ABI 1700芯片分析系统在基因差异表达研究中的应用

应用化学发光法标记技术分别对正常和临床慢性髓细胞性白血病（chronic myelogenous leukemia,CML）病人骨髓单个核细胞的RNA进行标记,然后与ABI的人全基因组表达谱芯片杂交,对于杂交后所得到的荧光信号数据,应用1700芯片分析系统对其进行生物信息学分析.实验结果表明,ABI1700芯片分析系统可以对基因芯片杂交后得到的差异表达基因进行疾病学分类和生物功能分类分析,同时还发现与CML相关的差异表达基因75个,因此ABI1700芯片分析系统在芯片研究领域中具有重要的应用价值.     

小鼠2-细胞胚胎ATP合成酶6基因特异表达分析及鉴定

合子基因组活化是小鼠胚胎早期发育由细胞质调控向核调控转变的关键 .小鼠合子基因组活化发生在 2 细胞胚胎阶段 ,通过对 2 细胞胚胎阶段特异性表达基因的分析 ,可以从分子水平上揭示早期小鼠胚胎的发育机理 .用DD RTPCR技术 ,从单个小鼠 2 细胞胚胎与成熟卵母细胞 (MII细胞 )中分离了 2个差异片段 ,片段 2同小鼠睾丸中表达的一个未知片段具有高度同源性 .经过cDNA文库构建、筛选 ,分离到其全长cDNA .序列分析结果表明 ,该基因为小鼠ATP合成酶亚单位 6基因 .ATP合成酶亚单位 6基因由线粒体DNA编码 ,与细胞内ATP的合成相关 .小鼠 2 细胞胚胎特异表达的ATP合成酶亚单位 6基因可能与胚胎正常发育相关     

辛伐他汀对IFN-γ 诱导的人外周血单个核细胞OX40L 表达的影响

目的:探讨经IFN-γ刺激后,人外周血单个核细胞OX40L表达的变化,以及辛伐他汀对单个核细胞OX40L表达的影响.方法:将实验标本随机分为2组,分别干扰素-γ(IFN-γ)刺激组、辛伐他汀干预组.应用RT-PCR及Western blotting技术,观察IFN-γ诱导的人外周血单个核细胞OX40L表达情况及辛伐他汀对人单个核细胞OX40L表达的影响.结果:1.1000U/mlIFN-与人单个核细胞共同培养24h后,OX40L mRNA和蛋白水平的表达明显增加.2.预先给予10 mol/L的辛伐他汀干预1h可以明显降低IFN-诱导的OX40L表达.结论:IFN-可诱导人单个核细胞OX40L表达.辛伐他汀可以抑制IFN-诱导人单个核细胞OX40L表达的增强,从而可能抑制了OX40L信号通路介导的与炎症有关的血管损伤,延缓动脉粥样硬化的进程.     

CDA基因沉默对人慢性髓系白血病细胞增殖和凋亡的影响

目的:探讨胞苷脱氨酶(CDA)基因沉默在治疗人慢性髓系白血病(CML)中的潜在价值。方法:通过RT-PCR和Western blot检测CML患者和造血干细胞移植供体的骨髓单个核细胞中的CDA表达。对CML KCL-22细胞系转染shRNA和过表达CDA的p BS/U6-Neo质粒来诱导CDA基因沉默或过表达。通过细胞计数试剂盒8(CCK-8)测定和细胞集落形成实验评价细胞增殖,通过流式细胞仪检测细胞凋亡。此外,将0.2 m L不同处理的细胞悬浮液(106个细胞/m L)注射到裸鼠中建立裸鼠肿瘤异种移植模型。结果:与造血干细胞移植供体相比,CML患者的骨髓单个核细胞中的CDA m RNA和蛋白表达显著升高(P 0.05)。转染shRNA-CDA显著降低了KCL-22细胞的细胞活力和细胞集落数(P0.05)。与对照组(4.32%)相比,shRNA-CDA组(13.45%)的细胞凋亡率显著升高(P0.05)。与对照组相比,shRNA-CDA组的BCL-2蛋白表达水平显著降低,而cleaved caspase-3显著升高(P0.05)。与对照组相比,shRNA-CDA组的PI3K蛋白表达水平和Akt磷酸化水平显著降低(P0.05)。接种30 d后,与对照组相比,shRNA-CDA组裸鼠的肿瘤重量和肿瘤体积均显著降低(P0.05)。结论:CDA在人慢性髓系白血病中高表达,CDA基因沉默可在体内和体外抑制肿瘤细胞的生长。其机制与抑制PI3K/Akt信号通路的激活有关。     

SLE患者PBMC凋亡状态及相关基因表达的研究

探讨外周血单个核细胞(PBMC)凋亡及其基因调控在系统性红斑狼疮(systemic lupus erythematosus,SLE)发病机制中的作用.用流式细胞仪(FCM)检测PBMC凋亡百分率及T细胞亚群的凋亡状态;用RT-PCR检测PBMC bcl-2和bax的mRNA表达;用FCM检测凋亡相关基因bcl-2,bax,fas,p53和c-myc的蛋白表达.结果显示,SLE患者PBMC凋亡百分率明显高于正常人,且活动期患者高于非活动期患者.SLE活动期患者CD4+,CD8+T细胞数明显低于正常人;非活动期患者CD8+T细胞数明显低于正常人,而CD4+T细胞数与正常人比较无统计学差异;SLE患者PBMC bcl-2和bax mRNA表达与正常人比较无统计学差异;SLE患者PBMC bcl-2,bax和fas蛋白表达明显高于正常人,p53和c-myc蛋白表达在各组之间无统计学差异.SLE患者PBMC凋亡百分率增高、外周血T细胞亚群的异常及bcl-2,bax和fas蛋白表达增高,在SLE发病机制中可能起了一定的作用.     

五指山小型猪单个核细胞表面α Gal抗原表达差异的分析

利用猪的器官为挽救脏器终末衰竭病人而进行的异种移植是有效救治病人的途径之一.由于猪细胞表面存在的α1,3半乳糖会引起超急性免疫排斥反应,导致移植器官最终被移植受体排斥.除人类和旧大陆猴外,所有哺乳动物细胞表面都有αGal半乳糖表达,但个体间表达量存在显著差异.为研究近交系五指山小型猪细胞表面α1,3半乳糖表达的个体差异,本实验利用FITC-isolectin进行荧光标记,通过流式细胞术以及激光共聚焦分析,对14例5月龄猪样本外周血单个核细胞表面的α1,3半乳糖水平进行检测.利用猪肾上皮PK15细胞确定FITC-isolectin标记的最适浓度为25ng/μl(细胞标记效率大于85%).结果显示,14头猪外周血单个核细胞表面α1,3半乳糖的表达差异范围在1.25～2.09倍之间,远低于普通非近交系猪的个体差异.本研究为利用近交系五指山小型猪作为异种器官移植的研究材料提供了基础数据.     

肝癌患者单个核细胞线粒体DNA拷贝数与抗氧化能力的变化

目的:探讨肝癌患者单个核细胞(PBMC)线粒体DNA(mt DNA)拷贝数的变化及其与机体抗氧化能力的关系。方法:用Ficoll Hypaque离心法分离外周血单个核细胞(PBMC),采用实时荧光定量PCR反应,检测线粒体NADH脱氢酶亚基1(ND1)基因的拷贝数,并以核基因组的β-actin作为内参基因,比较25例肝癌患者与30例健康人外周血单个核细胞中mt DNA拷贝数的差异。流式细胞术检测单个核细胞活性氧(ROS)含量的变化。生化检测法检测血浆中总抗氧化能力(T-AOC)的变化。结果:肝癌组外周血单个核细胞ND1基因拷贝数是健康对照组的73%,表明肝癌患者外周血单个核细胞mt DNA拷贝数明显下降。肝癌组单个核细胞活性氧含量的平均荧光强度为(417.82±110.62),健康对照组为(301.82±75.54),肝癌组单个核细胞活性氧含量显著高于健康对照组(P0.01)。肝癌组血浆总抗氧化能力(单位/毫升血浆)吸光度为(1.30±0.85),健康对照组为(3.20±1.62),肝癌组血浆总抗氧化能力显著低于健康对照组(P0.01)。结论:肝癌患者的外周血单个核细胞线粒体DNA拷贝数减少可能与机体抗氧化水平下降有关。     

阻断泛素-蛋白酶体通路对人原代白血病细胞的作用

阻断泛素-蛋白酶体通路对不同类型细胞具有完全不同的结果, 但未见对原代白血病细胞作用的报道. 观察了阻断上述通路对8例白血病患者和10例正常人骨髓单个核细胞(MNC)的作用. 结果表明, 不同个体原代白血病细胞对阻断此通路的反应敏感性存在明显差异, 其中3例细胞极为敏感, 24 h以内90%细胞被迅速诱发凋亡, 而正常人骨髓MNC对阻断泛素蛋白酶体通路反应不敏感, 未观察到凋亡现象发生. 进一步的免疫印迹实验发现, 对上述通路敏感的原代白血病细胞Bcl-2蛋白表达量较高, 而且在凋亡过程中发生了特异位点的酶解;对上述通路不敏感的细胞(包括正常人骨髓MNC)Bcl-2蛋白低表达, 或Bcl-2高表达但未能检测到其特异性酶解现象. 结合其他实验结果, 提示细胞中Bcl-2蛋白是否发生特异位点酶解与细胞对阻断上述通路的敏感性之间具有相关性, 为进一步研究不同种类细胞对阻断泛素-蛋白酶体通路敏感性差异的机制提供了线索.     

转录因子Sp1上调前列腺癌细胞中CD59的表达

目的:构建针对Sp1基因siRNA真核表达载体,转染前列腺癌细胞PC-3,研究反式作用因子Sp1时CD59表达的影响.方法:应用siRNA表达载体介导的RNAi技术,构建含特异性sp1基因的重组载体pSUPER-siSp1,脂质体法转染前列腺癌细胞,G418筛选建立稳定表达转染基因的细胞株,Western blotting检测转染细胞中sp1和CD59基因的表达,MTT和染料释放试验判断CD59基因抑制后对补体溶破的抵抗作用.结果:成功构建了Sp1基因siRNA真核表达载体,转染PC-3细胞可表达荧光蛋白,稳定转染的Pc-3细胞Sp1及CD59基因蛋白水平降低,MTT和染料释放实验表明CD59基因受抑制后对补体溶破的抵抗作用降低.结论:siRNA-Sp1重组载体有效地抑制了CD59的表达,降低CD59的抗补体活性,结果证明反式作用因子Sp1是CD59表达调控中重要的转录因子,为探讨CD59在肿瘤细胞中高表达的研究奠定了基础.     

多表位肽抗原诱导特异性CTL抗慢性髓性白血病细胞的体外实验研究

目的：在应用基因工程技术人工表达获得多表位BCR-ABL融合蛋白的基础上,对该融合抗原在体外诱导对自血病细胞的特异性杀伤效应进行检测,探索慢性髓性自血病（CML）免疫治疗的新途径。方法：从外周血单个核细胞培养树突细胞（DC）,以BCR-ABL融合抗原脉冲刺激DC,诱导特异性细胞毒T淋巴细胞（CTL）产生;MTT法检测CTL对白血病靶细胞的特异性杀伤活性。结果：以BCR-ABL融合抗原刺激产生的CTL能特异性抑制b3a2＋的靶细胞生长,包括K562细胞（P〈0．01）和HIJA-A2＋／b3a2＋的CML原代细胞（P〈0．05）,而对HIA-A2-或b2a2＋靶细胞无明显抑制作用。结论：设计表达的多表位BCR-ABL融合抗原能在体外诱导特异性抗CML免疫反应,抑制b3a2＋自血病细胞生长,有望为进一步的体内实验奠定基础。     

Osteolytic lesion in chronic myelogenous leukaemia

Destructive bone lesion of the femur was observed in one patient from a series of 103 patients with CML. Numerous myeloblasts were seen on touch preparations of the fresh surgical specimen obtained by open biopsy of the affected area. Bone marrow and peripheral blood differential count were compatible with chronic phase of CML at this time. 5 months later blastic crisis developed. Local radiotherapy produced effective palliation of pain but did not prevent blastic transformation of CML. The treatment of blastic crisis was unsuccessful and patient died 3 years after diagnosis of CML, 6 months after the first clinical evidence of bone infiltration.     

Gene expression profile of human bone marrow stromal cells determined by restriction fragment differential display analysis

Using an in vitro osteogenic culture system, we carried out a restriction fragment differential display (RFDD-PCR) to identify genes expressed by these cells in their undifferentiated stage and not expressed, or expressed at a lower level, in a closely related but distinct cell type: bone marrow stromal cells (BMSC)-derived osteoblasts (BDO). Forty-seven candidate regulated genes, selected by RFDD, were analyzed by RT-PCR analysis in three cell clones and in primary cultures from seven different donors. A subset of three genes were confirmed as upregulated in BMSC relative to BDO in every primary culture and cloned population examined: betaIG-h3, IGFbp3, and LOXL2. Their differential expression was confirmed by Northern analysis and the corresponding proteins were detected by immunolocalization in BMSC.     

Prognostic significance of the histomorphometric features of bone marrow trephine biopsies in patients with chronic myeloid leukemia

OBJECTIVE: To study the correlation of histomorphometric data of bone marrow trephine biopsies at the time of initial diagnosis in chronic myeloid leukemia (CML) patients with the patient prognosis. STUDY DESIGN: A total of 40 CML patients were divided equally in group I (developed accelerated phase or blast crisis within 18 months of initial diagnosis of chronic phase of CML) and group II (developed accelerated phase or blast crisis > 30 months after initial diagnosis of chronic phase of CML). The clinical, hematologic and histomorphometric data were compared in the 2 groups of CML patients. RESULTS: The percentage of bone marrow promyelocytes was significantly increased in group I. On morphometry, the number of blasts per square millimeter, the area of reticulin fibers per square millimeter and the percentage area occupied by reticulin fibers were statistically significant. CONCLUSION: There seems to be grounds for hope for predicting prognosis of CML patients at initial diagnosis based on histomorphometric findings. The percentage area of reticulin fibers and the number of blasts per square millimeter are important prognostic predictors in histomorphometry data.     

Label-free MS(E) proteomic analysis of chronic myeloid leukemia bone marrow plasma: disclosing new insights from therapy resistance

Chronic myeloid leukemia (CML) is a pluripotent hematopoietic disorder that is currently considered incurable. The tyrosine kinase product of the Philadelphia chromosome, P210 BCR-ABL, provided a pathogenetic explanation for the initiation of the CML chronic phase and is the molecular therapeutic target for the disease. Imatinib mesylate, an orally available BCR-ABL kinase inhibitor, can induce haematologic and cytogenetic remission of CML. However, imatinib resistance occurs frequently, resulting in relapse. New treatment strategies are focusing on resistant CML stem cells and the bone marrow stroma. The identification of novel pathways and mechanisms in the bone marrow microenvironment could significantly contribute to the development of such strategies. In this work, we used a high-resolution label-free MS(E) proteomic approach to identify differential protein expression in the CML bone marrow plasma of responsive and resistant patients. Oxidative lipid metabolism and regulation of the switch from canonical to noncanonical WNT signaling may contribute to CML resistance in the bone marrow compartment.     

错配修复基因hMSH2与慢性粒细胞白血病相关性研究

目的:通过对慢性粒细胞白血病(chronic myeloid leukemia,CML)患者骨髓细胞中错配修复基因(mismatch repair,MMR)h MSH2的表达水平及其调控机制的分析,探讨h MSH2与慢性粒细胞白血病疾病进展的联系。方法:用实时定量PCR方法检测10例对照,27例CML患者(包括慢性期9例,进展期8例,急变期10例)骨髓中4个MMR基因(h MSH2、h MSH6、h MLHl、h PMS2)m RNA的表达;用MSP方法检测MMR基因启动子区甲基化水平;用Western blot方法观察MMR蛋白水平在各组之间的差异。结果:与正常对照比较,CML患者的h MSH2的表达明显降低(P0.05),其表达随疾病恶化而下降,依次为急变期加速期慢性期,而h MLHl、h PMS2、h MSH6的表达却未见异常;27例CML患者中出现3例h MSH2启动子区高甲基化。结论:CML患者的h MSH2表达水平比正常人显著降低,且随着疾病恶化其表达水平逐下降,提示h MSH2可能与CML疾病进展相关。     

Regional mapping of two human immunoglobulin V lambda genes and analysis of the V lambda locus in chronic myeloid leukaemia.

The human immunoglobulin V lambda locus has been studied in relation to chromosomal translocations involving chromosome 22. DNA probes for two V lambda genes which belong to different subgroups and do not cross hybridize, were used to show that both V lambda genes are located on the Philadelphia chromosome in chronic myeloid leukaemia (CML). Both genes map in band 22q11 to a region that is bounded on the distal side by the breakpoints for CML 9:22 translocations and on the proximal side by the breakpoint for an X:22 translocation. We have found no evidence for rearrangements or amplification of either V lambda gene in CML, in either the chronic or acute phases of the disease. In K562 cells which are derived from the pleural effusion of a patient with Ph1-positive CML, there appears to be no rearrangement of the V lambda genes, but they are both amplified about four times. We have estimated that the minimum size for the amplification unit in K562 cells is 186 kb.     

A histomorphometric analysis of trephine biopsies of bone marrow from 65 patients with chronic myeloid leukemia. Classification of patients into subgroups with different survival patterns

A histomorphometric (planimetric) study was performed on trephine biopsies of the bone marrow taken at presentation from 65 patients (31 males and 34 females, with a median age of 48 years) with chronic myeloid leukemia (CML). Specimens from 20 patients (9 males and 11 females, with a median age of 53 years) without any hematologic disorders served as controls. Of the various histologic variables tested, only the counts of neutrophilic granulocytes per 1 sq mm, the ratio of granulocytopoiesis to megakaryopoiesis and the density of reticulin (argyrophilic) fibers revealed a significant correlation with the prognosis. The CML patients were separated into two groups with different survival patterns. Group I (34 patients with a median survival of 24 months) mostly contained cases with the so-called "megakaryocytic subtype" of CML, which is accompanied by variable degrees of fibrosis; group II (31 patients with a median survival of 36 months) mainly contained cases with the "granulocytic subtype," which is not accompanied by myelofibrosis. Among the morphometric parameters, a positive correlation existed between the megakaryocyte count and the reticulin fiber density, which underlines the important role of that cell lineage in fibrillogenesis. There were multiple interrelationships between the histomorphometric variables and the laboratory data. Consequently, multivariate regression methods (using Cox's proportional hazards model) were applied to assess the relative predictive value of the patient characteristics for survival. The derived prognostic model divided the patients into two risk groups, with median survivals of 14 and 41 months, respectively. In order of their entry into the regression model, these variables were percentage of neutrophils in the differential blood count, amount of granulopoiesis, liver size, percentage of peripheral myeloblasts and density of reticulin fibers in the bone marrow. In comparing the two patient groups, based on bone marrow histomorphometric parameters, this model revealed that two of those factors (amount of granulopoiesis and density of reticulin fibers) had a significant correlation with the prognosis.