Cover Picture: J. Biophotonics 5/2014

The cover image illustrates the working principle of the coupled external cavity photonic crystal (PC) enhanced fluorescence. The resonantly reflected laser wavelength from the PC provides feedback to the diode. The cavity then lases at the resonant wavelength of the PC. Addition of biomolecules to the surface of the PC shifts the resonant reflected wavelength, which in turns changes the lasing wavelength of the PC. This configuration tunes the lasing wavelength of the cavity to the resonant wavelength of the PC, thus eliminating the need to adjust the incident angle of the detection instrument when the PC is altered by surface chemistry layers or by capture molecules. This scheme leads to ～10 increase in the electromagnetic enhancement factor compared to ordinary photonic crystal enhanced fluorescence. Using this method we achieve ～105 improvement in the limit of detection of a fluorophore‐tagged protein compared to its detection on an unpatterned glass substrate. (Picture: A. Pokhriyal et al., pp. 331–339 in this issue)     

Highly Sensitive SPR Sensor Based on D-shaped Photonic Crystal Fiber Coated with Indium Tin Oxide at Near-Infrared Wavelength

A surface plasmon resonance (SPR) sensor based on D-shaped photonic crystal fiber (PCF) coated with indium tin oxide (ITO) film is proposed and numerically investigated. Thanks to the adjustable complex refractive index of ITO, the sensor can be operated in the near-infrared (NIR) region. The wavelength sensitivity, amplitude sensitivity, and phase sensitivity are investigated with different fiber structure parameters. Simulation results show that ～6000 nm/refractive index unit (RIU), ～148/RIU, and ～1.2?×?10⁶ deg/RIU/cm sensitivity can be achieved for wavelength interrogation, amplitude interrogation, and phase interrogation, respectively, when the environment refractive index varies between 1.30 and 1.31. It is noted that the wavelength sensitivity and phase sensitivity are more pronounced with larger refractive index. The proposed SPR sensor can be used in various applications, including medicine, environment, and large-scale targets detection.     

Highly Sensitive Plasmonic Temperature Sensor Based on Photonic Crystal Surface Plasmon Waveguide

We propose a highly sensitive temperature sensor based on photonic crystal surface plasmon waveguides comprising different plasmonic active metals such as gold, silver, and aluminum, utilizing surface plasmon resonance phenomenon. We found that the resonance wavelength can be easily and substantially tuned over a broad spectral range by changing the temperature and also by judiciously choosing the different plasmonic metals. Employing coupled mode theory, we found that the proposed sensor can be used in harsh environment with sensitivity as high as ～70 pm/K around telecommunication window.     

Highly Sensitive Surface Plasmon Resonance Based D-Shaped Photonic Crystal Fiber Refractive Index Sensor

In this article, a D-shaped photonic crystal fiber based surface plasmon resonance sensor is proposed for refractive index sensing. Surface plasmon resonance effect between surface plasmon polariton modes and fiber core modes of the designed D-shaped photonic crystal fiber is used to measure the refractive index of the analyte. By using finite element method, the sensing properties of the proposed sensor are investigated, and a very high average sensitivity of 7700 nm/RIU with the resolution of 1.30 × 10^?5 RIU is obtained for the analyte of different refractive indices varies from 1.43 to 1.46. In the proposed sensor, the analyte and coating of gold are placed on the plane surface of the photonic crystal fiber, hence there is no necessity of the filling of voids, thus it is gentle to apply and easy to use.     

Highly Sensitive Side-Polished Birefringent PCF-Based SPR Sensor in near IR

We propose a highly sensitive side-polished birefringent photonic crystal fiber (PCF) sensor based on surface plasmon resonance (SPR). The polished surface of the proposed structure is coated with indium tin oxide (ITO) to excite plasmon and the analytes can be placed on the flat surface easily instead of filling the voids. The birefringent nature of the structure helps in coupling more fields to the ITO-dielectric interface. With the optimum thickness of 110 nm of ITO, the structure shows a maximum wavelength sensitivity of 17000 nm/RIU with a resolution of 5.8?×?10^?6 RIU. Further this also showed an amplitude sensitivity of 74 RIU^?1 along with a resolution of 1.35?×?10^?5 RIU. Moreover, the effect of bending on this low loss structure is also analyzed.     

Highly Sensitive Plasmonic Refractive Index Sensor Based on Dual D-Shaped Photonic Crystal Fiber with Aluminum Nitride-Silver Films

A dual-core and dual D-shaped photonic crystal fiber (PCF)-based surface plasmon resonance (SPR) sensor with silver and aluminum nitride (AlN) films is designed. The distribution characteristics of the electromagnetic fields of core and plasmon modes, as well as the sensing properties, are numerically studied by finite element method (FEM). The structure parameters of the designed sensor are optimized by the optical loss spectrum. The results show the resonance wavelength variation of 489 nm for the refractive index (RI) range of 1.36?~?1.42. In addition, a maximum wavelength sensitivity of 13,400 nm/RIU with the corresponding RI resolution of 7.46?×?10^?6 RIU is obtained in the RI range of 1.41?~?1.42. The proposed sensor with the merits of high sensitivity, low cost, and simple structure has a wide application in the fields of RI sensing, such as hazardous gas detection, environmental monitoring, and biochemical analysis.

     

A Polarization Filter Based on Photonic Crystal Fiber with Symmetry Around Gold-Coated Holes

We propose a modified design for a photonic crystal fiber (PCF) polarization filter based on surface plasmon resonance (SPR). The air holes are arrayed in diamond lattices, and the diameter of the holes around the gold-coated holes are different that can separate the refractive index of the x-polarization and y-polarization second order surface plasmon polariton (SPP) modes. The influences of structural parameters of the photonic crystal fiber (PCF) on the filter characteristics are studied using the finite element method (FEM). Great changes have taken place in the results of numerical simulation by changing the thickness of the gold film and air hole diameter. Simulation results show that the resonance wavelength is communication wavelength 1550 mm, the loss of the y-polarization mode is 43,126.7 dB/m. When the length of the fiber is 500 μm, extinction ratio is more than 20 dB at the communication wavelength, and bandwidth achieve to 190 nm. It is an important property of PCF polarization filter in production.     

Rapid and visual detection for hypochlorite of an AIE enhanced fluorescence probe

In this paper, a new ‘turn‐on' fluorescence probe for the rapid, sensitive, and visual detection of hypochlorite is reported. The push–pull type trianiline–tricyanofuran‐based fluorescent probe was prepared using a condensation reaction between tricyanofuran and the thiophene–trianiline derivative that had high quantum yields and showed aggregation‐induced emission enhanced properties. Upon exposure to hypochlorite, prominent fluorescence enhancement of the probe was observed via the release of the fluorophore from the probe. The probe showed a ratiometric absorption change at 315 nm and 575 nm. Importantly, the probe showed an excellent detection limit for hypochlorite at 1.2 × 10^?7 M in solution and it was successfully applied for monitoring hypochlorite in waste water by test strip. This work reports a new fluorescence analytical sensing method for hypochlorite that has potential practical value in environmental monitoring and biological discrimination.     

The Determination of Deoxyribonucleic Acids with Triadimenol Based on the Enhancement of Resonance Light Scattering

For the first time, triadimenol was used to determine nucleic acid (DNA) using the resonance light scattering (RLS) technique. The RLS of triadimenol was greatly enhanced by DNA in the range of pH 1.6 ～ 1.9. A resonance light‐scattering peak at 310nm was found, and the enhanced intensity of RLS at this wavelength was proportional to the concentration of DNA. The linear range of the calibration curve was 0 ～ 9 µg/ml with the detection limit of 24 ng ml^? 1. The mechanism studies of the system indicated that the enhanced RLS is due to the aggregation of triadimenol on DNA. The nucleic acids in synthetic samples and in rice seedling extraction were analyzed with satisfactory results. Compared with other methods, this method is convenient, rapid, inexpensive and simple.     

Analysis of a Surface Plasmon Resonance Probe Based on Photonic Crystal Fibers for Low Refractive Index Detection

A photonic crystal fiber (PCF)-based surface plasmon resonance (SPR) probe with gold nanowires as the plasmonic material is proposed in this work. The coupling characteristics and sensing properties of the probe are numerically investigated by the finite element method. The probe is designed to detect low refractive indices between 1.27 and 1.36. The maximum spectral sensitivity and amplitude sensitivity are 6 × 10³ nm/RIU and 600 RIU^?1, respectively, corresponding to a resolution of 2.8 × 10^?5 RIU for the overall refractive index range. Our analysis shows that the PCF-SPR probe can be used for lower refractive index detection.     

Micelle‐enhanced spectrofluorimetric method for quantification of entacapone in tablets and human plasma

In this paper, a simple and highly sensitive spectrofluorimetric method was developed and validated for the determination of entacapone (ETC). The proposed method is based on forming a highly fluorescent product through the reduction of ETC with Zn/HCl. The produced fluorophore exhibits strong fluorescence at λ_em 345 nm after excitation at λ_ex 240 nm. The use of fluorescence enhancers such as Tween‐80 and carboxy methyl cellulose (CMC) greatly enhanced the fluorescence of the produced fluorophore by 150% and 200%, respectively. Calibration curves showed good linear regression (r2 > 0.9998) within test ranges of 0.05–2.0 and 0.02–1.80 μg mL^?1 with lower detection limits of 1.27 × 10^?2 and 4.8 × 10^?3 μg mL^?1 and lower quantification limits of 4.21 × 10^?2 and 1.61 × 10^?2 μg mL^?1 upon using Tween‐80 and or CMC, respectively. The method was successfully applied to the analysis of ETC in its pharmaceutical formulations (either alone or in presence of other co‐formulated drugs). The results were in good agreement with those obtained using the official method. The methods were further extended to determine the drug in human plasma samples, and to study the pharmacokinetics of ETC. The paper is the first report on the spectrofluorimetric determination of entacapone.     

Selective turn‐on fluorescence assay of 6–thioguanine by using harmine‐modified silver nanoparticles

This article reports on a novel fluorescence resonance energy transfer (FRET) system between harmine and silver nanoparticles (AgNPs), in which harmine acts as the donor and AgNPs act as the acceptor. As a result of FRET, harmine fluorescence is quenched efficiently with a corresponding Stern–Volmer constant of 3.61 × 10¹¹ L/mol. It was found that upon addition of the anticancer drug, 6–thioguanine (6–TG), the fluorescence was recovered due to the competitive adsorption of this compound onto AgNPs. Based on this effect, a selective turn‐on fluorescence sensor was developed for the determination of 6–TG. Under optimum conditions, the enhanced fluorescence intensity displays a linear relationship with the concentration of 6–TG in the range 1.5 × 10^‐8–7.5 × 10^‐7 M with a detection limit of 9.7 nM. The developed method was applied to the determination of this drug in a pharmaceutical preparation and human plasma samples. Copyright © 2013 John Wiley & Sons, Ltd.     

Plasmonically Tunable Blue-Shifted Emission from Coumarin 153 in Ag Nanostructure Random Media: A Demonstration of Fast Dynamic Surface-Enhanced Fluorescence

Enhancement of intensity and wavelength tunability of emission are desirable features for light-emitting device applications. We report on the large and tunable blue shift (60 nm) in emission from an environment-sensitive fluorophore (Coumarin153) embedded in Ag plasmonic random media. Coumarin 153 having emission at 555 nm, show a systematic blue shift (to 542, 503 and 495 nm) upon infiltration into random media fabricated by Ag nanowires of different aspect ratio (hence, surface plasmon resonances at 426, 445 and 464 nm). The blue shift is due to the fast dynamic surface-enhanced fluorescence mechanism and can be tuned by controlling the surface plasmon resonance and hotspot density in random media. Enhanced emission at desired wavelength is achieved by using nanostructures having higher extinction coefficient but same-surface plasmon resonance. Ag nanostructures of different aspect ratio used for fabricating the random media are synthesized by chemical route.     

Tunable Surface Plasmon Resonance Sensor Based on Photonic Crystal Fiber Filled with Gold Nanoshells

We present a photonic crystal fiber (PCF)-based surface plasmon resonance (SPR) sensor, whose operating wavelength range is tunable. Gold nanoshells, consisting of silica cores coated with thin gold shells, are designed to be the functional material of the sensor because of their attractive optical properties. It is demonstrated that the resonant wavelength of the sensor can be precisely tuned in a broad range, 660 nm to 3.1 μm, across the visible and near-infrared regions of the spectrum by varying the diameter of the core and the thickness of the shell. Furthermore, the effects of structural parameters of the sensor on the sensing properties are systematically analyzed and discussed based on the numerical simulations. It is observed that a high spectral sensitivity of 4111.4 nm/RIU with the resolution of 2.45 × 10^?5 RIU can be achieved in the sensing range of 1.33–1.38. These features make the sensor of great importance for a wide range of applications, especially in biosensing.     

Exploring membrane organization and dynamics by the wavelength-selective fluorescence approach

Wavelength-selective fluorescence comprises a set of approaches based on the red edge effect in fluorescence spectroscopy which can be used to directly monitor the environment and dynamics around a fluorophore in a complex biological system. A shift in the wavelength of maximum fluorescence emission toward higher wavelengths, caused by a shift in the excitation wavelength toward the red edge of absorption band, is termed red edge excitation shift (REES). This effect is mostly observed with polar fluorophores in motionally restricted media such as very viscous solutions or condensed phases where the dipolar relaxation time for the solvent shell around a fluorophore is comparable to or longer than its fluorescence lifetime. REES arises from slow rates of solvent relaxation (reorientation) around an excited state fluorophore which is a function of the motional restriction imposed on the solvent molecules in the immediate vicinity of the fluorophore. Utilizing this approach, it becomes possible to probe the mobility parameters of the environment itself (which is represented by the relaxing solvent molecules) using the fluorophore merely as a reporter group. Further, since the ubiquitous solvent for biological systems is water, the information obtained in such cases will come from the otherwise 'optically silent' water molecules. This makes REES and related techniques extremely useful since hydration plays a crucial modulatory role in a large number of important cellular events, including lipid-protein interactions and ion transport. The interfacial region in membranes, characterized by unique motional and dielectric characteristics, represents an appropriate environment for displaying wavelength-selective fluorescence effects. The application of REES and related techniques (wavelength-selective fluorescence approach) as a powerful tool to monitor the organization and dynamics of probes and peptides bound to membranes, micelles, and reverse micelles is discussed.     

Study on the interaction between 2‐mercaptoethanol,dimercaprol and CdSe quantum dots

The interactions between 2‐mercaptoethanol, dimercaprol and CdSe quantum dots (QDs) in organic media have been investigated by spectral methods. The results showed that the fluorescence (FL) emission of CdSe QDs gradually decreased, with a slight red‐shift, after adding thiols to CdSe QDs solutions. With the increase of the concentrations of thiols, the resonance light scattering (RLS) signal of CdSe QDs had been strongly enhanced in the wavelength range 300–500 nm, which was confirmed by the formation of larger CdSe QDs particles. The effect of thiols on the FL emission of CdSe QDs could be described by a Stern–Volmer‐type equation with the concentration ranges 1.0 × 10^–6–7.5 × 10^–4 mol/L for 2‐mercaptoethanol and 1.0 × 10^–7–2.5 × 10^–5 mol/L for dimercaprol. The possible mechanism of the interaction was proposed according to the results of UV‐vis absorption and micro‐Raman spectroscopy. The results indicated that FL quenching was mainly attributable to the exchange of the QDs surface molecules. Copyright © 2008 John Wiley & Sons, Ltd.     

Highly effective protein detection for avidin-biotin system based on colloidal photonic crystals enhanced fluoroimmunoassay

There has been immense interest in both instruments and methods to enhance fluorescence signal and achieve highly sensitive fluoroimmunoassay (FIA). In this paper, we present a facile, low-cost and general method of biotinylated colloidal photonic crystal (PC) to improve the FIA of avidin (avidin FIA). The fluorescence signal intensity of the avidin FIA on the colloidal PC can be enhanced over two orders of magnitude relative to the control sample, attributed to the large surface area, resonance field and coherent scattering effect of the colloidal PC. The detection limit is shrunk to 1/69 of that of the control sample. Furthermore, the signal to interference ratio (S/I ratio) is increased because the band-edge induced fluorescence enhancement is wavelength-selective. The interference fluorescence does not go up proportionally while the signal is significantly enhanced by the colloidal PCs. It is believed that the colloidal PC modified with biotin can act as an effective material for a general and sensitive fluoroimmunoassay.     

Two‐channel near‐infrared fluorescence Ag+ ion sensing of a new star‐shaped dendrimer

A new near‐infrared fluorescence sensor PDI‐PD for Ag⁺ ions was successfully prepared and its structure characterized by ¹H nuclear magnetic resonance (NMR), ¹³C NMR and high‐resolution mass spectrometry; matrix‐assisted laser desorption/ionization time‐of‐flight mass spectrometry (HRMS MALDI‐TOF). The probe exhibited rapid, sensitive, and selective two‐channel fluorescence responses towards Ag⁺ ions and protons. The probe has a marked high binding affinity and high sensitivity for Ag⁺, with a detection limit of 1.4 × 10^?6 M. An approximately five‐fold enhanced core emission at 784 nm was attributed to fluorescence resonance energy transfer (FRET). The enhanced core emission of the probe with Ag⁺ ions based on photo‐induced electron transfer and FRET is discussed. In addition, the probe presented a visible colour change. All experimental results demonstrated that PDI‐PD is an efficient tool for the selective, sensitive and rapid detection of Ag⁺ ions and protons using two‐channel fluorescence responses.     

Ultra-high Sensitivity Plasmonic Nanosensor Based on Multiple Fano Resonance in the MDM Side-Coupled Cavities

We propose a compact plasmonic structure comprising a metal-dielectric-metal (MDM) waveguide coupled with a side cavity and groove resonators. The proposed system is investigated by the finite element method. Simulation results show that the side-coupled cavity supports a local discrete state and the groove provides a continuous spectrum, the interaction between them, gives rise to the Fano resonance. The asymmetrical line shape and the resonant wavelength can be easily tuned by changing the geometrical parameters of the structure. Moreover, we can extend this plasmonic structure by the double side-coupled cavities to gain the multiple Fano resonances. The proposed structure can serve as an excellent plasmonic sensor with a sensitivity of ～1900 nm/RIU and a figure of merit of about ～3.8?×?10⁴, which can find wide applications for nanosensors.     

Large and Ultrafast Optical Response of a One-Dimensional Plasmonic–Photonic Cavity

The resonant coupling of a localized surface plasmon mode and a cavity mode in a photonic crystal has been recently shown to strongly tailor the stationary optical response of gold nanoparticles. Here, we demonstrate that this can be further exploited for controlling light on an ultrashort time scale. The stationary and ultrafast optical responses of such a plasmonic–photonic cavity are investigated numerically. We show that the transient photo-induced change of the optical transmittance of a bare nanocomposite thin film can be amplified up to 60 times once resonantly coupled to the cavity mode in the hybrid device, despite the degradation of this mode due to absorption losses. In addition, different all-optical, ultrafast, efficient, and reversible photonic functions (increase or decrease of the signal intensity, transient spectral shift of the cavity mode) can be achieved depending on the spectral position of the transmitted mode tuned by varying the angle of incidence. The transient modification of the signal intensity is predicted to reach about 300 % after a subpicosecond rise time when the defect mode matches the plasmon resonance.