Clustering of Mycobacterium avium subsp. paratuberculosis in rabbits and the environment: how hot is a hot spot?

Clustering of pathogens in the environment leads to hot spots of diseases at local, regional, national, and international levels. Scotland contains regional hot spots of Johne's disease (caused by Mycobacterium avium subsp. paratuberculosis) in rabbits, and there is increasing evidence of a link between paratuberculosis infections in rabbits and cattle. The spatial and temporal dynamics of paratuberculosis in rabbits within a hot spot region were studied with the overall aim of determining environmental patterns of infection and thus the risk of interspecies transmission to livestock. The specific aims were to determine if prevalence of paratuberculosis in rabbits varies temporally between seasons and whether the heterogeneous spatial environmental distribution of M. avium subsp. paratuberculosis on a large scale (i.e., regional hot spots) is replicated at finer resolutions within a hot spot. The overall prevalence of M. avium subsp. paratuberculosis in rabbits was 39.7%; the temporal distribution of infection in rabbits followed a cyclical pattern, with a peak in spring of 55.4% and a low in summer of 19.4%. Spatially, M. avium subsp. paratuberculosis-infected rabbits and, thus, the risk of interspecies transmission were highly clustered in the environment. However, this is mostly due to the clustered distribution of rabbits. The patterns of M. avium subsp. paratuberculosis infection in rabbits are discussed in relation to the host's socioecology and risk to livestock.     

Are cladoceran diversity and community structure linked to spatial heterogeneity in urban landscapes and pond environments?

Biodiversity patterns in cladoceran communities were investigated in urban waterbodies in relation with residential land use, pond management, and waterbody environments. We evaluated species richness in the pelagic and littoral zones of eighteen waterbodies of a large Canadian city. Gamma diversity (26 species) observed at a small scale in the urban survey was important comparatively to large-scale surveys of lakes. Beta diversity ranged from 1 to 8 species among waterbodies. We tested if littoral species greatly contributed to regional diversity in urban waterbodies. Littoral species (Chydoridae, Ilyocryptidae, Macrothricidae, Polyphemidae) accounted for 58% of the total species pool. We distinguished five cladoceran assemblages associated to different waterbodies (temporary ponds, permanent lakes, and wetlands). Cladoceran communities were more diverse and variable in permanent lakes than in temporary ponds. Changes in cladoceran species assemblages among waterbodies were driven by variations in waterbody size and phosphorus enrichment, macrophyte and algal biomass, urban density, pond management practices, and the presence of potential predators as fish and macroinvertebrates. Our study indicates that both artificial ponds and lakes and natural wetlands are valuable habitats for the conservation of cladoceran biodiversity and rare endemic species in urban regions. Further research on pond management strategies promoting urban aquatic biodiversity should be undertaken.     

Are changes in N:P ratios in coastal waters the key to increased red tide blooms?

There is mounting evidence of a global increase in nutrient levels of coastal waters through riverine and sewage inputs, and in both the numbers and frequency(as well as the species composition) of red tides. However, it is still not possible to conclude the extent to which the increase in red tides in coastal waters can be attributed to the increase in nutrient levels, since so many other factors are involved. Undoubtedly, a relationship exists between red tides and the N and P load of coastal waters, and many nutrient enrichment experiments have shown that marine phytoplankton blooms are often nutrient limited. What is now becoming clear, however, is that although in classical Liebigian terms minimum amounts can be limiting, nutrient ratios (such as N:P and Si:P) are far more important regulators. This paper reviews evidence collected by the authors from Tolo Harbour, Hong Kong together with data collected in Japanese and North European coastal waters by various authors, which indicates that both long term and relatively short term changes in the N:P ratio are accompanied by increased blooms of non-siliceous phytoplankton groups and, furthermore,that the growth of most red tide causative organisms in Hong Kong coastal water is optimized at a low N:P(atomic) ratio of between 6 and 15. This revised version was published online in August 2006 with corrections to the Cover Date.     

Fusarium spp. and Fusarium mycotoxins in maize: a problem for Flanders?

Fusarium species cause not only root, stem and ear rot with severe reductions in crop yield, they produce also toxic secondary metabolites (mycotoxins) such as deoxynivalenol (DON) and zearalenone (ZEA). During several growing seasons the presence of Fusarium spp was followed up. DON and ZEA were determined and related to infection levels. The distribution of DON and ZEA in the different plant parts was studied as well as the influence of the ensiling process on the mycotoxin content. More or less important varietal differences in susceptibility for Fusarium spp. could be detected. DON and ZEA were clearly present in most of the analysed samples. No clear relationship could be detected between visual disease symptoms and mycotoxin content. The accumulation of DON and ZEA was different for the analysed aerial plant parts. The ensiling process gave no reduction of the mycotoxin content.     

Are Helicoverpa armigera and Tetranychus spp. populations still susceptible to pesticides? A Zimbabwean study

The African bollworm, Helicoverpa armigera (Hübner), and the cotton red spider mite, Tetranychus spp., are important pests of cotton in Zimbabwe. A study to assess H. armigera resistance to fenvalerate 20 EC (Cyano (3-phenoxyphenyl) methyl 4-chloro-α-(1-methylethyl)benzene acetate) and Tetranychus spp. resistance to amitraz 20 EC (n’-(2,4-dimethylphenyl)-n-[[(2,4-dimethylphenyl)imino]methyl]-n-) was conducted at the Cotton Research Institute (CRI) during the 2005/06 cotton-growing season. Field populations of H. armigera and Tetranychus spp. were collected from some of Zimbabwe’s major cotton-growing areas of Sanyati, Umguza, Chisumbanje, Chinhoyi and the CRI in Kadoma and exposed to bioassays. The African bollworm leaf disc technique and the red spider mite attached leaf-dipping technique were used to assess responses of the African bollworm and red spider mite to the pesticides. Susceptible laboratory populations served as the standard populations and their responses were compared with those of the field populations. The graphical method and MSTAT-C probit analysis computer program were used to calculate LC₅₀ values. Although the CRI field population, used as a reference population for the registration of H. armigera insecticides, had the highest LC₅₀ value (graphical?=?0.000100000; MSTAT-C?=?0.000088195) compared with all the other field populations, overall log-dose probit bioassays on all field-collected strains of the bollworm showed no resistance to the pyrethroid (RFs?=?0.04–0.54-fold). Tetranychus spp. showed very low levels of resistance (RFs?=?1.26–2.00-fold). Continuous monitoring of major cotton pests, especially H. armigera and Tetranychus spp., from all cotton districts of Zimbabwe is vital for early detection of resistance development.     

Long-Term Frozen Storage of Urine Samples: A Trouble to Get PCR Results in Schistosoma spp. DNA Detection?

Background

Human schistosomiasis remains a serious worldwide public health problem. At present, a sensitive and specific assay for routine diagnosis of schistosome infection is not yet available. The potential for detecting schistosome-derived DNA by PCR-based methods in human clinical samples is currently being investigated as a diagnostic tool with potential application in routine schistosomiasis diagnosis. Collection of diagnostic samples such as stool or blood is usually difficult in some populations. However, urine is a biological sample that can be collected in a non-invasive method, easy to get from people of all ages and easy in management, but as a sample for PCR diagnosis is still not widely used. This could be due to the high variability in the reported efficiency of detection as a result of the high variation in urine samples’ storage or conditions for handling and DNA preservation and extraction methods.

Methodology/Principal Findings

We evaluate different commercial DNA extraction methods from a series of long-term frozen storage human urine samples from patients with parasitological confirmed schistosomiasis in order to assess the PCR effectiveness for Schistosoma spp. detection. Patientś urine samples were frozen for 18 months up to 7 years until use. Results were compared with those obtained in PCR assays using fresh healthy human urine artificially contaminated with Schistosoma mansoni DNA and urine samples from mice experimentally infected with S. mansoni cercariae stored frozen for at least 12 months before use. PCR results in fresh human artificial urine samples using different DNA based extraction methods were much more effective than those obtained when long-term frozen human urine samples were used as the source of DNA template.

Conclusions/Significance

Long-term frozen human urine samples are probably not a good source for DNA extraction for use as a template in PCR detection of Schistosoma spp., regardless of the DNA method of extraction used.     

Temporal and spatial variability of rosy apple aphid Dysaphis plantaginea populations: is there a role of the alternate host plant Plantago major?

• 1 The rosy apple aphid Dysaphis plantaginea (Passerini) (Homoptera: Aphididae) is a pest of economic importance to the apple industry worldwide, particularly in organic apple orchards where no acceptable controls are available. In the Similkameen Valley of British Columbia, Canada, the rosy apple aphid population size varies widely between orchards and between years. To explain this variation, potential environmental correlates of aphid density were evaluated. The architecture of the alternate host was also evaluated for its effect on rosy apple aphid summer survival and reproduction.
• 2 The percentage of trees infested by rosy apple aphids among orchards was in the range 8–94% for trees having at least one cluster with more than ten aphids in 2007 and in the range 0–39% in 2008.
• 3 A general linear model correlating aphid densities to the environmental variables of abundance of the alternate host (plantain Plantago spp.), foliar nitrogen, tree age and planting density, and reduced by stepwise regression, indicated that foliar nitrogen and tree age explained 33% of the variation. Abundance of the summer, alternate food plant, plantain, was not related to later aphid densities on apple trees.
• 4 Plantain architecture, however, influenced aphid numbers and 25‐fold more aphids were found on low‐lying plantain leaves than on more upright leaves. Experimental manipulation of leaf angle and leaf size showed that significantly more aphids occurred on low angle, large leaves. Finally, mowing that encouraged low lying plants prior to spring aphid migration was associated with a four‐fold greater number of both winged and wingless aphids on the plantain.

     

Epigenetic inheritance and genome regulation: is DNA methylation linked to ploidy in haplodiploid insects?

Organisms show great variation in ploidy level. For example, chromosome copy number varies among cells, individuals and species. One particularly widespread example of ploidy variation is found in haplodiploid taxa, wherein males are typically haploid and females are typically diploid. Despite the prevalence of haplodiploidy, the regulatory consequences of having separate haploid and diploid genomes are poorly understood. In particular, it remains unknown whether epigenetic mechanisms contribute to regulatory compensation for genome dosage. To gain greater insights into the importance of epigenetic information to ploidy compensation, we examined DNA methylation differences among diploid queen, diploid worker, haploid male and diploid male Solenopsis invicta fire ants. Surprisingly, we found that morphologically dissimilar diploid males, queens and workers were more similar to one another in terms of DNA methylation than were morphologically similar haploid and diploid males. Moreover, methylation level was positively associated with gene expression for genes that were differentially methylated in haploid and diploid castes. These data demonstrate that intragenic DNA methylation levels differ among individuals of distinct ploidy and are positively associated with levels of gene expression. Thus, these results suggest that epigenetic information may be linked to ploidy compensation in haplodiploid insects. Overall, this study suggests that epigenetic mechanisms may be important to maintaining appropriate patterns of gene regulation in biological systems that differ in genome copy number.     

Do the habitats,mouth morphology and diets of the mullids Upeneichthys stotti and U. lineatus in coastal waters of south-western Australia differ?

Two benthic carnivorous goatfish (Mullidae), Upeneichthys stotti (max total length, L _T= 179 mm) and U. lineatus (max L _T= 257 mm), were trawled from the inner continental shelf waters of Western Australia. U. stotti was found almost exclusively offshore at 20–35 m depth, while U. lineatus was most abundant inshore at 5–15 m depth. Smaller individuals of both species ate small, thin-shelled mysids, tanaids and amphipods, while larger fish ate large, hard-bodied isopods, carid decapods and brachyuran crabs. Classification and ordination of the mean volumetric percentage contributions of the prey (dietary samples) of both species from all sites and in each season did not lead to a clear separation between these two species. However, ordination demonstrated that the dietary samples of the two species were distinct when the two species were found together, and when fish of sequential 20-mm length intervals were used. The interspecific size-class differences were consistent with the results obtained using Schoener's overlap index, for which values >0·6 were recorded for only two of the 45 possible interspecific pairwise comparisons. Since these interspecific differences occurred despite virtually identical mouth sizes and morphologies, the two species must feed in a slightly different manner and/or in different microhabitats. While most comparable-sized fish ate tanaids and amphipods, U. stotti ate more relatively mobile epibenthic mysids, cumaceans and carid decapods, whereas U. lineatus ate more larger and slower-moving burrowing bivalves, onuphid polychaetes and brachyuran crabs. The partial partitioning of habitats, when combined with differences in the diet, would help facilitate the co-existence of these two mullids when they are abundant.     

Can different vegetative states in shallow coastal bays of the Baltic Sea be linked to internal nutrient levels and external nutrient load?

Hydrobiologia - Two different vegetative states, i.e. one clear water state dominated by benthic macrophytes and one turbid state dominated by phytoplankton, are commonly found in shallow lakes. In...     

Replication Origins and Timing of Temporal Replication in Budding Yeast: How to Solve the Conundrum?

Similarly to metazoans, the budding yeast Saccharomyces cereviasiae replicates its genome with a defined timing. In this organism, well-defined, site-specific origins, are efficient and fire in almost every round of DNA replication. However, this strategy is neither conserved in the fission yeast Saccharomyces pombe, nor in Xenopus or Drosophila embryos, nor in higher eukaryotes, in which DNA replication initiates asynchronously throughout S phase at random sites. Temporal and spatial controls can contribute to the timing of replication such as Cdk activity, origin localization, epigenetic status or gene expression. However, a debate is going on to answer the question how individual origins are selected to fire in budding yeast. Two opposing theories were proposed: the “replicon paradigm” or “temporal program” vs. the “stochastic firing”. Recent data support the temporal regulation of origin activation, clustering origins into temporal blocks of early and late replication. Contrarily, strong evidences suggest that stochastic processes acting on origins can generate the observed kinetics of replication without requiring a temporal order. In mammalian cells, a spatiotemporal model that accounts for a partially deterministic and partially stochastic order of DNA replication has been proposed. Is this strategy the solution to reconcile the conundrum of having both organized replication timing and stochastic origin firing also for budding yeast? In this review we discuss this possibility in the light of our recent study on the origin activation, suggesting that there might be a stochastic component in the temporal activation of the replication origins, especially under perturbed conditions.     

Female dispersal,social organization,and infanticide in langurs: Are they linked to human disturbance?

Female dispersal in gregarious animals can involve the desertion of a site, desertion of a social group, or both. Group desertion may be related to inbreeding avoidance. Group fidelity may result from cooperation among females in a group. Site fidelity will be more likely when food can be monopolized and when the population density is close to habitat saturation. The degree of habitat saturation was approximated with a measure of human disturbance. The influence of these various factors on the incidence of female dispersal was investigated for langur populations using data from the literature. The results suggest that female dispersal in langurs involved site desertion, not group desertion. The incidence of female dispersal may affect the social organization of langurs. I propose that when females do not disperse, male takeovers prevail, whereas in populations where female dispersal regularly occurs bisexual groups are disbanded or new groups are formed, a process I call female split-merger. Male takeover is thought to occur when site fidelity is high, female split-merger when site fidelity is low. These processes were indeed found to occur in these circumstances. The dispersal of females might prevent infanticide, whereas male takeover might promote it. Indeed, in studies with male takeover, more infants fell victim to infanticide than in studies with female split-merger. Therefore, female dispersal in langurs is an effective female counterstrategy to infanticide. The factor that had the most profound effect on female dispersal, social organization, and infanticide was habitat saturation. Habitat saturation was measured as the degree of human disturbance, and its influence on the behavior of langurs is probably of relatively recent date. This may lead to an evolutionary transient situation and may explain the discrepancy between current socioecological theories and the behavior of langurs in populations lacking female dispersal. Am. J. Primatol. 44:235–254, 1998. © 1998 Wiley-Liss, Inc.     

The ultrastructure of holdfasts, “rhizoids”, and “slime tracks” in thraustochytriaceous fungi and Labyrinthula spp.

Summary The fine structure of the holdfasts or rhizoids is described for the thraustochytriaceous organisms, Thraustochytrium motivum, Schizochytrium aggregatum, and an unidentified organism, denoted T-20, which resembles S. aggregatum and Labyrinthula spp. Labyrinthula algeriensis and L. minuta slime track ultrastructure is also described. The holdfasts, rhizoids, and tracks have the same basic fine structure and are collectively termed ectoplasmic nets. They are delimited by a unit membrane which is in continuity with the plasmalemma, contain no cytoplasmic organelles only membrane-limited cisternae, and contain a fibrogranular ground substance. The nets appear to arise from one or as many as 20 organelle complexes consist of an approximately disk-shaped electron-dense granular aggregate in which are embedded portions of cisternae of the endoplasmic reticulum or perinuclear clear continuum. The cisternae appear to contribute small (ca. 17 nm diameter) vesicles to the granular aggregate which coalesce to form internal membranes of the net elements. The sagenogenetosome underlies the plasmalemma where it evaginates to form the delimiting membrane of the main trunk element of the net. No continuous membrane separates the net contents from the cytoplasm, only the granular aggregate.In L. algeriensis, L. minuta, and T-20 the net is necessary for motility of nonflagellated, nonamoeboid cells. Presence of the nets is not associated with motility in S. aggregatum and T. motivum. The possible taxonomic significance of the observations is discussed.Contribution No. 456, Virginia Institute of Marine Science, Gloucester Point, Virginia 23062.Supported in part by the Oceanography Section, National Science Foundation, NSF Grant GA-31014.     

Microphytobenthic dynamics in a Wadden Sea intertidal flat – Part II: Seasonal and spatial variability of non-diatom community components in relation to abiotic parameters

The microphytobenthos colonizing the intertidal flats forms an important component of the Wadden Sea. Ten sampling points along a 1-km transect were studied in a fringe area of the Solthörn tidal flat, southern North Sea, in order to determine seasonal differences in the microphytobenthos. An accompanying paper deals with the major component of the flora, the diatoms; here we, focus on the minor taxonomic groups. From May 2008 to May 2009 surface sediments were collected during low tide. Variation of environmental factors as well as microphytobenthic density (abundance and chlorophyll a) were monitored. The area investigated was a mixed-sediment mudflat, with a gradient from coarse to fine. Highest biomass was obtained in summer 2008 with 215.9?±?12.6?mg chlorophyll a m^–2. In late autumn the chlorophyll a concentration decreased continuously at all investigated stations. Lowest values were detected in December 2008. Species abundances varied considerably both along the transect and seasonally, depending on species-specific requirements as well as hydrodynamic conditions (tidal currents). Higher densities of benthic pro- and eukaryotic microalgae were observed in sites characterized by fine sediments. Apart from the diatoms, the most abundant microphytobenthic group was the cyanophytes. Coccoid cyanophytes, mainly Merismopedia sp., were most abundant during summer, with cell numbers up to 5.72?×?10⁶ cells cm^?2, while diatoms dominated in winter, spring and autumn. Filamentous cyanophytes, particularly Microcoleus chthonoplastes, were most abundant during autumn, while coccoid chlorophytes (spring: Chlorococcum submarinum, Crucigenia tetrapedia, Tetraselmis suecica), euglenophytes (summer: Euglena obtusa), dinophytes (autumn: Amphidinium operculatum, A. herdmanii) and cryptophytes (autumn: Hillea marina, Hemiselmis virescens) contributed to the microphytobenthos during warmer seasons. The statistical analysis confirmed that the composition of the microphytobenthos was related to sediment features and to characteristics of particular seasons.     

Temporal Patterns of Influenza A and B in Tropical and Temperate Countries: What Are the Lessons for Influenza Vaccination?

IntroductionDetermining the optimal time to vaccinate is important for influenza vaccination programmes. Here, we assessed the temporal characteristics of influenza epidemics in the Northern and Southern hemispheres and in the tropics, and discuss their implications for vaccination programmes.MethodsThis was a retrospective analysis of surveillance data between 2000 and 2014 from the Global Influenza B Study database. The seasonal peak of influenza was defined as the week with the most reported cases (overall, A, and B) in the season. The duration of seasonal activity was assessed using the maximum proportion of influenza cases during three consecutive months and the minimum number of months with ≥80% of cases in the season. We also assessed whether co-circulation of A and B virus types affected the duration of influenza epidemics.Results212 influenza seasons and 571,907 cases were included from 30 countries. In tropical countries, the seasonal influenza activity lasted longer and the peaks of influenza A and B coincided less frequently than in temperate countries. Temporal characteristics of influenza epidemics were heterogeneous in the tropics, with distinct seasonal epidemics observed only in some countries. Seasons with co-circulation of influenza A and B were longer than influenza A seasons, especially in the tropics.DiscussionOur findings show that influenza seasonality is less well defined in the tropics than in temperate regions. This has important implications for vaccination programmes in these countries. High-quality influenza surveillance systems are needed in the tropics to enable decisions about when to vaccinate.     

Tracking Functional Guilds: “Dehalococcoides” spp. in European River Basins Contaminated with Hexachlorobenzene

Hexachlorobenzene (HCB) has been widely used in chemical manufacturing processes and as a pesticide. Due to its resistance to biological degradation, HCB has mainly accumulated in freshwater bodies and agricultural soils. “Dehalococcoides” spp., anaerobic dechlorinating bacteria that are capable of degrading HCB, were previously isolated from river sediments. Yet there is limited knowledge about the abundance, diversity, and activity of this genus in the environment. This study focused on the molecular analysis of the composition and abundance of active Dehalococcoides spp. in HCB-contaminated European river basins. 16S rRNA-based real-time quantitative PCR and denaturing gradient gel electrophoresis in combination with multivariate statistics were applied. Moreover, a functional gene array was used to determine reductive dehalogenase (rdh) gene diversity. Spatial and temporal fluctuations were observed not only in the abundance of Dehalococcoides spp. but also in the composition of the populations and rdh gene diversity. Multivariate statistics revealed that Dehalococcoides sp. abundance is primarily affected by spatial differences, whereas species composition is under the influence of several environmental parameters, such as seasonal changes, total organic carbon and/or nitrogen content, and HCB contamination. This study provides new insight into the natural occurrence and dynamics of active Dehalococcoides spp. in HCB-contaminated river basins.Halogenated organic compounds are among the most widespread environmental pollutants. Although these compounds were previously believed to be only anthropogenic, a large number of them, including aliphatic, aromatic, and heterocyclic derivatives, are introduced into the environment via biogenic and geogenic sources (9, 21). Hexachlorobenzene (HCB) is believed to be persistent in the environment (22) due to its chemical stability and its resistance to biodegradation. HCB is a hydrophobic and bioaccumulative compound and is listed in the EC Directive (15) as a “priority hazardous substance.” At the peak production of HCB in the early 1980s, thousands of tons were produced to be used as fungicides, wood preservatives, and porosity control agents or in the manufacturing of dyes. The use of HCB is no longer allowed in most countries because of its toxicity and carcinogenicity toward fish and mammals. Nevertheless, it is still being released into the environment as a by-product of various chemical processes, as a result of incomplete combustion, or from old landfills (4, 6, 7). HCB contamination has been reported in different environments. Compared to rivers in sparsely populated regions, lakes, and the sea (32, 42), significantly larger amounts of HCB could be found in river water in agricultural areas and in densely populated or highly industrialized areas. HCB concentrations were shown to positively correlate with organic matter content of sediments and soils, and European soils were observed to have the highest HCB concentrations globally (38). Several authors reported on the fate and behavior of HCB in the environment on regional or global scales. Nevertheless, our knowledge of microbial degradation of this compound in natural environments remains limited. It has been shown that HCB from air and water bodies can be removed via physical processes like volatilization and photolysis (6, 43). Adsorption also plays an important role in the removal of HCB from aquatic environments but in turn results in deposition in sediments. In these light-limited environments, biodegradation offers great potential for transforming this persistent organic pollutant (7, 29). The only known pathway for microbial dehalogenation of HCB is reductive dechlorination under anaerobic conditions, which results in formation of less chlorinated benzenes (1).The reductively dechlorinating bacteria isolated up to now belong to the Deltaproteobacteria and Epsilonproteobacteria (Geobacter, Sulfurospirillum, Desulfuromonas, and Desulfomonile), the Firmicutes (Desulfitobacterium and Dehalobacter), or the Chloroflexi (“Dehalococcoides” and related groups) (51). So far, however, Dehalococcoides is the only bacterial genus whose members are known to transform HCB. Several Dehalococcoides strains that could grow with a broad variety of chlorinated aliphatic and aromatic compounds, including chlorinated benzenes and phenols, biphenyls, chloroethenes, and dioxins, were isolated. Nevertheless, until now only two strains, Dehalococcoides sp. strain CBDB1 (3) and “Dehalococcoides ethenogenes” 195 (17), which can transform HCB to tri- and dichlorobenzenes and use the energy conserved in the process for growth, could be isolated. Besides HCB, Dehalococcoides sp. strain CBDB1 can also reductively dechlorinate chlorinated dioxins (11) and chlorophenols (2), whereas Dehalococcoides ethenogenes 195 can dechlorinate various chlorinated ethenes, 1,2-dichloroethane, and vinyl chloride (37).Until now, microbial community analyses of Dehalococcoides spp. largely focused on chlorinated ethene-contaminated aquifers or soils. The presence of Dehalococcoides spp. in uncontaminated and contaminated (with tetrachloroethene [PCE], trichloroethene [TCE], or vinyl chloride) sites from North America, Europe, and Japan was reported elsewhere (24, 26, 30, 34, 60). Furthermore, quantitative analyses targeting the Dehalococcoides 16S rRNA gene in chlorinated ethene bioremediation sites showed that 8.6 × 10³ to 2.5 × 10⁶ copies/g aquifer material (33) and 1.9 × 10² to 1.1 × 10⁷ copies/g soil (50) could be detected depending on the type of treatment applied. Although reductive dechlorination by Dehalococcoides spp. is an energy-yielding process, microcosm studies conducted under controlled environmental conditions showed that growth of the organisms is relatively slow (28). Moreover, the presence of other halorespiring species may result in competition for chlorinated compounds or electron donors. This may adversely affect the success of the reductive dechlorination of HCB in natural environments. Hence, monitoring of the indigenous dechlorinating species is needed to understand their diversity and activity in contaminated sites.The aim of this study was to assess the diversity of active Dehalococcoides spp. in HCB-polluted river basins and to reveal the links between species composition and abundance with changing environmental parameters, using 16S rRNA and reductive dehalogenase-encoding gene-targeted molecular analyses, in combination with multivariate statistics. River sediment, floodplain, and agricultural soil samples were collected from two European rivers, the Ebro (Spain) and the Elbe (Germany), between 2004 and 2006. This study provides new insights on the natural occurrence and dynamics of reductively dechlorinating bacteria, generating important knowledge toward understanding and predicting microbial HCB transformation.