The Tipulidae (Diptera) of northern Morocco with a focus on the Rif region,including the description of a new species of Tipula (Lunatipula) and an updated checklist for Morocco

An overview of the Tipulidae known to occur in northern Morocco with an emphasis on the Rif mountains is given, incorporating new distribution data based on recently collected material in the area. Dolichopeza (Dolichopeza) hispanica, Tipula (Lunatipula) subpustulata, and Tipula (Yamatotipula) afriberia afriberia are recorded for the first time for the Rif. Tipula (L.) stimulosa Mannheims, 1973 and T. (Vestiplex) vaillanti vaillanti Theowald, 1977 are reported for the first time for the Rif and Morocco. Tipula (Lunatipula) pseudocinerascens Strobl, 1906 and Tipula (Savtshenkia) confusa van der Wulp, 1883 are recorded for the first time for the Rif, Morocco and North Africa. A new species of the subgenus Lunatipula, T. (L.) pjotri n. sp., is described and illustrated. Nephrotoma exastigma, previously reported for the Rif, seems to be absent in Morocco. Reports of Tipula (Emodotipula) obscuriventris Strobl, 1900 for Morocco actually refer to T. (E.) leo. This brings the number of Tipulidae for Morocco to 39 species and for the Rif to 28. An updated checklist of the Tipulidae of Morocco is provided.     

Age,growth and reproduction of Marcusenius pongolensis,Oreochromis mossambicus and Schilbe intermedius in an oligotrophic impoundment in Swaziland

The age, growth and reproductive biology of Marcusenius pongolensis, Oreochromis mossambicus and Schilbe intermedius were investigated in the Mnjoli Dam, Swaziland. Otolith annulus formation occurred in winter for M. pongolensis, and in spring/summer for O. mossambicus and S. intermedius. Maximum ages of 8, 6 and 8 years were recorded for M. pongolensis, O. mossambicus and S. intermedius, respectively. Growth was described by the von Bertalanffy growth model as L_t = 238.73(1 − exp^{−0.27(t+2.27}) mm fork length (FL) for M. pongolensis, L_t = 226.83(1 − exp^{−0.45(t+2.02)}) mm total length (TL) for O. mossambicus, and L_t = 214.59(1 − exp^{−0.60(t+1.20)}) mm FL for S. intermedius. Sexual maturity was estimated for male and female M. pongolensis at 134 mm FL and 119 mm FL, respectively. Marcusenius pongolensis matured within their first year. Female O. mossambicus and S. intermedius matured at 239 mm TL and 205 mm FL, corresponding to 2 and 4 years of age, respectively. Extended spawning periods, with two spawning peaks was observed for M. pongolensis, one in spring (September) and the second in autumn (March) and one peak over late‐summer for S. intermedius.     

Ras subfamily GTPases regulate development,aflatoxin biosynthesis and pathogenicity in the fungus Aspergillus flavus

Ras subfamily proteins are molecular switches in signal transduction pathways of many eukaryotes that regulate a variety of cellular processes. Here, the Ras subfamily, encoded by six genes, was identified in Aspergillus flavus: rasA, rasB, rasC, rab-33, rheb and rsr1. The rsr1 deletion mutant (∆rsr1), rheb deletion mutant (∆rheb) and double deletion mutant (∆rheb/rsr1) displayed significantly decreased growth and sporulation. Sclerotia formation was significantly decreased for ∆rheb or ∆rheb/rsr1 but increased for ∆rsr1. Aflatoxin production was significantly increased in ∆rheb but decreased in ∆rsr1 and ∆rheb/rsr1. We found that rsr1 and rheb are crucial for the pathogenicity of A. flavus. Quantitative proteomics identified 520 differentially expressed proteins (DEPs) for the ∆rsr1 mutant and 133 DEPs for the ∆rheb mutant. These DEPs were annotated in multiple biological processes and KEGG pathways in A. flavus. Importantly, we identified the cytokinesis protein SepA in the protein–protein interaction network of rsr1, and deletion mutants showed that SepA has pleiotropic effects on growth and AF biosynthesis, which may depend on Rsr1 for regulation in A. flavus. Our results indicated that these Ras subfamily proteins exhibited functional redundancy with each other but there were also differences in A. flavus.     

Dynamic light-scattering studies of internal motions in DNA. I. Applicability of the rouse-zimm model

The intermediate scattering function G(K,t) for any polymer model obeying a linear separable Langevin equation can be expressed in terms of the eigenvalues and eigenvectors of its normal coordinate transformation. An algorithm for the extract numerical evaluation of G(K,t) for linear Rouse-Zimm chains in the presence of hydrodynamic interaction has been developed. The computed G(K,t)² were fit to C(t) = A exp(?t/τA) + B, and apparent diffusion coefficients calculated according to D_app ≡ 1/(2τ_AK²). G(K,t)² was surprisingly well-fit by single-exponential decays, especially at both small and large values of Kb, where K is the scattering vector and b the root-mean-squared subunit extension. Plots of D_app vs K² in-variably showed a sigmoidal rise from D₀ at K² = O up to a constant plateau value at large K²b². Analytical expression for G(K,t), exact in the limit of short times, were obtained for circular Rouse-Zimm chains with and without hydrodynamic interaction, and also for free-draining linear chains, and in addition for the independent-segment-mean-force (ISMF) model. The predicted behaviors for G(K,t) at large Kb (or KR_G) was found in all cases to be single-exponential with 1/τ ∝ K² at large Kb, in agreement with the computational results. A simple procedure for estamating all parameter of the Rouse-Zimm model from a plot of D_app vs K² is proposed. Experimental data for both native and pH-denatured calf-thymus DNA in 1.0M Nacl with and without EDTA clearly plateau behavior of D_app at large values of K, in harmony with the present Rouse-Zimm and ISMF theories, and in sharp contrast to previous predictions based on the Rouse-Zimm model.     

Various X2-Tests of Homogeneity: Some Comments

Methodological issues in the analysis of incidence rates or prevalence proportions for count data, presented in a form of a sequence of 2×2 tables, corresponding to levels (strata) of a specified variable (risk factor) X, are discussed. Suppose λ_1i and λ_2i are the incidence rates of an event D in the ith stratum for populations 1 and 2, respectively. The homogeneity (null) hypothesis is formulated in the form: H_0:λ1i=λ_2i for all i (i = 1, 2, …, I). Three X²-tests for H₀ and their theoretical bases are discussed: X_Total² which is sensitive to alternatives HA :λ1i± λ2i for at least some i; X_Comb² which is sensitive to alternatives H A : λ1iλ2i² or < λ_2i but not both for all i; and X_Diff² which is sensitive to alternatives H_A:λ1i>λ2i³ for some i and λ_1i′ < λ_2i′ for some i′ (i≠i′). These statistics satisfy the relation X_Total² = X_Comb² + X_Diff². Also, X′²-statistic for pooled data is calculated, which in conjunction with X_Comb² can serve for detecting confounding. Although most of these techniques are known, they are rather scattered in the literature, and not always considered jointly, as it is emphasized in the present paper. It is hoped that these comments will be helpful to biostatisticians as well as to epidemiologists and medical researchers in the analysis of mortality and morbidity data. For illustration, two examples with large sets of epidemiological data are given.     

Interspecific interference and the functional response of four species of carnivorous stoneflies

1. A previous study compared the functional responses to their prey and intraspecific interference in mature larvae of Perlodes microcephalus, Isoperla grammatica, Dinocras cephalotes and Perla bipunctata. The present study extends this work by assessing interspecific interference between pairs of these species in equal numbers (one, two or three larvae per species) to provide total predator densities of two, four or six larvae. Baetis larvae as prey were replaced as they were eaten, and their density per predator was varied between 20 and 200 larvae. 2. The number of prey eaten by each competing species increased curvilinearly with prey density, the relationship being well described by a Type II model. Of the two constants in the model, handling time varied considerably between species, mean values being shortest for Perlodes, slightly higher for Isoperla, and much higher for Dinocras and Perla. It was not affected significantly either by predator density or the identity of the competing species. 3. Attack rate also varied between species and decreased with predator density. This decrease was slight for Perlodes, and also for Dinocras and Perla in competition with Isoperla. The decrease in Dinocras and Perla was similar to that for intraspecific interference. 4. The decrease in attack rate was described by a convex curve for Perlodes with the other three species and for Dinocras/Perla with Isoperla, but by a concave curve (negative power function) for Isoperla competing with the other three species, and for both Dinocras and Perla in competition with Perlodes. Prey consumption also decreased with predator density, the severity of competition with different species reflecting that for attack rate. 5. A comparison with previous results for intraspecific interference showed that the latter was dominant for Perlodes in all contests and for Dinocras or Perla competing with Isoperla, whilst interspecific interference dominated for Isoperla in all contests and for Dinocras and Perla competing with Perlodes. Both types of interference were applicable to competition between Dinocras and Perla. Isoperla was the least, and Perlodes the most, aggressive of the four species with Dinocras and Perla intermediate.     

Association of <Emphasis Type="Italic">iceA</Emphasis> and <Emphasis Type="Italic">babA</Emphasis> genotypes in <Emphasis Type="Italic">Helicobacter pylori</Emphasis> strains with patient and strain characteristics

Data on the geographic prevalence of Helicobacter pylori iceA and babA alleles in Eastern Europe are still relatively scant. The aim of this study was to evaluate the prevalence of iceA and babA genotypes in Bulgarian symptomatic patients. The iceA and babA genotypes were evaluated by PCR with pure cultures in strains from 196 and 181 patients, respectively. Mixed infections were found in 10.2% of all 196 patients. Prevalence of H. pylori genotypes in patients with single-strain infections was 69.3% for iceA1, 30.7% for iceA2, 82.4% for cagA ⁺, 89.2% for vacA s1, 10.8% for vacA s2, 39.8% for vacA m1, 60.2% for vacA m2 and 48.8% for babA2. Within the iceA1 positive strains, 94.3% and 88.5% were also vacA s1a and cagA positive, respectively. Of the babA2 positive strains, 100.0%, 92.4% and 72.2% were also vacA s1a, cagA and iceA1 positive, respectively. Ulcer patients had more often strains with cagA positive status and vacA s1a allele. Although neither iceA1 nor babA2 were more common in ulcer patients, the combination of both alleles was more frequent (48.1%) in the ulcer patients than in the rest (28.7%). Clarithromycin susceptible strains had more often iceA1 allele (74.4%) than the resistant strains (55.3%). In conclusion, the results demonstrated a high prevalence of virulent H. pylori in Bulgaria. Both iceA1 and babA2 genotypes were associated with other virulence factors of H. pylori and, in addition, the iceA1 allele was associated with the strain susceptibility.     

Distribution of hereditary blood groups among Indians in South America. I. In Ecuador

Blood specimens were procured from 658 Quechua, 36 Colorado, 233 Jivaro, 244 Cayapa, and 48 Secoya Indians of Ecuador. These were examined for antigens in the A-B-O, M-N-S-s, P, Rh-Hr, Lutheran, K-k, Lewis, Duffy and Kidd systems and for Diego (Di^a), Wright (Wr^a), and Berrens (Be^a) agglutinogens as well. Hemolystes were prepared and studied for hemoglobin types and the serum samples were tested for haptoglobins and transfserrins. Gene frequencies are high for O, M, s, R¹, (CDe), R² (cDE), Lu^b, k, Kp^b, Le^b and Fy^a; and low or absent for A, B, N, S, Mi^a, Vw, Mt^a, R⁰ (cDe), V (ce^s), Lu^a, K, Kp^a, Le^a, Fy^b, Js^a, Wr^a and Be^a. The Diego (Di^a) gene is present but its frequency varies greatly from tribe to tribe. Gene frequency Hp¹ is well within the range previously reported for Indians in Middle America excepting the Colorado in which population the frequency of 0.889 is unusually high. All 723 serum specimens tested for transferrins were C or CD. No D or BC types were found. All Ecuadorian Indian bloods tested electrophoretically contained only hemoglobin (A) as a major component.     

Distribution of hereditary blood groups among Indians in South America. IV. In Chile with inferences concerning genetic connections between Polynesia and America

This is the fourth paper in a series on the distribution of blood groups among Indians of South America. It reports the findings on the Indians of Chile and the Polynesians of Chile's Easter Island. Blood specimens were procured from the following putatively pure Indians and unmixed Polynesians: 44 Alacaluf of Puerto Eden, Isla Wellington, 141 Mapuche (Araucanian) of Lonquimay, Malleco Province, 80 Atacameños of Antofagasta Province, and 45 Polynesians of Easter Island. These 310 samples were tested for blood factors in the A-B-O, M-N-S-s, P, Rh-Hr, Lutheran, K-k, Lewis, Duffy, Kidd and Diego systems, and for the Wright (Wr^a) agglutinogen. Serum samples were tested for haptoglobins and transferrins. Hemolysates prepared from the blood clots were tested for hemoglobin types. The results are presented as phenotype incidences and calculated gene frequencies in appropriate tables. Locations of the populations from which blood samples were procured are shown on two maps. The high frequencies for the O gene usually reported for South American Indians obtain in putatively pure Chilean Indians but A¹ is high in Easter Island Polynesians. In both Indians and Polynesians M, s, R¹ (CDe), R² (cDE), Lu^b, k, Le^H, and Fy^a gene frequencies are high and B, N, S, Mi^a, Vw, Rº (cDe), r (cde), Lu^a, K, Le¹, Fy^b, and Wr^a (Ca) are low or absent. The Diego (Di) gene is present in the Mapuche and Atacameños but absent in the Alacaluf and Polynesians. Hp¹ gene frequencies were determined only in the Alacaluf and Atacameños, in which they are 0.48 and 0.67 respectively. Transferrins were determined for the Alacaluf and Atacameños Indians and all were classified as Tf C. All Chilean Indian and Polynesian specimens were tested electrophoretically for hemoglobin types and all contained only hemoglobin (A) as a major component.     

Investigation of the diversity of effector genes in the banana pathogen,Fusarium oxysporum f. sp. cubense,reveals evidence of horizontal gene transfer

It is hypothesized that the virulence of phytopathogenic fungi is mediated through the secretion of small effector proteins that interfere with the defence responses of the host plant. In Fusarium oxysporum, one family of effectors, the Secreted In Xylem (SIX) genes, has been identified. We sought to characterize the diversity and evolution of the SIX genes in the banana‐infecting lineages of F. oxysporum f. sp. cubense (Foc). Whole‐genome sequencing data were generated for the 23 genetic lineages of Foc, which were subsequently queried for the 14 known SIX genes (SIX1–SIX14). The sequences of the identified SIX genes were confirmed in a larger collection of Foc isolates. Genealogies were generated for each of the SIX genes identified in Foc to further investigate the evolution of the SIX genes in Foc. Within Foc, variation of the SIX gene profile, including the presence of specific SIX homologues, correlated with the pathogenic race structure of Foc. Furthermore, the topologies of the SIX gene trees were discordant with the topology of an infraspecies phylogeny inferred from EF‐1α/RPB1/RPB2 (translation elongation factor‐1α/RNA polymerase II subunit I/RNA polymerase II subunit II). A series of topological constraint models provided strong evidence for the horizontal transmission of SIX genes in Foc. The horizontal inheritance of pathogenicity genes in Foc counters previous assumptions that convergent evolution has driven the polyphyletic phylogeny of Foc. This work has significant implications for the management of Foc, including the improvement of diagnostics and breeding programmes.     

Mating type‐dependent partner sensing as mediated by VEL1 in Trichoderma reesei

Sexual development in the filamentous model ascomycete Trichoderma reesei (syn. Hypocrea jecorina) was described only a few years ago. In this study, we show a novel role for VELVET in fungi, which links light response, development and secondary metabolism. Vel1 is required for mating in darkness, normal growth and conidiation. In light, vel1 was dispensable for male fertility but essential for female fertility in both mating types. VEL1 impacted regulation of the pheromone system (hpr1, hpr2, hpp1, ppg1) in a mating type‐dependent manner and depending on the mating partner of a given strain. These partner effects only occurred for hpp1 and hpr2, the pheromone precursor and receptor genes associated with the MAT1‐2 mating type and for the mating type gene mat1‐2‐1. Analysis of secondary metabolite patterns secreted by wild type and mutants under asexual and sexual conditions revealed that even in the wild type, the patterns change upon encounter of a mating partner, with again distinct differences for wild type and vel1 mutants. Hence, T. reesei applies a language of pheromones and secondary metabolites to communicate with mating partners and that this communication is at least in part mediated by VEL1.     

Cytogeography of European perennial species of Cyanus (Asteraceae)

To reveal the general cytogeographical pattern of Cyanus section Protocyanus in Europe, DNA ploidy and/or chromosome numbers were newly examined for 160 populations by flow cytometry (450 plants) and/or chromosome counting (30 plants). Furthermore, previously published karyological data were revised (236 records). Our analyses confirmed chromosome counts of 2n = 22 for all newly investigated samples of the C. triumfetti group (the records for C. semidecurrens and C. ternopoliensis are new), C. diospolitanus and C. achtarovii; 2n = 44 for C. montanus and C. mollis; and 2n = 20 for C. lingulatus, C. napulifer, C. nissanus, C. orbelicus, C. thirkei, C. tuberosus and C. velenovskyi. The chromosome count of 2n = 20 is the first report for C. epirotus. The cytotype 2n = 40 was newly recorded for the Crimean endemic C. fuscomarginatus and Calabrian and Greek populations of C. graminifolius. The cytotypes 2n = 20 and 2n = 40 were confirmed for C. pindicola. For the first time triploidy (2n～3x～30) was found in C. nissanus, C. thirkei and in a newly discovered hybrid, C. epirotus × C. graminifolius. Two contrasting ecogeographical patterns emerged: cytotypes derived from the base chromosome number x = 11 (2n = 22, 44) are widespread in northern latitudes and ecologically diverse, whereas cytotypes with x = 10 (2n = 20, 30, 40) are confined to mountains in southern Europe. In general, tetraploids have smaller ranges than diploids. The new combinations Cyanus section Protocyanus (Dobrocz.) Ol?avská comb. nov. and Cyanus ternopoliensis (Dobrocz.) Ol?avská comb. nov. are provided. © 2013 The Linnean Society of London, Botanical Journal of the Linnean Society, 2013, 173 , 230–257.     

Phylogenetic position of Madagascan species of Acacia s.l. and new combinations in Senegalia and Vachellia (Fabaceae,Mimosoideae, Acacieae)

The recent worldwide effort to transfer all non‐Australian taxa of Acacia s.l. mostly to the genera Senegalia and Vachellia follows the acceptance of the proposed re‐typification of the genus with an Australian species. The Madagascan species have, as yet, not been included in phylogenetic studies of Acacia s.l. and their position in the new generic classification of Acacia s.l. is therefore still unclear. In this study, plastid DNA sequence data were generated for seven Madagascan species, included in existing matrices for Acacia s.l. and analysed to assess the placement of these species. The results indicate that the Madagascan species are placed either in Senegalia or Vachellia and conform to the morphological characters used to distinguish these genera, despite some taxa having unusual red flowers. New combinations are formalized for Senegalia baronii , S . hildebrandtii , S . kraussiana ssp. madagascariensis , S . menabeensis , S . meridionalis , S . pervillei , S . pervillei ssp. pubescens , S . polhillii , S . sakalava , S . sakalava ssp. hispida , V achellia bellula , V . myrmecophila and V . vigueri . Nomenclatural errors are also corrected for three African taxa and, as such, new combinations are provided for Senegalia fleckii , S . hamulosa and V achellia theronii . © 2015 The Linnean Society of London, Botanical Journal of the Linnean Society, 2015, 179 , 288–294.     

Wave speeds of density dependent Nagumo diffusion equations – inspired by oscillating gap-junction conductance in the islets of Langerhans

The equation u_t=(D(u)u_x)_x+f(u) arises in several biological examples and is known to have wave solutions for appropriate D and f. We give here a new formula for finding an approximation to the wave speed, relevant for comparing experiments with model simulations. This is done in details for the simple example D(u)=u+k and an N-shaped f, derived from a model of coupled pancreatic -cells, where the coupling conductance follows the electrical activity as it is found in experiments. On the way, we claim that the wave speed does not depend on the parameter g_K,ATP, mimicking the glucose concentration in the islet, in sharp contrast to the claim set forth in the article by Aslanidi et al. [4].     

CHROMOSOME NUMBERS IN CHIHUAHUAN DESERT CACTACEAE. TRANS-PECOS TEXAS

Chromosome numbers are presented for 100 collections of Cactaceae from the Trans-Pecos region of Texas. A total of 65 taxa representing 52 species and 12 genera were counted, including first reports for 45 taxa and new ploidy levels for four taxa. Notable among those listed are counts for Opuntia schottii var. grahamii (n = 11, ca. 22), O. stanlyi (n = 22), O. arenaria (n = 11), O. phaeacantha var. spinosibacca (n = 22), O. lindheimeri var. lindheimeri (n = 11), O. strigil (n = 11), Echinocereus enneacanthus var. cf. dubius (n = ca. 22), E. pectinatus var. neomexicanus (n = 22), and Thelocactus bicolor var. bicolor (n = 22). Endomitosis was found to be present in O. phaeacantha var. spinosibacca, Mammillaria pottsii, and Neolloydia intertexta var. dasyacantha. Meiotic irregularities were noted in some species belonging to the genera Opuntia and Echinocereus. Phytogeographic considerations are inferred from the chromosomal data for O. polyacantha, O. lindheimeri, and O. ficusindica. A base number of x = 11 in Cactaceae is supported.     

Expression analyses of Arabidopsis oligopeptide transporters during seed germination, vegetative growth and reproduction

AtOPT promoter-GUS fusions were constructed for six of the nine known, putative oligopeptide transporters (OPTs) in Arabidopsis thaliana and used to examine AtOPT expression at various stages of plant development. AtOPT1, AtOPT3, AtOPT4, AtOPT6 and AtOPT7 were expressed in the embryonic cotyledons prior to root radicle emergence. Except for AtOPT8, which gave weak expression, all AtOPTs were strongly expressed in post-germinative seedlings with strongest expression in vascular tissues of cotyledons and hypocotyls. Preferential expression of AtOPTs in vascular tissues was also observed in cotyledons, leaves, hypocotyls, roots, flowers, siliques, and seed funiculi of seedlings and adult plants. Differential tissue-specific expression was observed for specific AtOPTs. For example, AtOPT1, AtOPT3 and AtOPT8 were uniquely expressed in pollen. Only AtOPT1 was expressed in growing pollen tubes, while only AtOPT6 was observed in ovules. AtOPT8 was transiently expressed in seeds during early stages of embryogenesis. Iron limitation was found to enhance expression of AtOPT3. These data suggest distinct cellular roles for specific AtOPTs including nitrogen mobilization during germination and senescence, pollen tube growth, pollen and ovule development, seed formation and metal transport.