生态预报: 生态学的一个前沿领域

生态预报对于资源,环境的决策和管理将起着越来越重要的作用。计算机科学和定量分析的进步,生态学理论的发展以及新技术的应用增加了人类预测生态系统变化的能力。本文介绍了有关生态预报的内涵,相关研究进展及案例,提出生态预报是生态学的一个重要前沿领域,也将是今后生态学研究的一个重要努力方向。     

Honeyeater ecology: An introduction

Abstract

Nectar-feeding birds are often used for testing quantitative models but most of this work has been done on groups in the Northern Hemisphere and only recently have workers turned their attention to honeyeaters (Meliphagidae). Predictions of upper size limits derived from North America appear inappropriate and possible reasons for this are discussed. One; the suggested evolutionary links between nectar-feeding birds and their flowers, may not be as close for honeyeaters but further work is needed. Other aspects such as research on community and social relationships among honeyeaters appears rewarding but little is known.

We caution workers on expecting agreement with wide generalisations in any topic because of known variability in movements and diet in different areas and for different individuals.     

An answer to a complex problem: cloning the mouse t-complex responder

The t-complex is maintained in wild mouse populations by its high transmission (up to 99%) from heterozygous males and provides an example of ``meiotic drive'. Its molecular basis has remained obscure despite long and intensive study. In a major advance, the t-complex responder gene, thought to be the key gene on which several distorters act, has now been cloned. Received: 14 April 2000 / Accepted: 4 May 2000     

Biology of cancer: some questions to answer

Though great advances in cancer biology have taken place through these years, some fundamental questions are still to be explained. Some observations in this regard are discussed in the present paper. In the course of experimental studies on hormonal stimulation of target cells, it was observed that goat granulosa cells showed differential proliferative response to sustained stimulation by oLH and hCG in culture. oLH caused cells to proliferate whereas hCG failed to stimulate the cells though both the gonadotropins have common receptors on the target cell. Further studies might throw some light on the mechanism of signal transduction in cell biology and neoplasia. A question is also posed as to how to interpret thermodynamically the sustained growth of cancer vis-a-vis the host.     

Plant physiological ecology: An essential link for integrating across disciplines and scales in plant ecology

A sizeable number of scientists and funding organisations are of the opinion that the relevance of plant physiological ecology as an important discipline has declined to the point that it is no longer considered as one of the important topics of ecological research. Plant physiological ecology is typically associated with the autecological plant research conducted during the latter portion of the 20th century or, even worse, simply with gas exchange measurements. However, taking a closer look, it becomes obvious that, by focusing on the intermediate integration levels (individuals, populations), this discipline represents an essential link between the high integration levels (communities, ecosystems, biosphere) and the disciplines at the bottom of the complexity hierarchy (physiology, molecular biology). In this paper we show that the principal question of all ongoing community and ecosystem level research – What is the mechanistic background of vegetation composition, biodiversity structure and dynamics and how is this linked to fluxes of matter at the community and higher levels of organisation? – can only be answered if the mechanism of interactions between the relevant organisms are understood. In consequence, the classical discipline of plant physiological ecology will continuously develop into a truly interdisciplinary experimental ecology of interactions and its importance will rather increase than diminish. Promising activities of this kind are already underway. Scientists needed for this new direction should have a rather broad scientific perspective, including knowledge and experience in fields outside of typical ecological research, instead of being specialists for single ecophysiological aspects.     

Box-Jenkins analysis for shark landings in Costa Rica

Sharks are highly vulnerable to intense and prolonged fishery extraction. This article analyzes the data on shark landings from the artisan fishing fleet on Costa Rica's Pacific coast between 1988 and 1997. The data come from an invoicing system administered by the Costa Rican Fisheries Institute (Instituto Costarricense de la Pesca y Acuacultura, INCOPESCA). Pacific coast shark fishing during the period under study represented approximately 20% of the total national fisheries volume. According to data from the invoicing system, the Northern Pacific region was the most productive, reporting 58% of the shark catch nationwide. Within this region, shark fishing in Papagayo Gulf represented 91% and 53% of the landings by fishery region and nationwide, respectively. The mid-sized and advanced (length of boat > 10 meters) artisan fishing fleets reported 96% of the shark catches in the zone. The study of shark fisheries in the Papagayo Gulf zone is crucial for an understanding of fishery dynamics for this resource at the national level. A monthly chronological series was constructed with the landings in the Papagayo Gulf zone, and a Univariate Box-Jenkins (UBJ) Model was estimated for first-order moving averages MA(1) with a seasonal component of the Yt = lamda(t-1) + gammaS12 + a(t) type.     

Aspects of plant intelligence: an answer to Firn

In a recent 'Invited Review', I stated the case for plant intelligence, provided definitions and outlined some of the consequences, illustrating them with examples. A short critique of this concept by Firn is given in the preceding 'Viewpoint' and rebuttals of the criticisms it contains are presented in the present article. The importance of plant intelligence as an emergent property resulting from interactions and communication of the component tissues is re-stated. The contentions made by Firn that plants are collectives of physically joined organs but acting in relative isolation of each other is subject to critical analysis and found to be contradicted by much established literature. Viewing plants as expressing intelligent behaviour should lead to better understanding of their ecological success and indicate experiments to test the basic concept.     

An integrative approach to species discovery in odonates: from character‐based DNA barcoding to ecology

Modern taxonomy requires an analytical approach incorporating all lines of evidence into decision‐making. Such an approach can enhance both species identification and species discovery. The character‐based DNA barcode method provides a molecular data set that can be incorporated into classical taxonomic data such that the discovery of new species can be made in an analytical framework that includes multiple sources of data. We here illustrate such a corroborative framework in a dragonfly model system that permits the discovery of two new, but visually cryptic species. In the African dragonfly genus Trithemis three distinct genetic clusters can be detected which could not be identified by using classical taxonomic characters. In order to test the hypothesis of two new species, DNA‐barcodes from different sequence markers (ND1 and COI) were combined with morphological, ecological and biogeographic data sets. Phylogenetic analyses and incorporation of all data sets into a scheme called taxonomic circle highly supports the hypothesis of two new species. Our case study suggests an analytical approach to modern taxonomy that integrates data sets from different disciplines, thereby increasing the ease and reliability of both species discovery and species assignment.     

Poliovirus susceptibility in cultured cells--an answer to Enders

Poliovirus is the causative agent of poliomyelitis. It replicates efficiently in the neurons in the central nervous system and produces severe pathological lesions. It cannot replicate well in the non-neural tissues. In spite of this strict neurotropism in vivo, however, it can replicate in cells of monolayer cultures derived from almost any tissues of primates as Enders and colleagues initially shown. It was supposed that cellular changes during the process of cultivation were required for acquisition of susceptibility. This question remained unsolved for a long time. We have recently shown that cells in culture acquire poliovirus susceptibility by loosing rapid and robust interferon response that has been normally maintained in tissues in vivo.     

Lysosomal enhancement: A CLEAR answer to cellular degradative needs

Comment on: Sardiello M, et al. A gene network regulating lysosomal biogenesis and function. Science 2009; 325:473-7.     

Bacterial pathogenesis: the answer to virulence is in the pore.

A wide variety of Gram-negative bacterial pathogens use a 'type III' protein secretion system to deliver bacterial virulence factors into host cells. Recent results suggest that Gram-positive pathogens may employ similar methods to deliver virulence factors into host cells.     

FiRe and microarrays: a fast answer to burning questions

FiRe is a user-friendly Excel macro designed to survey microarray data rapidly. This software interactively assembles data from different experiments and produces lists of candidate genes according to patterns of gene expression. Furthermore, macros bundled with FiRe can compare lists of genes, merge information from different spreadsheets, link candidates to information available from web-based databases, and produce heat-maps for easy visualization of microarray data. FiRe is freely available at http://www.unifr.ch/plantbio/FiRe/main.html .     

An algorithm for a decomposition of weighted digraphs: with applications to life cycle analysis in ecology

In the analysis of organism life cycles in ecology, comparisons of life cycles between species or between different types of life cycles within species are frequently conducted. In matrix population models, partitioning of the elasticity matrix is used to quantify the separate contributions of different life cycles to the population growth rate. Such partition is equivalent to a decomposition of the life cycle graph of the population. A graph theoretic spanning tree method to carry out the decomposition was formalized by Wardle [Ecology 79(7), 2539–2549 (1998)]. However there are difficulties in realizing a suitable decomposition for complex life histories using the spanning-tree method. One of the problems is the occurrence of life cycles that contain contradictory directions that defy biological interpretation. We propose an algorithmic approach for decomposing a directed, weighted graph. The graph is to be decomposed into two parts. The first part is a set of simple cycles that contain no contradictory directions and that consist of edges of equal weight. The second part of the decomposition is a subgraph in which no such simple cycles are obtainable. When applied to life cycle analysis in ecology, the proposed method will guarantee a complete decomposition of the life cycle graph into individual life cycles containing no contradictory directions. Although the research described in this article has been funded in part by the United States Environmental Protection Agency through STAR cooperative agreement R-82940201-0 to the University of Chicago, it has not been subjected to the Agency’s required peer and policy review and therefore does not necessarily reflect the views of the Agency and no official endorsement should be inferred.