Mixing of supersaturated assemblages and the precipitous loss of species

Mechanisms influencing species richness are many. Recent theoretical research revealed additional mechanisms that involved neutral and lumpy coexistence and alternating assemblage states. These mechanisms can lead to conditions where the number of coexisting species is greater than the number of limiting resources, that is, species supersaturation. Our research focused on the role of disturbances (migration and pulsed through-flows) in supersaturated plankton systems. Our simulations employed 30 different supersaturated assemblages generated by using various ecological principals. Our findings indicated that immigration rates as low as 0.1% of total biomass per day generally led to regional homogenization of species and dramatic extinction events, with assemblages characteristic of lumpy coexistence being more resilient than those characteristic of neutral coexistence or alternating states. Generally, pulsed through-flows tended to offset, to some extent, the negative effects of migration. The precipitous loss of species with the onset of migration is observed in other systems as well, for example, cichlid fish communities of East Africa rift lakes and songbird assemblages from Indian Ocean islands. While many explanations have been offered to explain postimmigration extinctions in species-rich systems, another explanation might be that the assemblages in these systems are in a fragile state of supersaturated coexistence.     

Community dynamics: what happens when we rerun the tape?

The role of historical events, such as disturbances, in producing alternative developmental outcomes in forest structure has long been debated. Diversity in the assemblages of coexisting species is one measure of alternative outcomes of succession. The intermediate disturbance hypothesis proposes that a moderate disturbance level produces the highest levels of species diversity. Here, we use an agent-based model of forest development under a gradient of lightning strike frequency to analyse long-term dynamics of species coexistence in a multi-species forest. The configurations of species that result from disturbance dynamics reflect the interactions between life-history characteristics of the species and disturbance characteristics. Model results suggest that low levels of disturbance lead to highly ordered landscapes which exclude fire and are captured by late successional species. High levels of disturbance lead to oscillation between domination by early successional species and large disturbances. At intermediate levels of disturbance, the forest displays the broadest array of developmental pathways, highest entropy as measured by Shannon's index of diversity, and critical slowing near steady states. Long transients at intermediate regimes may reflect the working out of closely balanced constraints of competition between species with varying strategic adaptations to disturbance. Intermediate disturbance levels also result in the greatest number of alternative diversity configurations as outcomes of succession, reflecting an unpredictable and nonequilibrium forest dynamic.     

Does disturbance affect bud bank size and belowground structures diversity in Brazilian subtropical grasslands?

Brazilian Campos grasslands are ecosystems under high frequency of disturbance by grazing and fires. Absence of such disturbances may lead to shrub encroachment and loss of plant diversity. Vegetation regeneration after disturbance in these grasslands occurs mostly by resprouting from belowground structures. We analyzed the importance of bud bank and belowground bud bearing organs in Campos grasslands. We hypothesize that the longer the intervals between disturbances are, the smaller the size of the bud bank is. Additionally, diversity and frequency of belowground organs should also decrease in areas without disturbance for many years. We sampled 20 soil cores from areas under different types of disturbance: grazed, exclusion from disturbance for two, six, 15 and 30 years. Belowground biomass was sorted for different growth forms and types of bud bearing organs. We found a decrease in bud bank size with longer disturbance intervals. Forbs showed the most drastic decrease in bud bank size in the absence of disturbance, which indicates that they are very sensitive to changes in disturbance regimes. Xylopodia (woody gemmiferous belowground organs with hypocotyl-root origin) were typical for areas under influence of recurrent fires. The diversity of belowground bud bearing structures decreased in the absence of disturbance. Longer intervals between disturbance events, resulting in decrease of bud bank size and heterogeneity of belowground organs may lead to the decline and even disappearance of species that relay on resprouting from the bud bank upon disturbance.     

Species coexistence under resource competition with intraspecific and interspecific direct competition in a chemostat

Competition theory has developed separately for direct competition and for exploitative competition. However, the combined effects of the two types of competition on species coexistence remain unclear. To examine how intraspecific and interspecific direct competition contributes to the coexistence of species competing for a single resource, we constructed a chemostat-type resource competition model. With general functions for intraspecific and interspecific direct competition, we derived necessary and sufficient conditions (except for a critical case that rarely occurs in a biological sense) that determine the number of stably coexisting species. From these conditions, we found that the number of coexisting species is determined just by the invasibility of each species into subcommunities with a smaller number of species. In addition, using a combination of rigorous mathematical theory and a simple graphical method, we can demonstrate how the stronger intraspecific direct competition facilitates species invasion, leading to a larger number of coexisting species.     

Changes in woody vegetation abundance and diversity after natural disturbances causing different levels of mortality

Questions: How does woody vegetation abundance and diversity differ after natural disturbances causing different levels of mortality? Location: Abies balsamea–Betula papyrifera boreal mixed‐wood stands of southeast Quebec, Canada. Methods: Woody vegetation abundance and diversity were quantified and compared among three disturbance‐caused mortality classes, canopy gap, moderate‐severity disturbances, and catastrophic fire, using redundancy analysis, a constrained linear ordination technique, and diversity indices. Results: Substantial changes in canopy tree species abundance and diversity only occurred after catastrophic fire. Shade‐tolerant, late‐successional conifer species remained dominant after canopy gap and moderate‐severity disturbances, whereas shade‐intolerant, early‐successional colonizers dominated canopy tree regeneration after catastrophic fire. Density and diversity of mid‐tolerant and shade‐intolerant understory tree and shrub species increased as the impact of disturbance increased. Highest species richness estimates were observed after catastrophic fire, with several species establishing exclusively under these conditions. Relative abundance of canopy tree regeneration was most similar after canopy gap and moderate‐severity disturbances. For the sub‐canopy tree and shrub community, relative species abundances were most similar after moderate‐severity disturbances and catastrophic fire. Vegetation responses to moderate‐severity disturbances thus had commonalities with both extremes of the disturbance‐caused mortality gradient, but for different regeneration layers. Conclusions: Current spatio‐temporal parameters of natural disturbances causing varying degrees of mortality promote the development of a complex, multi‐cohort forest condition throughout the landscape. The projected increase in time intervals between catastrophic fires may lead to reduced diversity within the system.     

The use of multi-parameter flow cytometry to study the impact of limiting substrate, agitation intensity, and dilution rate on cell aggregation during Bacillus licheniformis CCMI 1034 aerobic continuous culture fermentations

The main objective of this work was to establish those factors either physical (power input) or chemical (limiting substrate or dilution rate) that enhance cell aggregation (biofilm or floc formation) and cell physiological state during aerobic continuous cultures of Bacillus licheniformis. Glucose-limited steady-state continuous cultures growing at a dilution rate between 0.64 and 0.87/h and 1,000 rpm (mean specific energy dissipation rate (epsilonT) = 6.5 W/kg), led to the formation of a thin biofilm on the vessel wall characterized by the presence of a high proportion of healthy cells in the broth (after aggregate disruption by sonication) defined as having intact polarized cytoplasmic membranes. An increased epsilonT (from 6.5 W/kg to 38 W/kg) was found to hinder cell aggregation under carbon limitation. The carbon recovery calculated from glucose indicated that additional extracellular polymer was being produced at dilution rates >0.87/h. B. licheniformis growth under nitrogen limitation led to floc formation which increased in size with dilution rate. Counter-intuitively the flocs became more substantial with an increase in epsilonT from 6.5 W/kg to 38 W/kg under nitrogen limitation. Indeed the best culture conditions for enhanced metabolically active cell aggregate formation was under nitrogen limitation at epsilonT = 6.5 W/kg (leading to floc formation), and under carbon limitation at a dilution rate of between 0.64 and 0.87/h, at epsilonT = 6.5 W/kg (leading to vessel wall biofilm formation). This information could be used to optimize culture conditions for improved cell aggregation and hence biomass separation, during thermophilic aerobic bioremediation processes.     

Kinetic analysis of hybridoma growth and monoclonal antibody production in semicontinuous culture

Hybridoma I.13.17 was grown in semicontinuous culture in an attempt to investigate the steady-state concentrations of key components of monoclonal antibody (MAb) synthesis (e.g., intracellular MAb, IgG messenger RNAs) at different dilution rates between 0.008 and 0.055 h(-1). There was a general trend of increasing steady-state levels of total cytoplasmic RNA, total cell-associated MAb or cytoplasmic MAb, DNA synthesis rate, cellular metabolic activity, heavy (H-) and light (L-) chain IgG mRNAs with the increase in dilution rates. Increase in the half-lives of H- and L-chain mRNAs with increase in dilution rates may be sufficient to account for their increasing levels found under the same conditions. The specific growth rate was profoundly affected by the dilution rate, particularly near the lower end of the dilution rate range. Linear relationships were observed between the steady-state amounts of total cell-associated MAb and the relative levels of H- and L-chain mRNAs. Material balances on intracellular MAb demonstrated an increasing percentage of antibody not released into the growth medium (e.g., stored within the cell or anchored to the cell membrane) with increasing dilution rate. The MAb production rate per cell decreased significantly with the increase in dilution rates. No correlation was found between the relative levels of H- or L-chain mRNAs and the specific MAb production rate. Possible implications of rate-limiting steps in MAb synthesis and secretion are discussed.     

Application of the lognormal equation to assess phytoplankton community structural changes induced by marine eutrophication

A methodological approach was developed for the quantification of the structural changes of phytoplankton communities induced by marine eutrophication. The lognormal equation assigning species abundance to doubling intervals (octaves) of individuals formed the basis of the proposed methodology and the field validation process was based on phytoplankton enumeration and classification data characteristic of eutrophic, mesotrophic and oligotrophic waters. Five octave sets with different sizes were tested for goodness of fit against field data and the set with the smallest size of doubling intervals was selected for further consideration. The application of the lognormal equation was evaluated statistically with field data and it was considered satisfactory at the 87% level. The changes in the shape of the lognormal equation induced by eutrophication were expressed by three characteristic parameters of the equation: the number of the modal octave, the number of species in the modal octave, and the shaping factor. Significant differences were observed for the three parameters among eutrophic, mesotrophic, and oligotrophic waters; the number of the modal octave was high in eutrophic and mesotrophic waters, the number of species in the modal octave has shown a trend of low values under mesotrophic conditions and the shaping factor has shown a considerable increase from eutrophic to oligotrophic waters. Handling editor: L. Naselli-Flores     

Changes of beta-adrenoceptors in the aortic muscle cells of spontaneously hypertensive rats

The characteristics of [125I]monoiodocyanopindolol (ICYP) binding to beta-adrenoceptors of cultured aortic smooth muscle cells derived from 4-week-old spontaneously hypertensive rats (SHR) and the Wistar-Kyoto normotensive rats (WKY) were examined. During optimization of the binding assays, we found that the specific binding of ICYP by intact cells was masked by a high level of nonspecific ICYP accumulation in intact cells presumably owing to the lipophilic nature of ICYP. Optimal specific ICYP binding requires that the cells be gently lysed with hypotonic dilution followed by a freeze-and-thaw cycle. Under most experimental conditions tested, the total number of ICYP binding sites in WKY aortic muscle cells was considerably and consistently smaller than that in SHR cells. There was no difference in the Kd values for ICYP binding to SHR and WKY cells. However, when ICYP binding was carried out using crude membrane fractions with well-defined plasma membrane content isolated from aortic muscle strips of adult rats, we found no difference in the number of beta-adrenoceptor sites between SHR and WKY. Morphological evidence indicated that cultured SHR aortic muscle cells contained a greater proportion of larger cells with multinuclear features. These results suggest that an increase in the number of beta-adrenoceptor density per cell in SHR may be associated with cellular hypertrophy of aortic smooth muscle cells. We conclude that under cultured conditions, a higher incidence of polyploid smooth muscle cells in the SHR as compared with WKY was expressed earlier than under in vivo conditions. Therefore, the interpretation of results obtained from cultured cell studies in relation to under in vivo conditions should be exercised with caution.     

Assessing the persistence capacity of communities facing natural disturbances on the basis of species response traits

Adequately assessing the ecosystem resilience and resistance is a challenging and essential question in the current context of widespread environmental change. Here we suggest the use of a quantitative measure we call Persistence Index (PI) to assess the capacity of communities to maintain their functions and services after disturbances. First, we present the formulation of PI that is based on the diversity, abundance, and redundancy of disturbance- and taxon-specific response traits. Then, we use simulated data sets to study the effects of species richness and the number and frequency of traits on PI values. Finally, we illustrate our approach by assessing the persistence capacity of forest communities in Peninsular Spain and the Balearic Islands in response to fire, drought and windstorm events.The Persistence Index was found to be relatively independent on the number of considered traits, but variable according to the frequency of traits in the community. In the evaluation made with national forest inventory data, PI was found to vary within and among different forest types, being particularly high in stands dominated by non-native species (e.g. Eucalyptus sp.) or in mixed-stands composed by evergreen and deciduous broadleaf species. We also found PI values to increase with the number of species present in the stand, although this relationship saturated due to overlap in species response traits.The presented index is complementary to other approaches developed to study the functional structure of communities through the distribution of species in a functional space. It can be applied to a broad spectrum of communities subjected to different types of stressors, making it a useful tool to guide ecosystem management decisions in a context of changing climate and uncertain disturbance regimes.     

三峡库区移民区和淹没区植物群落物种多样性的空间分布格局

为研究三峡库区移民安置区和淹没区植物群落物种多样性的空间分布格局, 在从坝区到重庆的长江南北两岸各设置了7条样带, 从海拔70 m到610 m每上升50 m设置一个样方, 共调查了129个样方。采用物种数和基于盖度的Shannon-Wiener指数作为物种多样性指标, 分析了不同海拔、样带、坡向与南北岸位置的植物群落物种多样性的空间分布特点; 采用DCCA 排序阐明物种多样性与环境因子的相互关系, 并进一步分析了造成上述空间分布格局的环境因子。结果表明: 南岸的物种多样性高于北岸; 物种多样性随海拔升高而增加, 但趋势不显著; 从坝区到重庆物种多样性变化没有明显的规律性, 在坝区和万州最高, 重庆和巫山最低。DCCA排序结果表明, 影响物种多样性变化的外在环境因子最主要的是南北岸位置, 其次为海拔; 而增加物种多样性的主导生境因子是群落乔木层的盖度, 灌木层的盖度则对物种多样性具有抑制作用, 说明群落自身的结构特点决定着物种多样性。总之, 研究区域由水热条件组合影响的物种多样性空间分布格局的规律性由于人为活动的异质性干扰发生了改变, 而干扰后群落自身的结构特点, 特别是群落冠层的盖度, 决定着群落自身的物种多样性。     

The relationship between temperature,competition and the potential for colonization of a subtropical pond by Daphnia magna

The role that temperature plays in excluding large daphnid species from subtropical and tropical ponds, and competitive relationships between Daphnia laevis and Daphnia magna, are explored. D. magna, a large temperate species is probably not excluded from subtropical or tropical systems by elevated temperatures. However, D. magna was a poorer competitor, under a restricted set of laboratory conditions, than D. laevis, the only pond dwelling daphnid in subtropical Florida. Competition is proposed as one mechanism that may limit the number of daphnid species in subtropical and tropical ponds and lakes. Reduced environmental fluctuations in subtropical and tropical systems (compared with temperate systems) may allow zooplankton populations to reach an environmental carrying capacity where competition limits the number of similar, coexisting species in a habitat.     

The impact of altered precipitation variability on annual weed species

? Premise of the study: Climate change models predict increasing variability in precipitation across the globe, with an increase in the incidence of large precipitation events but decreasing overall event frequency. Research with annual species in arid and semiarid ecosystems has demonstrated that precipitation variability can influence plant community dynamics; however, less is known about the impact of precipitation variability in less water-limited ecosystems, including economically important agricultural systems. ? Methods: We conducted three greenhouse experiments to determine how variation in total precipitation and the interval between precipitation events affected emergence and growth of two common annual midwestern weed species, Chenopodium album (Chenopodiaceae) and Setaria faberi (Poaceae). ? Key results: Both species responded to precipitation variability; however, the effect depended on life stage and precipitation amount, indicating that responses are highly context-dependent. Emergence of both species increased with longer intervals between precipitation events at low total precipitation, but species' responses varied under typical precipitation amounts. Individual seedling biomass of both species depended on interactions between total water and intervals, but species' responses differed; Setaria faberi biomass was reduced with longer intervals, but Chenopodium album had either a positive or no response. ? Conclusions: Our results suggest that changes in precipitation variability likely will affect the composition and relative abundance of agriculturally important weeds. These results are important for understanding how changes in the temporal variability of precipitation due to global climate changes could impact plants in non-arid communities.     

Forest response to increasing typhoon activity on the Korean peninsula: evidence from oak tree‐rings

The globally observed trend of changing intensity of tropical cyclones over the past few decades emphasizes the need for a better understanding of the effects of such disturbance events in natural and inhabited areas. On the Korean Peninsula, typhoon intensity has increased over the past 100 years as evidenced by instrumental data recorded from 1904 until present. We examined how the increase in three weather characteristics (maximum hourly and daily precipitation, and maximum wind speed) during the typhoon activity affected old‐growth oak forests. Quercus mongolica is a dominant species in the Korean mountains and the growth releases from 220 individuals from three sites along a latitudinal gradient (33–38°N) of decreasing typhoon activity were studied. Growth releases indicate tree‐stand disturbance and improved light conditions for surviving trees. The trends in release events corresponded to spatiotemporal gradients in maximum wind speed and precipitation. A high positive correlation was found between the maximum values of typhoon characteristics and the proportion of trees showing release. A higher proportion of disturbed trees was found in the middle and southern parts of the Korean peninsula where typhoons are most intense. This shows that the releases are associated with typhoons and also indicates the differential impact of typhoons on the forests. Finally, we present a record of the changing proportion of trees showing release based on tree‐rings for the period 1770–1979. The reconstruction revealed no trend during the period 1770–1879, while the rate of forest disturbances increased rapidly from 1880 to 1979. Our results suggest that if typhoon intensity rises, as is projected by some climatic models, the number of forest disturbance events will increase thus altering the disturbance regime and ecosystem processes.     

Variation in the population structure between a natural and a human‐modified forest for a pioneer tropical tree species not restricted to large gaps

The distribution of tree species in tropical forests is generally related to the occurrence of disturbances and shifts in the local environmental conditions such as light, temperature, and biotic factors. Thus, the distribution of pioneer tree species is expected to vary according to the gap characteristics and with human disturbances. We asked whether there was variation in the distribution of a pioneer species under different environmental conditions generated by natural disturbances, and between two forests with contrasting levels of human disturbance. To answer this question, we studied the distribution patterns and population persistence of the pioneer tree species Croton floribundus in the size and age gap range of a primary Brazilian forest. Additionally, we compared the plant density of two size‐classes between a primary and an early successional human‐disturbed forest. Croton floribundus was found to be widespread and equally distributed along the gap‐size gradient in the primary forest. Overall density did not vary with gap size or age (F‐ratio = 0.062, P = 0.941), and while juveniles were found to have a higher density in the early successional forest (P = 0.021), tree density was found to be similar between forests (P = 0.058). Our results indicate that the population structure of a pioneer tree species with long life span and a broad gap‐size niche preference varied between natural and human‐disturbed forests, but not with the level of natural disturbance. We believe this can be explained by the extreme environmental changes that occur after human disturbance. The ecological processes that affect the distribution of pioneer species in natural and human‐modified forests may be similar, but our results suggest they act differently under the contrasting environmental conditions generated by natural and human disturbances.     

Associations between emergence of follicular waves and fluctuations in FSH concentrations during the estrous cycle in ewes

Folliculogenesis was studied daily in 16 interovulatory intervals in 5 Polypay ewes from mid February through April using transrectal ultrasonic imaging. The 3-mm follicles attaining > or = 5 mm on Days--1 (ovulation=Day 0) to 11 showed significant peak numbers on Days 0, 5 and 10. The number of 3- and 4-mm follicles that did not reach > 4 mm was not significant, indicating that these follicles did not manifest a wave pattern. A follicular wave was defined as one or more follicles growing to > or = 5 mm; the day the follicles were 3 mm was the day of wave emergence, and the first wave after ovulation was Wave 1. Waves 1, 2 and 3 emerged on Days -1 to 2,4 to 7 and 8 to 10, respectively. Four interovulatory intervals in April were short (9 to 14 d), indicating the end of the ovulatory season. In the remaining 12 intervals, the ovulatory wave was Wave 3 in one interval, Wave 4 in 8 intervals, and Wave 5 or 6 in 3 intervals. The ovulatory wave followed the rhythmic pattern of Waves 1 to 3 by emerging on Days 11 to 14 in 50% of the intervals. In the remaining intervals, either the ovulatory wave was Wave 4 but did not emerge until Day 16 or other waves intervened between Wave 3 and the ovulatory wave. The longest intervals (22, 24 and 24 d) had >4 waves. Based on a cycle-detection program, peak values of FSH fluctuations were temporally associated with the emergence of waves as indicated by the following: 1) tendency (P < 0.08) for an increase in FSH concentrations between 3 and 2 days before emergence of a wave; 2) close agreement between mean number of waves per interval (mean +/- SEM, 4.1 +/- 0.3) and mean number of identified FSH fluctuations (4.5 +/- 0.3); 3) close agreement in length of interwave intervals (4.0 +/- 0.3) and interpeak (FSH) intervals (3.6 +/- 0.2); 4) positive correlation (r(2)=0.8) for number of the 2 events (follicular waves and FSH fluctuations) within intervals; and 5) a closer (P < 0.01) temporal relationship between the 2 events than would have been expected if the events were independent. The results support a relationship between transient increases in FSH concentrations and emergence of follicular waves throughout the interovulatory interval in Polypay ewes, with the 2 events occurring approximately every 4 d.     

不同压力条件下油藏内源细菌群落激活过程中变性梯度凝胶电泳分析?

摘要：【目的】了解常压（1 MPa）和高压（10 MPa）条件下内源细菌激活中的细菌群落和结构的变化。【方法】利用胜利油田沾3×24井产出液水样,在常压和高压下进行富集培养后,定时取样,样品用变性梯度凝胶电泳（denature gradient gel electrophoresis,DGGE）技术分析。【结果】通过对内源微生物激活前后DGGE条带的数量和亮度变化分析表明,油藏环境中的细菌在种类和数量上并不丰富,激活剂的加入改变了菌群原有的贫营养环境,从而使一些因营养缺乏生长受抑制细菌得以大量繁殖,菌群结     

Influence of chronic exposure to low doses of space ionizing radiation on the character of formation of microbial assemblage in the habitat of orbital station

Statistically valid relations between radiation conditions in compartments of MIR station and the micromicete population (CFU number) on the surface of the equipment and the interior have been established. It was found that in conditions of a chronic exposure to space radiation the number of CFU increased in one thousand and more times with increasing of absorbed dose rate from 200 up to 1000 microGy/day. The results of land-based model experiments confirmed morphological changes in the "flight" strains of funguses under exposure to low doses of gamma (100-800 microGy/day) and neutron (0.2-2 neutron/cm2.s) radiation. It was found that the morphological changes in the control (museum) cultures of funguses of the same species, which were expressed in the weak increase of vegetative mycelium, were detected only after repeated gamma- and gamma + neutron irradiation.     

Temporal Changes in Tree Species and Trait Composition in a Cyclone-prone Pacific Dipterocarp Forest

Our understanding of the effects of tropical cyclones on species composition and dynamics of forest communities is mainly derived from studies that have considered single cyclonic events. Here we examined changes in the tree species and functional trait composition in an 8-ha Dipterocarp forest at Palanan in the northeastern Philippines that is subject to a high frequency of cyclonic disturbance (1–4 cyclones annually). The plot has been censused four times over a 16-year interval allowing us to consider the medium-term forest dynamics in response to repeated cyclones. We hypothesized that as the forest community in Palanan has been selected under frequent disturbance by cyclones, it should show little functional change across the census intervals. We analyzed changes in demography, species composition, and community-weighted functional traits (specific leaf area, leaf area, wood density, and specific growth rate) across the censuses and compared these against cyclone intensities during the census intervals. Demographic changes across census years suggest that the community responded to cyclonic disturbances through substantial turnover in the small- and medium-size individuals, and that there has been an increase in plot-level stem density and basal area across the measured period. Trait compositional changes from 1994 to 2010 were mostly small, but indicate a shift towards species with larger leaves and faster growth rates—traits that are associated with fast recovery after disturbance. These changes all coincide with a large intense cyclone between the second and third censuses, suggesting that cyclone strength, more than cyclone frequency, affects this forest.