Determination of formation constants for complexes of very high stability: log β4 for the [Pd(CN)4] ion

The formation constant, log β₄ = 62.3 for [Pd(CN)₄]²⁻ is reported at 25 °C in 0.1 M NaClO₄. This value of log β₄ was determined using a competition reaction, monitored using UV-Vis spectroscopy and ¹H NMR. The competition reaction used was with the tetraamine ligand 2,3,2-tet(1,4,8,11-tetraazaundecane), for which log K₁ = 47.8 at 25 °C in 0.1 M NaClO₄ was determined by competition with thiocyanate, as described by earlier workers (Q.Y. Yan, G. Anderegg, Inorg. Chim. Acta 105 (1985) 121.). Also reported is a value of log β₄ for the [Pd(SCN)₄]²⁻ ion of 27.2 in 0.1 M NaClO₄, determined by competition with 2,2,2-tet. Measurement of log K₁ for cyclam with Pd(II) was attempted using a competition reaction with cyanide, combined with the very high value of log β₄ for [Pd(CN)₄]²⁻ measured here. It appeared that the equilibrium being followed was actually [Pd(cyclam)]²⁺ + 2CN⁻ ? [Pd(cyclam)(CN)₂], for which a constant of log K = 5.2 was obtained. ¹H NMR and IR studies suggested that the complex [Pd(cyclam)(CN)₂] was prone to oxidation to Pd(IV), followed by disproportionation to [Pd(cyclam)]²⁺ and, presumably, (CN)₂. The very high value of log β₄ for [Pd(CN)₄]²⁻ found here appears to be the highest formation constant known for any metal ion.     

Spectrophotometric determination of formation constants for the Cu-ethylenediamine-halogen (chloride and bromide) system and their catalytic effect on the oxidative coupling of 2,6-di-tert-butyl-phenol

In order to explain the mechanism of the dimerization of 2,6-di-tert-butyl-phenol when catalyzed by the copper-ethylenediamine complexes, a spectrophotometric study of the speciation of copper(II) complexes in methanol of Cu(II), ethylendiamine and Cl⁻ or Br⁻ was carried out at 303 K. The formation constants obtained for the copper chloride system are: log β₁₀₁ = 2.90 ± 0.03, log β₁₀₂ = 6.39 ± 0.03 and log β₁₀₃ = 8.62 ± 0.04, for the copper bromide system are log β₁₀₁ = 3.01 ± 0.10, log β₁₀₂ = 5.50 ± 0.08, for the copper-ethylendiamine complexes are log β₁₁₀ = 6.13 ± 0.05 and log β₁₂₀ = 10.54 ± 0.08, and for the ternary copper-ethylenediamine chloride or bromide systems are log β₁₁₁ = 10.21 ± 0.03 and log β₁₁₁ = 10.07 ± 0.03, respectively. Knowing the speciation of the copper-ethylenediamine-halide systems, the kinetic studies can be correlated with the species in solution. Comparative studies of the oxidation reaction of 2,6-di-tert-butyl-phenol using different copper(II) complexes with chloride or bromide and ethylenediamine as catalyst are reported. Their catalytic activity in the oxidation of 2,6-di-tert-butyl-phenol was monitored in methanol solution, following the corresponding quinone formation, at 418 nm (ε = 3.95 × 10⁴ mol⁻¹ L cm⁻¹ at 303 K). The results indicate that the most active species are [Cu(en)X]⁺, where X is bromide or chloride, Both complexes have similar activity.     

Complexation study of europium(III) and curium(III) with urea in aqueous solution investigated by time-resolved laser-induced fluorescence spectroscopy

The complex formation of europium(III) and curium(III) with urea in aqueous solution has been studied at I = 0.1 M (NaClO₄), room temperature and trace metal concentrations in the pH-range of 1-8 at various ligand concentrations using time-resolved laser-fluorescence spectroscopy. While for curium(III) the luminescence maximum is red shifted upon complexation, in case of europium(III) emission wavelengths remain unaltered but a significant change in peak splitting occurs. Both heavy metals form weak complexes of the formulae ML³⁺ and MLOH²⁺ with urea. Stability constants were determined to be log β₁₁₀ = −0.12 ± 0.05 and log β_11-1 = −6.86 ± 0.15 for europium(III) and log β₁₁₀ = −0.28 ± 0.12 and log β_11-1 = −7.01 ± 0.15 for curium(III).     

Freeze-thaw stability of starches from different botanical sources: Correlation with structural features

Native starches from twenty-six botanical sources were determined for their structural features and stability against freeze-thaw treatments. Starch gels (5%, w/w) were prepared and repeatedly freeze-thawed up to five cycles by storing at −18 °C for 21 h and then at 30 °C for 3 h. Water release (syneresis) from the thawed gel after the 1st, 3rd and 5th cycle was measured gravimetrically, and evaluated in relation to apparent amylose content (AAC) and distribution of amylopectin branch chains with degree of polymerization 6-12 (APC ratio). Syneresis was not observed for starch gels of cassava, normal and waxy japonica rice up to the 1st, 3rd and 5th cycle, respectively. On the other hand, syneresis rapidly occurred for starch gels of elephant yam, new cocoyam, potato, edible canna, and water yam. Optimal multiple linear regression models were generated to predict individual effect of AAC and APC ratio on syneresis of starch gels. The prediction models illustrated the positive unit-contribution of AAC and negative unit-contribution of APC ratio to syneresis (P < 0.001).     

Thermodynamics and laser luminescence spectroscopy of binary and ternary complexation of Am, Cm and Eu with citric acid, and citric acid + EDTA at high ionic strength

The binary complexation of Am³⁺, Cm³⁺and Eu³⁺ with citrate has been studied at I = 6.60 m (NaClO₄), pcH 3.60 and in the temperatures range of 0-60 °C employing a solvent extraction technique with di-(2-ethylhexyl)phosphoric acid/heptane. Two complexes, MCit and , were formed at all temperatures. For the three metal ions, the log β₁₀₁ was between 5.9 and 6.2 and log β₁₀₂ between 10.2 and 10.6 at 25 °C. The thermodynamic parameters for the Am-Cit system have been calculated from the temperature dependence of the β₁₀₁ and β₁₀₂ values. Positive enthalpy and entropy values for the formation of both complexes are interpreted as due to the contributions from the dehydration of the metal ions exceeding the exothermic cation-anion pairing. The formation of the ternary complex M(EDTA)(Cit)⁴⁻ (M = Cm and Eu) was measured to have large stability constants (log β₁₁₁ between 20.9 and 24.4) at 25 and 60 °C. Time resolved laser luminescence spectroscopy and lifetime measurement data validated the nature of the complexes of Eu(III) formed in the presence of Cit and EDTA + Cit in 6.60 m (NaClO₄) solution.     

Discovery of a potent series of non-steroidal non α-trifluoromethyl carbinol glucocorticoid receptor agonists with reduced lipophilicity

A novel series of indazole non-steroidal glucocorticoid receptor agonist has been discovered. This series features a sulfonamide central core and meta amides which interact with the extended ligand binding domain. This series has produced some of the most potent and least lipophilic agonists of which we are aware such as 20a (NFκB pIC₅₀ 8.3 (100%), c log P 1.9). Certain analogues in this series also display evidence for modulated pharmacology.     

Plasma lecithin:cholesterol acyltransferase activity modifies the inverse relationship of C-reactive protein with HDL cholesterol in nondiabetic men

Lecithin:cholesterol acyltransferase (LCAT) is instrumental in high-density lipoprotein (HDL) maturation, but high LCAT levels do not predict low cardiovascular risk. LCAT may affect antioxidative or anti-inflammatory properties of HDL. We determined the relationship of plasma high-sensitivity C-reactive protein (CRP) with LCAT activity and evaluated whether LCAT activity modifies the decreasing effect of HDL cholesterol (HDL-C) on CRP, as an estimate of its anti-inflammatory properties. Plasma HDL-C, apolipoprotein (apo) A-I and LCAT activity (exogenous substrate method) were measured in 260 nondiabetic men without cardiovascular disease. CRP was correlated inversely with HDL-C and apo A-I, and positively with LCAT activity (P < 0.01 to 0.001). Multivariate regression analysis demonstrated that age- and smoking-adjusted plasma CRP levels were associated negatively with HDL-C (β = − 0.224, P < 0.001) and positively with LCAT activity (β = 0.119, P = 0.034), as well as with the interaction between HDL-C and LCAT activity (β = 0.123, P = 0.026). There was also an interaction between apo A-I and LCAT activity on CRP (β = 0.159, P = 0.005). These relationships remained similar after adjustment for apo B-containing lipoproteins. In conclusion, the inverse relationship of HDL-C with CRP is attenuated by LCAT activity at higher HDL-C levels. It is hypothesized that LCAT could mitigate HDL's anti-inflammatory or antioxidative properties at higher HDL-C concentrations.     

Allometric relationships of field populations of two clonal species with contrasting life histories, Cladium jamaicense and Typha domingensis

Allometric analysis was used to examine morphological relationships in field populations of two clonal plants, Cladium jamaicense and Typha domingensis, in a Florida Everglades wetland. We found that allometric relationships of individuals sampled from field populations could be adequately derived and applied to analyzing both leaf and ramet growth responses to site differences along a nutrient gradient. Overall, the allometric relationships showed a significant departure from isometry which indicates that the relationships were size-dependent. Leaf-level morphological relationships were significantly different between species and between sites along the nutrient gradient. These differences, however, were not expressed on the ramet-level. Neither species expressed a plastic allocation response to site differences along the nutrient gradient. Biomass allocation between above- and below-ground for both species indicated significant size-dependent relationships with decreasing relative allocation below-ground with increasing size. Models for predicting total plant biomass (above- and below-ground) for both C. jamaicense and T. domingensis were developed based on two non-destructive measurements that are easily obtainable in the field. The models followed the equation log (biomass) = α + β₁ × log (height) + β₂ × log (basal area), where α was species specific while β₁ and β₂ were similar for both species but significantly different according to site along the nutrient gradient. Analysis of this model showed that plant height had a relatively greater influence on biomass than basal area at all sites. This difference was greatest at the un-enriched area where plants tend to be short and thick and the least at the moderately enriched site where the relative influence of both parameters was similar.     

Influence of food colorant and initial COD concentration on the efficiencies of micro-aerobic sequencing batch reactor (micro-aerobic SBR) for casein recovery under non-sterile condition by Lactobacillus casei TISTR 1500

The acid biocoagulants produced from non-sterile lactic acid fermentation by Lactobacillus casei TISTR 1500 were used to settle colloidal protein, mainly casein, at the isoelectric point in dairy effluent prior to secondary treatment. High concentration of azo dye (Ponceau 4R) in the dairy wastewater and the stress of starvation decreased the efficiencies of the micro-aerobic SBR. Consequently, low casein recovery obtained and organic removal suffered a decline. The number of lactic acid bacteria (LAB) also declined from log 7.4 to log 5.30 in the system fed with 400 mg L⁻¹ of the dye containing wastewater. The recovery of the system, however, showed that 25,000 mg COD L⁻¹ influent with 200 mg L⁻¹ of the dye maintained the growth of LAB in the range of log 7.74–8.12, with lactic and acetic production (2597 and 197 mg L⁻¹) and 83% protein removal. The results in this study suggested that the inhibitory effects were compensated with high organic content feeding.     

Application of vibrational spectroscopy in the quality assessment of Buchu oil obtained from two commercially important Agathosma species (Rutaceae)

Quality assessment of natural raw materials and derived consumer products is often done using conventional analytical techniques such as liquid and gas chromatography which are expensive and time consuming. This paper reports on the use of vibrational spectroscopy techniques as possible alternatives for the rapid and inexpensive assessment of the quality of ‘buchu oil’ obtained from two South African species; Agathosma betulina and Agathosma crenulata belonging to the Rutaceae family. Samples of A. betulina (55) and A. crenulata (16) were collected from different natural localities and cultivation sites in South Africa. The essential oil was obtained by hydrodistillation and scanned on Near infrared (NIR), mid infrared (MIR) and Raman spectrometers. The spectral data obtained was processed using chemometric techniques and orthogonal partial least squares discriminant analysis (OPLS-DA) was used to clearly differentiate between A. betulina and A. crenulata. The OPLS-DA technique also proved to be a useful tool to identify wave regions that contain biomarkers (peaks) that contributed to the separation of the two species. The three spectroscopy techniques were also evaluated for their ability to accurately predict the percentage composition of seven major compounds that occur in A. betulina ‘buchu’ oil. Using GC–MS reference data, calibration models were developed for the MIR, NIR and Raman spectral data to predict/profile the major compounds in ‘buchu oil’. A comparison of the three spectroscopy techniques showed that MIR together with PLS algorithms produced the best model (R²X = 0.96; R²Y = 0.88 and Q²Ycum = 0.85) for the quantification of six of the seven major oil constituents. The MIR model showed high predictive power for pseudo-diosphenol (R² = 0.97), isomenthone (R² = 0.97), menthone (R² = 0.90), limonene (R² = 0.91), pulegone (R² = 0.96) and diosphenol (R² = 0.85). These results illustrate the potential of MIR spectroscopy as a rapid and inexpensive alternative to predict the major compounds in buchu oil.     

Potential CRF1R PET imaging agents: N-fluoroalkyl-8-(6-methoxy-2-methylpyridin-3-yl)-2,7-dimethyl-N-alkylpyrazolo[1,5-a][1,3,5]triazin-4-amines

A series of N-fluoroalkyl-8-(6-methoxy-2-methylpyridin-3-yl)-2,7-dimethyl-N-alkylpyrazolo[1,5-a][1,3,5]triazin-4-amines were prepared and evaluated as potential CRF₁R PET imaging agents. Optimization of their CRF₁R binding potencies and octanol-phosphate buffer phase distribution coefficients resulted in discovery of analog 7e (IC₅₀ = 6.5 nM, log D = 3.5).     

Difluoroethylamines as an amide isostere in inhibitors of cathepsin K

The trifluoroethylamine group found in cathepsin K inhibitors like odanacatib can be replaced by a difluoroethylamine group. This change increased the basicity of the nitrogen which positively impacted the log D. This translated into an improved oral bioavailability in pre-clinical species. Difluoroethylamine compounds exhibit a similar potency against cathepsin K and selectivity profile against other cathepsins when compared to trifluoroethylamine analogs.     

Quantification of acid-base interactions based on contact angle measurement allows XDLVO predictions to attachment of Campylobacter jejuni but not Salmonella

Acid-base (AB) interactions play the most important role in bacterial attachment to surfaces and can be quantified based on electron donor/electron acceptor data from contact angle measurement (CAM) according to the extended Derjaguin-Landau-Verwey-Overbeek (XDLVO) theory. It follows that the XDLVO theory could fail to explain attachment numbers if differences in AB interactions between strains are not apparent by CAM. This study aimed to investigate the validity of the above assumptions by comparing empirical data on attachment of six bacterial strains (three strains of Campylobacter jejuni and three strains of Salmonella) to stainless steel and XDLVO theory predictions. A significant difference (P < 0.05) in AB interactions, apparent by CAM, between C. jejuni strains allowed prediction of attachment of this species by the XDLVO theory. However, the theory failed to explain the attachment numbers for Salmonella due to similar AB interactions, as established by CAM, between the three Salmonella strains. Qualitative analysis of AB interactions by microbial adhesion to solvents (MATS) revealed a significant difference (P < 0.05) in electron donor property between the three Salmonella strains suggesting that these strains may differ with respect to AB interactions. No significant correlation with respect to electron donor property (P = 0.502, r² = 12%) was apparent between CAM and MATS. These data suggest that CAM may not always reflect exactly AB interactions and that the difference in the outcomes from MATS and CAM should be considered when the XDLVO theory is used to predict bacterial attachment to surfaces.     

The peripheral blood mononuclear cell microRNA signature of coronary artery disease

Background

MicroRNAs are being used in the oncology field to characterize tumors and predict the survival of cancer patients. Here, we explored the potential of microRNAs as biomarkers for coronary artery disease (CAD) and acute coronary syndromes.

Methods and results

Using real-time PCR-based profiling, we determined the microRNA signature of peripheral blood mononuclear cells (PBMCs) from stable and unstable CAD patients and unaffected controls. 129 of 157 microRNAs measured were expressed by PBMCs and low variability between separate PBMC pools was observed. The presence of CAD in general coincided with a marked 5-fold increase (P < 0.001) in the relative expression level of miR-135a, while the expression of miR-147 was 4-fold decreased (P < 0.05) in PBMCs from CAD patients as compared to controls, resulting in a 19-fold higher miR-135a/miR-147 ratio (P < 0.001) in CAD. MicroRNA/target gene/biological function linkage analysis suggested that the change in PBMC microRNA signature in CAD patients is probably associated with a change in intracellular cadherin/Wnt signaling. Interestingly, unstable angina pectoris patients could be discriminated from stable patients based upon their relatively high expression level of a cluster of three microRNAs including miR-134, miR-198, and miR-370, suggesting that the microRNA signatures can be used to identify patients at risk for acute coronary syndromes.

Conclusions

The present study is the first to show that microRNA signatures can possibly be utilized to identify patients exhibiting atherosclerotic CAD in general and those at risk for acute coronary syndromes. Our findings highlight the importance of microRNAs signatures as novel tool to predict clinical disease outcomes.     

Determination of stability constants between complexing agents and At(I) and At(III) species present at ultra-trace concentrations

A competition method is proposed to determine the complexation constants between At(I) and At(III) species and complexing agents. The method, tested with an inorganic ligand, thiocyanate ion (SCN⁻), and an organic macromolecule, thiacalix[4]arenetetrasulfonate (LH₄) is based on solid/liquid separation or liquid/liquid extraction. For the solid/liquid separation, the cationic exchanger Dowex 50X8 was used. The interaction of At(I) and At(III) with the cationic exchanger is specific but could not be described by the expected cation exchange process. Most probably, At(I, III) interacts with a “strong” site (in weak amount) to form a surface complex at the surface of the resin organic skeleton. For the liquid/liquid separation, chloroform, toluene and hexane were used. All solvents extract astatine species with distribution coefficients varying between 0.7 and 120. The extraction process was shown to be independent of aqueous phase characteristics (pH, ionic strength) and was explained by the solvation of astatine species by the organic solvent. The effect of the addition of the thiacalix[4]arenetetrasulfonate on the solid/liquid or liquid/liquid distribution coefficients could be well described by the formation of a 1:1 complex with stability constants of log β₁ = 4.5 ± 0.4 and 3.3 ± 0.3 for At(I) and At(III), respectively. For the thiocyanate ion, the data measured in the presence of the organic solvents could be explained by the formation of both 1:1 and 1:2 At:SCN complexes. In the case of the solid/liquid separation, data analysis was hampered by the probable formation of a ternary complex between At(I, III), SCN⁻ and the functional groups of the resin. As for the calixarene, the interaction strength appeared slightly higher for At(I) (log β₂ = 5.9 ± 0.3 and log β₁ = 3.8 ± 0.2 for 1:2 and 1:1 complexed species, respectively) than for At(III) (log β₂ = 5.3 ± 0.2 and log β₁ = 2.8 ± 0.2 for 1:2 and 1:1 complexed species, respectively).     

A complete hyaluronan hydrodynamic characterization using a size exclusion chromatography-triple detector array system during in vitro enzymatic degradation

Size exclusion chromatography coupled with triple detection (online laser light scattering, refractometry, and viscosimetry) (SEC-TDA) was applied for the study of hyaluronan (HA) fragments produced during hydrolysis catalyzed by bovine testicular hyaluronidase (BTH). The main advantage this approach provides is the complete hydrodynamic characterization without requiring further experiments. HA was hydrolyzed using several BTH amounts and for increasing incubation times. Fragments were characterized in terms of weight and number average molecular weights (M_w and M_n, respectively), polydispersity index (M_w/M_n), hydrodynamic radius (R_h), and intrinsic viscosity ([η]). The Mark-Houwink-Sakurada (MHS) curves (log [η] versus log M_w) were then derived directly. Fragments covering a whole range of M_w (10-900 kDa) and size (R_h = 4-81 nm) and presenting a rather narrow distribution of molar masses (M_w/M_n = 1.6-1.7) were produced. From the MHS curves, HA conformation resulted in a change from a random coil toward a rigid rod structure while decreasing the M_w. HA enzymatic hydrolysis in the presence of a BTH inhibitor was also monitored, revealing that inhibition profiles are affected by ionic strength. Finally, a comparison of the kinetic data derived from SEC-TDA with the data from rheological measurements suggested different strengths of the two methods in the determination of the depolymerization rate depending on the hydrolysis conditions.     

Blind Prediction of Charged Ligand Binding Affinities in a Model Binding Site

Predicting absolute protein–ligand binding affinities remains a frontier challenge in ligand discovery and design. This becomes more difficult when ionic interactions are involved because of the large opposing solvation and electrostatic attraction energies. In a blind test, we examined whether alchemical free-energy calculations could predict binding affinities of 14 charged and 5 neutral compounds previously untested as ligands for a cavity binding site in cytochrome c peroxidase. In this simplified site, polar and cationic ligands compete with solvent to interact with a buried aspartate. Predictions were tested by calorimetry, spectroscopy, and crystallography. Of the 15 compounds predicted to bind, 13 were experimentally confirmed, while 4 compounds were false negative predictions. Predictions had a root-mean-square error of 1.95 kcal/mol to the experimental affinities, and predicted poses had an average RMSD of 1.7 Å to the crystallographic poses. This test serves as a benchmark for these thermodynamically rigorous calculations at predicting binding affinities for charged compounds and gives insights into the existing sources of error, which are primarily electrostatic interactions inside proteins. Our experiments also provide a useful set of ionic binding affinities in a simplified system for testing new affinity prediction methods.     

Interleukin-28B rs12979860C/T and rs8099917T/G contribute to spontaneous clearance of hepatitis C virus in Caucasians

Two single nucleotide polymorphisms rs12979860C/T and rs8099917T/G around interleukin-28B (IL28B) locus have been extensively investigated in their association with hepatitis C virus (HCV) spontaneous clearance. However, with the variable and even inconsistent results, it is necessary to conduct a meta-analysis. A literature search was conducted to seek articles about genetic variation of IL28B and spontaneous clearance of HCV. Odds ratio with 95% confidential interval were calculated to estimate their relationship. Furthermore, meta-regression analysis was performed to search for potential affective factors. A total of 8 studies including 2460 patients with chronic HCV infection and 1052 individuals with spontaneous HCV clearance met inclusion criteria, in which seven studies describing rs12979860 and three studies describing rs8099917. Analysis performed in Caucasian populations indicated that rs12979860CC and rs8099917TT contributed to HCV spontaneous clearance in both dominant model (CC vs. CT + TT, P < 1 × 10^− 4; TT vs. TG + GG, P < 10^− 4, respectively) and co-dominant model (CC vs. CT, P < 1 × 10^− 4, CC vs. TT, P < 1 × 10^− 4; TT vs. TG, P < 10^− 4, TT vs. GG, P = 0.012, respectively). Meta-regression analysis suggested that male proportion (P = 1 × 10^− 5) and mean age (P = 1 × 10^− 3) might weaken the effect of rs12979860CC, but HCV genotype 1/4 (P = 4 × 10^− 4) might contribute to it. IL28B rs12979860CC and rs8099917TT genotypes contribute to spontaneous HCV clearance in Caucasians.     

Heterologous in vitro fertilization is a good procedure to assess the fertility of thawed ram spermatozoa

A heterologous in vitro fertilization (IVF) test using calf oocytes with zona pellucida was employed to assess the fertility of thawed ram sperm samples. Six males with significant differences in fertility (P = 0.003) were used. The males were classified as having high fertility (≥42%) and low fertility (≤41%). Male fertility was not influenced by number of inseminated ewes (P = 0.584), insemination technician (P = 0.156), insemination date (P = 0.323) or farm (P = 0.207). Thawed sperm samples were employed to assess several sperm parameters for each male: motility, acrosomal integrity, viability, membrane stability, membrane phospholipid disorder, mitochondrial membrane potential and chromatin stability. These samples were used to carry out a heterologous in vitro fertilization. In vitro-matured calf oocytes (n = 716) were inseminated with thawed ram semen and in vitro cultured for 40 h. Overall, at thawing, variability among males respect to sperm quality was high. Despite this variability, there were not differences (P < 0.05) between fertility groups. Yield of hybrid embryos ranged from 31 to 59% between males. There were not differences between males (P = 0.340). However, there were differences between fertility groups (high fertility: 55%; low fertility: 39%; P = 0.020). Multiple regression analysis showed that the heterologous in vitro fertility was the only predictive parameter for in vivo male fertility. Correlation between both parameters was fair (r² = 0.760; P = 0.025). These results indicate that heterologous in vitro fertilization tests can be useful to predict the fertility of ram spermatozoa using calf oocytes with intact-zona pellucida.