Purification and Properties of BANA Hydrolase H of Rabbit Skeletal Muscle,a New Enzyme Hydrolyzing α-N-Benzoylarginine-β-naphthylamide

Dialdehyde derivatives of cellulose (CE) and α-cyclodextrin (α-CD) were prepared by the periodate oxidation method. Linkage formation between cellulose dialdehyde (dial-CE) and bovine serum albumin (BSA) proceeded rapidly at pH 9.0 and gave a maximum yield at about 30 hr. Among the various amino compounds tested, ethylenediamine, hexylamine, hexamethylenediamine and BSA were bound effectively to the dial-CE in this order. As compared with the case of dial-CE, reactions between α-CD dialdehyde (dial-CD) and amino compounds proceeded rather slowly. Separation of dial-CD isomers linked with glycine by a DEAE-Sephacel column resulted in several peaks. However, the components of each fraction were not homogeneous. Reactions of dialdehyde derivatives with amino compounds were thought to produce a 4-oxa-azepine-type of complex.     

Separation of D-forms and L-forms of DL-aspartic acid derivatives by the enzyme subtilisin DY

The ability of the enzyme subtilisin DY for the synthesis of derivatives of DL-aspartic acid which are differently N and C-terminal protected and semiproducts of the peptide synthesis was investigated. The enzyme reaction was characterized by high yields and a comparatively short reaction time. Two of the substrates, Z-D,L-Asp-(OMe)₂ and PhAc-D,L-Asp-(OMe)₂, were hydrolyzed for about 15 min; the reaction time for Boc-D,L-Asp-(OMe)₂ was 2.5 h. The values for the MICHAELIS constants obtained for Z-D,L-Asp-(OMe)₂ (K_m = 0.576 mM) and PhAc-D,L-Asp-(OMe)₂ (K_m = 0.300 mM) showed a high affinity of the enzyme to the substrates. For Boc-D,L-Asp-(OMe)₂ the affinity of the enzyme is considerable lower (K_m = 14.07 mM). The results of these investigations can be effectively used for the separation of N-protected derivatives of D,L-aspartic acid and with a high probability also for other amino and racemic forms.     

Effect of Dipeptides on the Growth of <Emphasis Type="Italic">Oenococcus oeni</Emphasis> in Synthetic Medium Deprived of Amino Acids

Oenococcus oeni has numerous amino acid requirements for growth and dipeptides could be important for its nutrition. In this paper the individual or combined effect of dipeptides on growth of O. oeni X₂L in synthetic media deficient in one or more amino acids with L-malic acid was investigated. Utilization of dipeptides, glucose, and L-malic acid was also analyzed. Dipeptides were constituted by at least one essential amino acid for growth. Dipeptides containing two essential amino acids, except leucine, had a more favorable effect than free amino acids on the growth rate. Gly-Gly was consumed to a greater extent than Leu-Leu and a rapid exodus of glycine to the extracellular medium accompanied it. The microorganism could use glycine in exchange for other essential amino acids outside the cell, favoring growth. In the presence of Leu-Leu, the increase in glucose consumption rate could be related to the additional energy required for dipeptide uptake.     

Orinithine as a constituent of the peptidoglycan of Chloroflexus aurantiacus,diaminopimelic acid in that of Chlorobium vibrioforme f. thiosulfatophilum

L-Ornithine is the only diamino acid of the peptidoglycan of the gliding phototrophic Chloroflexus aurantiacus. The other constituents are L- and D-alanine, D-glutamic acid, N-acetyl-glucosamine and N-acetyl-muramic acid (in part as muramic acid-6-phosphate), all in approximate equimolar ratios to L-ornithine, aside from small amounts of glycine and histidine. Furthermore unlike typical Gram-negative bacteria, protein is not bound to this peptidoglycan. Instead, the rigid layer (sodium dodecyl sulfate insoluble cell wall fraction) contained large amounts of a complex polysaccharide consisting of sugar O-methyl ethers, hexoses and pentoses. Its binding site is presumably muramic acid-6-phosphate of the peptidoglycan.In contrast, in Chlorobium vibrioforme f. thiosulfatophilium, meso-diaminopimelic acid was found as the only diamino acid of this peptidoglycan. As with other Gramnegative bacteria, L- and D-alanine, D-glutamic acid, N-acetyl-glucosamine and N-acetyl-muramic acid (no muramic acid-6-phosphate) were observed in approximate equimolar ratios to meso-diaminopimelic acid, except a lower D-alanine content. The rigid layer of Chlorobium vibrioforme f. thiosulfatophilum contained protein, and there were no indications for a complex polysaccharide comparable to that of Chloroflexus aurantiacus.Abbreviations Ala alanine - A₂pm diaminopimelic acid - GC/MS combined gas-liquid chromatography/mass spectrometry - GlcNAc N-acetyl-glucosamine - Glu glutamic acid - Gly glycine - HF hydrofluoric acid - Lys lysine - MurNAc N-acetyl-muramic acid - Orn ornithine - SDS sodium dodecyl sulfate     

Minimal Defined Media for Vegetative Growth of the Acrasian Polysphondylium pallidum WS-320*

SYNOPSIS. Polysphondylium pallidum WS-320 grows indefinitely as vegetative amebae in a liquid medium where (a) substrates comprise sucrose, glycerol, acetate, lactate, citrate, and glutamate; (b) essential nutrients (riboflavin, lysine, glycine, and possibly several other amino acids that may be essential) are supplied. The growth thus supported (2 × 10⁶ cells/ml) is more than doubled by provision of a mixture of crude fatty acids, an acid hydrolysate of casein supplemented with B vitamins, purines, pyrimidines, and fat-soluble antioxidants.     

On the Molecular Weight of Polypeptide Chain of Sweet Potato β-Amylase

A number of N-acyl-L-proline derivatives were synthesized and their biological activities were investigated by using lettuce (Lactuca sativa L. cv. Sacramento) seedling test. A wide variety of these compounds promoted root growth at 25°C both under light and in darkness. Of the compounds tested, N-(2-ftuorobenzoyl)-L-proline methyl ester (4) showed the highest activity and caused a 270% increase in the root elongation compared to the control. N-(2-Naphthoyl)-L-proline methyl ester (14) promoted the root growth, while N-(1-naphthoyl)-L-proline methyl ester inhibited it. L-Proline, benzoic acid, and 2-naphthoic acid had no significant effect on lettuce seedlings. Compounds 4 and 14, and N-(2-chlorobenzoyl)-L-proline methyl ester (7) reduced the inhibitory effect of 1 ppm ABA on the root growth, while the D-isomer of 4 was less activite than compound 4. Compounds 4, 7, and 14 did not show any rescue-activity for the complete inhibition of germination that was caused by treating 10 ppm of ABA.     

Prokaryotes that grow optimally in acid have purine-poor codons in long open reading frames

In nucleic acids the N-glycosyl bonds between purines and their ribose sugar moities are broken under acid conditions. If one strand of a duplex DNA segment were more vulnerable to mutation than the other, then the archaeon Picrophilus torridus, with an optimum growth pH near zero, could have adapted by decreasing the purine content of that strand. Yet, P. torridus has an optimum growth temperature near 60°C, and thermophiles prefer purine-rich codons. We found that, as in other thermophiles, high growth temperature correlates with the use of purine-rich codons. The extra purines are often in third, non-amino acid determining, codon positions. However, as in other acidophiles, as open reading frame lengths increase, there is increased use of purine-poor codons, particularly those without purines in second, amino acid-determining, codon positions. Thus, P. torridus can be seen as adapting (a) to temperature by increasing its purines in all open reading frames without greatly impacting protein amino acid compositions, and (b) to pH by decreasing purines in longer open reading frames, thereby potentially impacting protein amino acid compositions. It is proposed that longer open reading frames, being larger mutational targets, have become less vulnerable to depurination by virtue of pyrimidine for purine substitutions.     

Antitumor complexes of platinum with carrier molecules. 2 [1]. Mixed complexes of amino acids and tert-butylamine

In the search for a fine modulation of cisplatin analogues we have synthesized complexes with two different inert ligands bound to platinum in the cis- position. This paper reports on compounds of formula cis-[PtCl₂(aaH)(tba)] (aaH, amino acid; tba, tert-butylamine). These complexes have been synthesized with the aim of obtaining liposoluble cisplatin analogues bound to natural carrier groups. The derivatives of glycine, D-alanine, L-threonine, and L-serine were found to be moderately active against murine P388 and L1210 leukemia models. The compound K[PtCl₃(tba)] was also found to be active against the same tumor models. Their activity and potency was, however, much lower than that of cisplatin.     

Variation of antimetabolite sensitivity with different carbon sources inBacillus subtilis

The susceptibility ofBacillus subtilis to amino acid analogues was found to be markedly influenced by the carbon source used in the test media. Thialysine inhibited the bacterium with a greater number of carbon sources than the other two analogues tested. 5-Hydroxylysine was inhibitory with glycerol, lactose,D-xylose,L-arabinose and soluble starch while ethionine showed toxicity with lactose,D-xylose andL-arabinose. None of these analogues were toxic at the levels tested whenD-galactose was used as carbon source. The bacterium was not susceptible to thialysine with glycerol, to 5-hydroxylysine withL-arabinose and to ethionine with lactose.     

Uptake of Amino Acids by Barley Leaf Slices: Kinetics, Specificity, and Energetics

Uptake of ¹⁴C-labelled _L-lysine. _L-arginine, _L-glutamic acid, _L-aspartic acid, and glycine was studied in 0.75 mm wide barley (Hordeum vulgare L. cv. Lise) leaf slices. After an initial period (10 min) of rapid accumulation amino acid uptake proceeded at a steady, lower rate for several hours. Uptake was stimulated by 10^?4M Ca^?2+ ions. Uptake was strongly _pH dependent with the following optima: aspartic acid _pH 3.5. glutamic acid _pH 4.1. glycine _pH 5.8, lysine _pH 6–7, and arginine _pH 5–8 (a broad plateau). The optimal temperature was about 30°C. and the temperature coefficient in the range 0–20gGC was 2.3–2.5. Concentration-dependence data gave uptake isotherms which appeared to be multiphasic for all the amino acids used. The amino acids inhibited each other in a competitive fashion, indicating that they were all transported by a single carrier system. Uptake of lysinc was strongly inhibited by 10^?4M 2.4-dinitrophenol. Lysine uptake was not stimulated by light under aerobic conditions. However, it was much reduced in the dark under anaerobic conditions. This reduction was almost compensated for by light. The light-stimulation of uptake under anaerobic conditions was abolished by 10^?5M 3-(3,4-dichlorophenyl) 1.1-dimethylurea.     

Utilization of organic compounds as the sole source of nitrogen by Thiobacillus thiooxidans

Thiobacillus thiooxidans DSM 504 was shown to grow with adenine, hypoxanthine, xanthine and uric acid as sole sources of nitrogen. Growth with these compounds was observed after lag periods of varying lengths, unless the cells had been previously grown with the same purine base. The disappearance of adenine was accompanied by a temporary accumulation of hypoxanthine in the medium. The utilization of purines was inhibited by ammonia (1 mM). Guanine, pyrimidines and some other organic compounds were not utilized.Non-standard abbreviation U-¹⁴C uniformly labeled by ¹⁴C     

Dipeptides as Nitrogen Sources for Drosera rotundifolia in Aseptic Culture

The growth of Drosera rotundifolia was studied in aseptic cultures with 17 dipeptides as the only nitrogen source. About half of the dipeptides were well or partly utilized. Compounds containing glycine, alanine, glutamic or aspartic acid are clearly more favourable than dipeptides containing proline. Arginyl-aspartic acid (1.25 mM) promoted growth more than inorganic nitrogen (1.25 mM of NH₄NO₃). Glycyl-alanine gave about the same growth response as NH₄NO₃. The inocules died rapidly in medium containing leucyl-tyrosine and dipeptides containing methionine and valine were also toxic. There was usually a clear correlation between the growth-retarding or growth-stimulating effect of the dipeptides and the effects of their amino acid components.     

Response of lactic acid bacteria to amino acid derivatives. II. Glycine

The response of five lactobacilli (for which glycine is an essential nutrient) to two tripeptides, five dipeptides, and seventeen other glycine derivatives has been tested over a range of concentrations and at four or five incubation times from 18 to 229 hours. In general the activities decreased with increasing concentrations and incubation times although in some cases they remained nearly constant, increased, or increased and then decreased. Hippuric acid, all of the dipeptides, and the tripeptide, l-leucylglycylglycine, exhibited greater activity than glycine for one or more of the organisms. These results may be interpreted to signify that (a) the apparent decrease in apparent glycine in hydrolyzed urines may be accounted for in part by the higher activity of hippuric acid in unhydrolyzed urines, and (b) some peptides may be utilized directly by lactic acid bacteria under some conditions.     

Chemical composition of Eubacterium alactolyticum cell wall peptidoglycan

The mechanism of lysis of Eubacterium alactolyticum cell walls by Streptomyces albus G enzyme was studied. The analysis of the peptide terminal groups and peptide subunits isolated from the cell wall digest, released during solubilization of the cell walls, revealed that lytic action of S. albus G enzyme was mainly due to D-alanyl-A₂pm endopeptidase, N-acetylmuramyl-L-alanine amidase, N-acetylmuramidase and N-acetylglucosaminidase. E. alactolyticum cell wall peptidoglycan is composed mainly of glucosamine, muramic acid, D-glutamic acid, L- and D-alanine, meso-diaminopimelic acid and glycine. The peptide subunit consists of L-alanyl-D-glutamyl-meso-A₂pm-D-alanine. D-Alanine is connected directly with the amino group of the meso-A₂pm residue of another peptide subunit. All of the L-amino groups of meso-diaminopimelic acid are involved in cross-linking.The possible structure of the peptide moiety of E. alactolyticum cell wall peptidoglycan is presented.     

Absolute Configurations of Marmelo Oxides

Our interest on engineering non-ribosomal synthetase responsible for SW-163 biosynthesis prompted us to determine the relative and absolute configuration of antitumor cyclic depsipeptide SW-163s. We first isolated and identified SW-163 homologs D, F and G as known compounds UK-63598, UK-65662 and UK-63052, respectively. Both enantiomers of the unusual constitutive amino acid, N-methylnorcoromic acid, were synthesized in chiral forms starting from (R)- and (S)-1,2-propanediol. The hydrolyzate of SW-163D, a major constituent of this family, was converted with Marfey’s reagent, 1-fluoro-2,4-dinitrophenyl-5-L-alanine-amide (L-FDAA), and the resulting mixture of amino acid derivatives was subjected to an LC/MS analysis. Compared with authentic samples, the analytical data unambiguously show that SW-163D consisted of L-Ala, D-Ser and (1S, 2S)-N-methylnorcoronamic acid. The remaining stereochemistry of the N-methylcysteine moieties was determined from NOE data.     

Transport of osmoprotective compounds in hybridoma cells exposed to hyperosmotic stress

Addition of osmoprotective compounds has a positive effect on growth and monoclonal antibody production in hyperosmotic hybridoma cell cultures. In order to better understand the processes involved in the osmoprotective response, uptake of the osmoprotective compounds glycine betaine, proline, sarcosine and glycine in mouse hybridoma cell line 6H11 during exposure to hyperosmotic stress was studied. Hyperosmotic stress (510 mOsmol/kg) was introduced through the addition of NaCl (100 mM) to the growth medium, and amino acid transport activity was measured immediately after transfer of the cells to the hyperosmotic medium. The osmoprotective capability of the four osmoprotectants tested was negatively affected if methylaminosobutyric acid (MeAiB), a specific substrate for amino acid transport system A, was simultaneously included in the hyperosmotic medium in equimolar amounts with one of the osmoprotective compounds. This was due to accumulation of MeAiB in the stressed cells, giving a significant reduction in the concentration of the osmoprotective compound inside the cells. Furthermore, addition of excess meAiB gave approx. 905 reduction in the initial rate of uptake of glycine betaine, while 40–50% reduction in the initial rate of uptake of proline, glycine and sarcosine. Similarly, addition of proline, glycine or sarcosine also gave a significant reduction in the initial rate of glycine betaine uptake. These results suggest that the four osmoprotective compounds share, at least in part, a common, MeAiB inhibitable carrier for transport into osmotically stressed hybridoma cells. This carrier is probably equal to amino acid transport system A.     

Synthesis of proteins and nucleic acids by the pea aphid Acyrthosiphon pisum (aphididae) in the absence of a full complement of dietary amino acids

Protein, nucleic acids, and nucleotide syntheses were studied in pea aphids, Acyrthosiphon pisum (Harris), by feeding them labeled ¹⁴C-amino acids and [5-³H]-orotic acid in sucrose. It was demonstrated that in the absence of dietary essential amino acids, aphids were capable of synthesizing nucleic acids, nucleotides, and proteins when provided with a single dietary amino acid in sucrose. It is suggested that other required amino acids were possibly supplied by the symbionts present in the pea aphid and/or were obtained from the amino acid pool in the hemolymph or glucose, one of the end products of sucrose digestion. Of the various amino acids tested, synthesis of measurable amounts of protein or other compounds occurred when alanine, aspartic acid, glutamic acid, glycine, proline, or serine were provided, but no synthesis occurred with cysteine.     

Die Aminosäuresequenz des Mureins von Staphylococcus epidermidis (Winslow and Winslow) Evans,Stamm 66

Zusammenfassung Das Murein eines aus Milch isolierten Stammes von Staphylococcus epidermidis weist folgende Molverhältnisse auf (auf- bzw. abgerundete Zahlen): Mur:GlcNH₂:Ala:Glu:Lys:Gly=1:1:3:1:1:4. Das Verhältnis D-Ala:L-Ala ist 1:2,03. Die Glutaminsäure liegt in der D-Konfiguration und als Amid vor.Durch die Isolierung und Identifizierung der Peptide des Partialhydrolysats des Mureins konnte die Aminosäuresequenz erschlossen werden. Die Sequenz des an die Muraminsäure gebundenen Tetrapeptides (L-Ala-D-GluNH₂-L-Lys-D-Ala) stimmt mit dem der meisten anderen Bakterien überein. Die Quervernetzung wird durch das Peptid (Gly)_4–5-L-Ala hergestellt, das mit dem N-terminalen Glycin an die Carboxylgruppe des D-Alanins und mit dem C-terminalen L-Alanin an die -Aminogruppe des Lysins zweier benachbarter Tetrapeptide gebunden ist. Die Dinitrophenylierung des Mureins ergab, daß 2% des Lysins (-Aminogruppe), 3% des gesamten Alanins und 7% des gesamten Glycins N-terminal vorliegen. Demnach ist die Quervernetzung nur zu rund 60% realisiert. Neben unvernetzten mehr oder weinger vollständigen Interpeptidbrücken kommen auch unvollständige Peptide vor, bei denen nur L-Alanin an die -Aminogruppe des Lysins gebunden ist. In mindestens 2% der Fälle fehlt die Interpeptidkette völlig.

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The amino acid sequence of the murein of Staphylococcus epidermidis (winslow and winslow) evans, strain 66

Summary A strain of Staphylococcus epidermidis was isolated from raw milk. Its murein contained muramic acid, glucosamine, alanine, D-glutamic acid, L-lysine and glucine at a molar ratio of about 1:1:3:1:1:4. The ratio D-Ala: L-Ala is 1:2.03. D-glutamic acid is present as an amide.By partial acid hydrolysis of the cell wall and subsequent isolation and identification of the peptides the amino acid sequence of the murein was elucidated. The tetrapeptide, bound to muramic acid is identical with that of most bacteria: L-Ala-D-GluNH₂-L-Lys-D-Ala. The crosslinking of the murein is performed by the peptide (Gly)_4–5-L-Ala. L-Ala is attached to the -aminogroup of lysine, while the N-terminal glycine is bound to the C-terminal D-alanine of an adjacent tetrapeptide. About 2% of lysine, 3% of alanine and 7% of glycine of the murein are dinitrophenylizable, indicating that about 2% of the tetrapeptides are not substituted by an interpeptide chain, and that 40% of the interpeptide chains are more or less incomplete (10% consist of L-alanine only) and are not bound to a C-terminal D-alanine.

     

Distribution of amino acids in the cellular fractions ofStaphylococcus aureus

WhenStaphylococcus aureus cells were labeled with a single radioactive amino acid for 20 minutes, the highest activity, except for alanine, leucine, and glycine, was found in the free pool. Significant amounts of the above amino acids and also valine and methionine were incorporated into the protein — cell wall fraction.Cells previously labeled with a single amino acid underwent a net loss of radioactivity when transferred to buffer, glucose, or complete medium. An exception was glycine. The greatest loss in activity occurred in the free pool.While some amino acids (alanine, cystine) were transferred from the free pool to the protein — cell wall fraction under all conditions tested, others (glutamic acid, proline) were transferred only under conditions of growth.Cells labeled with certain single amino acids and then transferred to a complete medium lost a significant portion of the label. The most extreme case noted was proline, but other amino acids also effluxed from the cell under these conditions.     

Amonabactin: a family of novel siderophores from a pathogenic bacterium

 Four peptide-based bis-catecholate siderophores, collectively known as the amonabactins, have been isolated from Aeromonas hydrophila. They have been fully characterized: tandem mass spectroscopy established the sequence of the amino acid components, chiral gas chromatographic mass spectra established the amino acid chirality, and two-dimensional NMR techniques determined the full connectivity and structure. Each of the amonabactins was synthesized and the synthetic material was compared to the natural product as a final proof of structure. These siderophores are bis-catecholates with the backbone composed of either tri- or tetrapeptides in the sequence (gly)-(L)-lys-(L)-lys-(D)-aro, where glycine is the optional amino acid attached to the N^ε of the N terminus lysine and aro is either tryptophan or phenylalanine. The ligand units, 2,3-dihydroxybenzamide groups, are attached to the N^ε amine of the C terminus lysine and either to glycine, if present, or to N^ε amines of the N terminus lysine. Each of the amonabactins supports growth of the organism under low-iron conditions in vitro and in serum. The architecture of these siderophores includes an inverted aromatic amino acid and unusual linkages which should prevent enzymatic hydrolysis of the peptide backbones. This, along with their ability to successfully compete for iron in serum, suggests a role in the pathogenicity of the organism. This paper is number 62 in the series Coordination Chemistry of Microbial Ion Transport. Details of the previous paper are given in [1]. Received: 6 June 1997 / Accepted: 9 September 1997