Deep-water brachiopod assemblage from the Middle Miocene of Kralice nad Oslavou,Moravia, southeastern Czech Republic

Eight brachiopod species, i.e. Novocrania sp., Cryptopora lovisati (Dreger, 1911), “Terebratula” sp., Megathiris detruncata (Gmelin, 1791), Argyrotheca cuneata (Risso, 1826), Joania cordata (Risso, 1826), Megerlia truncata (Linnaeus, 1767), and Platidia anomioides (Scacchi and Philippi, 1844), have been identified in the Middle Miocene deposits of Kralice nad Oslavou, Moravia, Czech Republic. The species C. lovisati and P. anomioides dominate the studied assemblage, while others are very rare. Novocrania, C. lovisati and M. truncata are reported for the first time from the Moravian part of the Carpathian Foredeep. In species composition, the assemblage from Kralice resembles other Middle Miocene Paratehyan assemblages, interpreted as shallow water, but the dominance of C. lovisati and P. anomioides makes it clearly different, indicating an environment deeper than 100 m.     

Black yeast habitat choices and species spectrum on high altitude creosote-treated railway ties

Polyextremotolerant black yeast-like fungi thrive in moderately hostile environments where they are concomitantly subjected to several types of stress, such as toxicity, scarce nutrient availability, and high or low temperature extremes. Their ability to assimilate alkylbenzenes (toxic environmental pollutants) enhances their growth in harsh conditions, including on railway ties. Samples were collected using cotton swabs, premoistened with physiological saline, from 658 oak and concrete railway ties at six train stations in Turkey at altitudes ranging between 1026 and 1427 m. The samples were inoculated on malt extract agar supplemented with chloramphenicol, and incubated at 26 °C for 4 weeks. Twenty-four samples (3.6 %), 17 from oak and 7 from concrete (5.6 % vs. 2 %; P = 0.02), tested positive for fungi. Exophiala crusticola was found to be the most common species (n = 13), followed by Exophiala phaeomuriformis (n = 7) and Exophiala heteromorpha (n = 4). These results suggest that hydrocarbons, particularly creosote-treated oak woods, support the growth of black yeasts, some of which are opportunists in humans.     

Molecular phylogeny and biogeography of the narrow endemic Coelonema and affinitive Draba (Brassicaceae) based on two DNA regions

To clarify the relationship between two genera, Draba and the narrow genus Coelonema, endemic to the QilianMountains of the northeastern Qinghai-Tibet Plateau, phylogenetic analyses were conducted using nuclear ribosomal DNA ITS, and the chloroplast DNA trnL, from Coelonema draboides and 30 species of Draba representing eight sections, including 25 species of Chinese Draba, seven of which were endemic to the study region. The results unambiguously support several previously published proposals to unite Coelonema with Draba and accommodate C. draboides in the latter genus on the basis of morphological re-examination. Our molecular data presented here also provide evidence that these two genera should be combined as a monophyletic group with high support. In addition, it is estimated that Draba may have originated about 1.36–2.71 Mya, with C. draboides diverging from Draba about 0.15–0.31 Mya, based on the molecular calibration of ITS datasets. The assumed speciation and rapid expansion of these two genera is likely to have occurred in the eastern edge of the QilianMountains area according to molecular phylogeny and estimated divergence times, which correspond well with the known geological and paleobotanical histories of the Qinghai-Tibet Plateau.     

Upper thermal thresholds of shallow vs. deep populations of the precious Mediterranean red coral Corallium rubrum (L.): Assessing the potential effects of warming in the NW Mediterranean

Recent mortality outbreaks in marine ecosystems have been linked to elevated seawater temperatures associated with global climate change. Acquisition of thermotolerance data is essential, not only to determine the role of temperature in mortality outbreaks, but also to predict consequences of global warming. In the NW Mediterranean region, elevated seawater temperatures during the summer periods of 1999 and 2003 caused mass mortality of the Mediterranean red coral, Corallium rubum (L. 1758). Experiments testing the upper thermal limits of this species were carried out in aquaria using samples collected from populations from 11 to 40 m depth in the Marseilles region (NW Mediterranean, France). Samples were subjected to temperature treatments between 18 and 30 °C with an exposure time of 5 and 25 days. Three biological response variables were used to evaluate effects of the treatments: coenenchyme necrosis, polyp activity and calcification rates (⁴⁵Ca incorporation in calcareous skeleton). The results showed that exposure to 24 °C for 24 days caused a beginning of mortality only for the deep population, and to 25 °C for between 9 and 14 days caused mass mortality of both sample groups. The response variable results indicate that samples from the shallow population had greater thermotolerance of elevated seawater temperatures than the deep samples. The shallow samples showed greater polyp activity and higher calcification rate with a delayed necrosis response than the deep samples. These initial thermotolerance results combined with both hydrographic models and seawater temperature monitoring are the first step towards developing predictive tools for anticipating future effects of climate change in the red coral populations.     

The identity of Tetracyclus constrictus (Bacillariophyceae) and a description of Tetracyclusbradburyii, a new miocene species

The siliceous valves from species of Tetracyclus (Bacillariophyceae) have variable but characteristic shapes. In this paper, species characterised by having valves with a central constriction are discussed. This distinctive shape occurs during only a period of its lifecycle. Tetracyclus constrictus and Tetracyclus celatom have been applied to fossil specimens occurring in deposits from the west coast of the USA and the east coast of Russia. Do these names apply to two closely related species or are they one and the same taxon? Two further species, Tetracyclus javanicus and Tetracyclus peragalli, have been involved in the identity of T. constrictus–T. celatom. T. constrictus M. Peragallo is the correct name and author for specimens of the extinct Miocene, circum-Pacific (or northern) fossil species with valves panduriform with rounded poles; T. javanicus refers to a species found living on Java only; fossil specimens usually referred to T. javanicus (Java) belong to a new taxon, Tetracyclus bradburyii (USA); T. peragalli is an extinct Miocene fossil, with a northern hemisphere distribution; small (≤10 μm) circular/elliptical fossil specimens, found alongside other specimens, are difficult (if not impossible) to determine to species level.     

Himantura tutul sp. nov. (Myliobatoidei: Dasyatidae), a new ocellated whipray from the tropical Indo-West Pacific,described from its cytochrome-oxidase I gene sequence

It has been previously established that the Leopard Whipray, Himantura leoparda, consists of two genetically isolated, cryptic species, provisionally designated as ‘Cluster 1’ and ‘Cluster 4’ (Arlyza et al., Mol. Phylogenet. Evol. 65 (2013) [1]). Here, we show that the two cryptic species differ by the spotting patterns on the dorsal surface of adults: Cluster-4 individuals tend to have larger-ocellated spots, which also more often have a continuous contour than Cluster-1 individuals. We show that H. leoparda's holotype has the typical larger-ocellated spot pattern, designating Cluster 4 as the actual H. leoparda. The other species (Cluster 1) is described as Himantura tutul sp. nov. on the basis of the nucleotide sequence of a 655-base pair fragment of its cytochrome-oxidase I gene (GenBank accession No. JX263335). Nucleotide synapomorphies at this locus clearly distinguish H. tutul sp. nov. from all three other valid species in the H. uarnak species complex, namely H. leoparda, H. uarnak, and H. undulata. H. tutul sp. nov. has a wide distribution in the Indo-West Pacific, from the shores of eastern Africa to the Indo-Malay archipelago. H. leoparda under its new definition has a similarly wide Indo-West Pacific distribution.     

Morphological and molecular evidence of three species of pikes Esox spp. (Actinopterygii,Esocidae) in France,including the description of a new species

This integrative taxonomy study of French pikes compares morphological characters and molecular sequence data (mitochondrial COI and nuclear Plagl2 genes). In addition to the expected E. lucius, DNA sequences and morphology both support a new species in France, E. aquitanicus sp. nov. from the Charente to the Adour drainages. It is characterized by a color pattern of sides with narrow 1–1.5-scale-wide oblique vertical bands, conferring it a marbled coat, a snout only 0.9 times larger than the postorbital length, an anal fin basis 1.1–1.2 times larger than the caudal peduncle length, 101 to 121 lateral scales, 53 to 57 vertebrae, as well as 24 diagnostic sites in the COI gene and 3 in the Plagl2 gene. Partial COI sequences (131 bp) from modern and historical specimens indicate also the presence of E. cisalpinus and E. lucius during the 19th century in Lake Geneva. Morphological and molecular data points to a possible hybridization between E. lucius with both other local pike species, representing a risk for them. Their endangerment status should be evaluated rapidly in order to take conservation measures.     

Caribbean Lower Tithonian ammonites from central-east Mexico

Imlay's ammonite species Paradontoceras butti and Paradontoceras antilleanum are first reported from central-east Mexico under precise stratigraphic control. Mexican and Cuban ammonites referred to these species have been studied and proved to have been gathered from a relatively limited area within the southern paleomargin of the north American Plate, which embraces eastern Mexico and north-western Cuba. The palaeontological examination, the multivariate analysis conducted on Mexican and Cuban data, the precise biostratigraphic and biogeographic control support the reinterpretation of Imlay's species P. antilleanum and P. butti. The latter has been designated the single, valid nominal species-level taxon which comprises the two species proposed by Imlay. The new genus Housaites has been created since the taxon Butticeras Houša is not available for taxonomic nomenclature. Housaites butti (Imlay) is upper Lower Tithonian (Semiforme/Verruciferum Zone of the Tethyan standard) in Mexico. The stratigraphic range in Cuba is not conclusively known.     

Genetic diversity of Astragalus nitidiflorus, a critically endangered endemic of SE Spain,and implications for its conservation

Inter-simple sequence repeats (ISSR) markers were used to assess the genetic diversity and population structure in five populations of Astragalus nitidiflorus, a critically endangered species endemic to southeast Spain. Eight primers amplified 78 bands with 40 (51.3%) being polymorphic. Statistical results indicated a low genetic diversity at the population and species level, with percentages of polymorphic bands (PPB) ranging from 28.2 to 37.2% (an average of 31.8%), and means of gene diversity (H_E) of 0.129 and 0.171 respectively. The Shannon’s index (SI) ranged from 0.160 to 0.214 at the population level and was 0.260 at the species level. A low level of genetic differentiation among populations was detected, based on the Shannon’s information index (0.297), the coefficient of genetic differentiation between populations (G_ST = 0.2418) and AMOVA analysis (Φ_ST = 0.255). The estimated gene flow (Nm) was 0.789. The high genetic connectivity found among populations of A. nitidiflorus is an evidence of a recent habitat fragmentation. In addition, a bottleneck event in the past has been revealed, with a subsequent reduction of population size and a loss of genetic variation. Based on these results, the conservation strategy of A. nitidiflorus was proposed.     

The “tomcat compound” 3-mercapto-3-methylbutanol occurs in the urine of free-ranging leopards but not in African lions or cheetahs

The felid-specific urinary odour compound 3-mercapto-3-methylbutanol and its precursors have been found in several felid species in captivity, but its presence in wild felids has not previously been investigated. We analysed the naturally deposited scent marks from three species of wild, free-ranging big cats in Northern Botswana and found 3-mercapto-3-methylbutanol in four samples of leopard urine (N = 13), but not in lion urine (N = 15) or cheetah urine (N = 6). Individual variation in the presence of the tomcat compound in samples from big cats in the wild may reconcile conflicting results from captive cats.     

Calcareous nannofossil biostratigraphy (Upper Bajocian-Lower Bathonian) of the Ravin du Bès section (Bas Auran, Subalpine Basin, SE France): Evolutionary trends of Watznaueria barnesiae and new findings of “Rucinolithus” morphotypes

A biostratigraphic study based on calcareous nannofossils was performed on the Ravin du Bès section (Bas Auran area, SE France). Semi-quantitative estimates of total nannofossil and single species abundances showed that calcareous nannofloras are rare to common and their preservation is poor to moderate. The following biohorizons were identified and calibrated to ammonite biozonation: the first occurrence (FO) of Watznaueria aff. W. communis, the FO of Pseudoconus enigma; the FO of “Rucinolithus”; the last occurrence (LO) of Carinolithus magharensis; the FO of Stephanolithion speciosum octum and the FO of Watznaueria barnesiae. These results confirm that calcareous nannofossils are good biostratigraphic markers for the Bajocian/Bathonian boundary interval. Moreover, the occurrence of P. enigma allows a direct calibration between Tethyan and Boreal nannofossil events and biozones. Morphometric analyses were performed on the W. communis-W. barnesiae group in order to quantify changes between the two taxa. The intermediate form W. aff. W. communis has been identified; it comprises coccoliths very similar to W. communis, but with central area length ≤ 0.9 μm. This study allowed the detailed reconstruction of the evolutionary trends from W. communis to W. barnesiae: the intermediate taxon W. aff. W. communis appears abruptly in the latest Bajocian and persists after the FO of W. barnesiae in the earliest Bathonian. Our results support the model of punctuated equilibrium rather than a phyletic gradualism. The finding of “Rucinolithus” morphotypes, very similar to the Cretaceous taxa R. terebrodentarius and R. terebrodentarius youngii, is intriguing. They might represent nannoliths strongly affected by a recurrent “Lazarus effect” or be diagenetic artifacts or of bacterial bioprecipitation.     

Plio-Pleistocene evolution of the genus Castor (Rodentia, Mammalia) in Europe: C. fiber plicidens of Pietrafitta (Perugia, Central Italy)

In the lignite sediments of Pietrafitta (Tiberino Basin, Umbria, Central Italy), a rich fossil assemblage of vertebrate, invertebrate and plant remains belonging to the Farneta Faunal Unit (Late Villafranchian, Early Pleistocene) was collected. Among them fossil beaver cranial remains are relatively abundant. Western-Central Europe Villafranchian beaver remains were assigned to C. plicidens by some authors because molar occlusal surface patterns show complex enamel crenulations. Several recent authors have classified them as C. fiber while analysing other morphological patterns. Our samples have been compared to Plio-Pleistocene fossil remains and to living European populations of the genus Castor. New morphometric parameters on molar occlusal surfaces have been defined and statistical analyses (One-Way MANOVA, Principal Component Analysis and Canonical Discriminant Analysis) have been performed on them. The results point out a subspecific separation between the Late Villafranchian beaver of Pietrafitta, Quarata and San Giovanni in Valdarno (Umbria and Tuscany) and C. fiber populations. St. Vallier (France) Late Pliocene and Mosbach 2 (Germany) Middle Pleistocene beavers classified respectively by Viret and Friant as C. plicidens, show a C. f. fiber molar teeth pattern. Therefore, C. fiber plicidens did not occur in Central-Western Europe and this subspecific name may be used only for the local populations of Valdarno and Tiberino Basin (San Giovanni in Valdarno, Quarata, Pietrafitta and a few localities of the same area), at that time peripheral populations, probably semi-isolated during the Late Villafranchian, and at the southern limit of the geographic range of C. fiber.     

Recent population expansions of non-native ascidians in The Netherlands

Over the last 50 yrs seven non-native ascidians have settled in The Netherlands, concentrated in the two periods 1974-1977 and 1991-2004 (i.e., Styela clava, Aplidium glabrum, Diplosoma listerianum, Didemnum sp., Botrylloides violaceus, Molgula complanata and Perophora japonica). The year of the introduction of B. violaceus remains a matter of dispute because many of the Botrylloides specimens that are recorded in western Europe, have been identified as the closely resembling species B. leachi. Only Didemnum sp. has become a true invasive species and has become a threat to native ecosystems, especially in the province of Zeeland, by its ability to overgrow virtually all hard substrata present. This includes rocks, stones, sand, algae and almost all sessile marine animals. The sudden population expansion of the didemnid from 1996 onward, coincided with the cold winter of 1995-1996, which caused decreased population sizes of many marine animals. The resulting increase in the availability of suitable substrates for settlement and the strong decrease of grazing sea urchins, may have triggered the population expansion. Studying its population dynamics, the optimal growing temperature for Didemnum sp. appears to be 14-18 °C. Virtually all colonies die when the water temperature gets colder than 5 °C. Colonies growing on live marine animals seem to be more resistant to the cold, than those growing on rocks, stones and plants. Two potential predators of the didemnid have also been recorded in Dutch waters: the gastropods Trivia arctica and Lamellaria sp.     

Enhanced ultraviolet radiation can terminate sexual reproduction in the broadcasting coral species Acropora cervicornis Lamarck

The effects of enhanced ultraviolet radiation (280-400 nm: UVR) on the fecundity of Acropora cervicornis were measured in field-transplanted colonies from 20 m to 1 m depth and vice versa at La Parguera, Puerto Rico. Fecundity was estimated from histological sections made from tissue samples obtained at different time intervals during the experimental period (March - August 2003). All colonies transplanted from 20 m to 1 m showed a 100% reduction in gonads per mesentery per polyp one month after transplantation, while those transplanted from 1 m to 20 m did not show any significant reduction in fecundity throughout the experimental period. The latter colonies did show however, a delay in the spawning times by releasing their gamete bundles approximately two-three weeks after the controls at 1 m and two months after the controls at 20 m suggesting an induced response as a consequence of changes in their daily light cycle due to less radiation (PAR and UVR) available at 20 m compared to 1 m. Control colonies at 20 m spawned after the full moon of June 2003, while the controls at 1 m spawned 5-6 days after the full moon of July 2003. While a possible reabsorption of the gametes occurred in A. cervicornis colonies transplanted from 20 m to 1 m, the expulsion of these gametes due to the sudden stress caused by the transplantation is not discarded. The results suggest that sudden increases in UVR can completely stop sexual reproduction in ramose broadcasting coral species, which in turn can affect the dominance of the species and the composition and structure of shallow reef environments.     

Meiothermus rufus sp. nov., a new slightly thermophilic red-pigmented species and emended description of the genus Meiothermus

Four red-pigmented isolates, with optimum growth temperatures of approximately 55–60 °C and an optimum pH for growth between 7.5 and 8.5, were recovered from hot springs in Central France. Phylogenetic analysis of the 16S rRNA gene sequences showed that these organisms represented a new species of the genus Meiothermus. The new isolates could be distinguished from other strains of the species of the genus Meiothermus primarily by the glycolipid profile and fatty acid composition because these organisms lacked the hydroxy fatty acids and the glycolipid variant GL-1a found in all other isolates of the species of Meiothermus examined. On the basis of the results presented here we propose the name Meiothermus rufus for the new species, which is represented by strains CAL-4^T (=DSM 22234^T=LMG 24878^T) and CAL-12 (=DSM 22235=LMG 24879). We also propose emending the genus Meiothermus to include strains that have only one glycolipid instead of two glycolipid variants.     

Temperature-induced oviposition in the brachyuran crab Cancer setosus along a latitudinal cline: Aquaria experiments and analysis of field-data

Ovigerous females of Cancer setosus are present year-round throughout most of its wide range along the Peruvian/Chilean Pacific coast (2°S-46°S). However, their number of egg-masses produced per year remains speculative and as such has neither been considered in latitudinal comparisons of reproduction, nor for its fisheries management. In order to reveal the effect of temperature on egg-mass production and egg-development, female C. setosus were held in through-flow aquaria under natural seasonal temperature conditions (16-23 °C) in Antofagasta (23°S), Northern Chile (05/2005-03/2006; 10 months), and at three constant temperatures (12, 16, 19 °C) in Puerto Montt (41°S), Central Southern Chile (09/2006-02/2007; 5 months). Female crabs uniformly produced up to 3 viable egg-masses within 4 1/2 months in Antofagasta and in Puerto Montt (at 19 °C). The second egg-mass was observed 62.5 days (± 7.6; N = 7) after the oviposition of the first clutch and a third egg-mass followed 73.5 days (± 12.5; N = 11) later in Antofagasta (at 16-23 °C). Comparably, a second oviposition took place 64.4 days (± 9.8, N = 5) after the first clutch and a third, 67.0 days (± 2.8, N = 2), thereafter, at 19 °C in Puerto Montt. At the two lower temperatures (16 and 12 °C) in Puerto Montt a second egg-mass was extruded after 82.8 days (± 28.9; N = 4) and 137 days (N = 1), respectively. The duration of egg-development from oviposition until larval hatching decreased from 65 days at 12.5 °C to 22.7 days at the observed upper temperature threshold of 22 °C. Based on the derived relationship between temperature and the duration of egg-development (y = 239.3175e^{− 0.107x}; N = 21, r² = 0.83) and data on monthly percentages of ovigerous females from field studies, the annual number of egg-masses of C. setosus was calculated. This analysis revealed an annual output of about one egg-mass close to the species northern and southern distributional limits in Casma (9°S) and Ancud (43°S), respectively, while at Coquimbo (29°S) about two and in Concepción (36°S) more than 3 egg-masses are produced per year.