavy metals concentration were used to evaluate the human health risk such as chronic or non-carcinogenic including hazard indexes HIexP (ingestion, inhalation and dermal and carcinogenic) and cancer risk (CR). The HIexP values of Pb (10.30) and Cd (4.56) were found above the permissible limit (HI = 1) for children. The CR due to carcinogenic metals (Co, Cr and Cd) are within the safe limit (1E-06 to 1E-04). However, CR was comparatively higher in adults as compared to children. The results from the current investigation can help to develop a sustainable strategy in the study region to minimize the entry of heavy metals in food chain through source identification and pollution abatement techniques.     

Assessing the ecological health risk in a conserved mangrove ecosystem due to heavy metal pollution: A case study from Sundarbans Biosphere Reserve,India

Sundarbans Biosphere Reserve (SBR) is the world's largest contiguous conserved mangrove forest with unique flora and fauna, but it still has to bear the brunt of anthropogenic disturbances due to huge population pressure. This study aimed to identify the sources, extent of metal pollution (Cd, Cr, Mn, Ni, Pb, and Zn), and their potential ecological risk in this fragile ecosystem. Sediments were collected from 10 locations with varied levels of anthropogenic pressure from the fringe of the reserve forest. Cluster analysis (CA) and factor analysis (FA) identified Ni, Cd, and Pb as the major anthropogenic pollutants in this area. Concentrations of Pb (27.79–47.07 mg/kg) and Cd (0.8–3.3 mg/kg) were found to be higher in areas reliant on fossil fuel-operated motorboats for transport and dependent on rechargeable batteries to cope with the shortage of electricity. The contamination factor (C_f), geoaccumulation index (I_geo), and ecological risk index (ERI) highlight that populated areas are mostly exposed to Cd, Pb, and Cr contamination. Interpolation maps identified that the central part of the area is acutely affected by Cd pollution, whereas the main ecotourism routes within the reserve forest have high Pb concentrations. This study concludes that conservation-friendly ecotourism and improper disposal of batteries can also pose a threat to this ecosystem and these possibilities could be considered during formulation of conservation plans.