Benthic community response to a passive fishing gear in a coastal lagoon (South Brazil)

The influence of a passive shrimp fishing gear on benthic communities was studied at Laguna Estuarine System (South Brazil), a shallow choked coastal lagoon. The gear is composed by a group of fyke nets (25 mm mesh size) set in contact to the bottom, fixed with stakes forming a cage-like structure (around 30 m²). Samplings were conducted in the two main fishery areas of the estuarine system, Mirim (sand bottoms) and Imaruí (muddy bottoms) lagoon, in May 2005. In each area, 10 fyke net enclosures and 10 nearby sites without nets (control) were sampled. Microphytobenthos biomass (chlorophyll a and phaeopigments), number of taxa/species, density, Hill’s number N ₁ and N ₂, and estimated number of species (ES₁₀₀) were used as community attributes. For the nematodes, values of the maturity index and abundance of Wieser’s feeding type were used as well. The effects of the small-scale passive shrimp fishing gear on the coastal lagoon bottoms were dependent on the benthic component analyzed and the type of sediment. Whereas macrofauna was not affected by the net enclosures, meiofauna and nematodes, particularly from the mud sites were. At the sand site, the fyke net enclosures caused a decrease in the microphytobenthos biomass and changed the relative abundances of non-selective deposit feeding and epigrowth-feeding nematodes. The results indicated that small-scale static nets, such as the studied fyke enclosures, produced low intensity levels of disturbance. However, the enclosed area by nets at Laguna had already reached around 25,000 m². Given the large proportion of the coastal population involved and the area closed by nets, management policies should consider site-specific differences within the same estuarine system.     

Benthic algal response to hyporheic-surface water exchange in an alluvial river

We studied the response of benthic algae to points of hyporheic-surface water exchange in the main channel of the Middle Fork Flathead River within the Nyack Flood Plain, Montana. We examined hyporheic exchange at 120 sites using piezometers and measuring vertical hydraulic gradient (VHG), hydraulic conductivity, and vertical discharge. We removed benthic algae from a single cobble at each site, and we used VHG to group sampling sites for statistical analysis. Algal cell density and chlorophyll a concentration were significantly higher at sites with hyporheic discharge (+VHG, upwelling) compared to both sites with hyporheic recharge (−VHG, downwelling) and sites with no hyporheic-surface water exchange (=VHG, neutral) (ANOVA, P < 0.05). The assemblages of algae at upwelling sites were also significantly different from downwelling and neutral exchange sites (ANOSIM, P < 0.05). Filamentous green algae Stigeoclonium sp. and Zygnema sp. and a chrysophyte, Hydrurus foetidus (Villars) Trevisan were abundant at upwelling sites, whereas an assemblage of diatoms Achnanthidium minutissimum (Kützing) Czarnecki, Cymbella excisa Kützing, Diatoma moniliformis Kützing, and Gomphonema olivaceoides Hustedt, were the most abundant taxa at downwelling and neutral exchange sites, occurring attached to, or in close association with the stalks of Didymosphenia geminata (Lyngbye) Schmidt. These data show that benthic algal communities are structured differently depending on the direction of hyporheic flux in the main channel of a large alluvial river, suggesting that hyporheic-surface exchange may influence the spatial distribution of main-channel benthic algae in rivers with hyporheic-surface water connectivity. Handling editor: J. Padisak     

Differential strain response in alkaline phosphatase activity to available phosphorus in Microcoleus autumnalis

Toxic, benthic cyanobacterial proliferations have increased in frequency and severity globally and can have negative impacts on aquatic ecosystems, recreation and human health. Microcoleus autumnalis has been associated with numerous animal fatalities and is causing increasing concern. It tends to grow in systems with moderate dissolved inorganic nitrogen and very low dissolved reactive phosphorus. Acquisition of nutrients, particularly phosphorus, from organic sources may explain how M. autumnalis can reach the high biomass in these relatively nutrient deplete environments. In the present study the effect of phosphorus concentration and source on alkaline phosphatase activity was investigated in toxic and non-toxic M. autumnalis strains. Toxic strains exhibited significantly higher alkaline phosphatase activity than non-toxic strains (p < 0.05), and alkaline phosphatase activity increased in all strains under phosphorus-depleted conditions (p < 0.05). Alkaline phosphatase activity was also present in environmental M. autumnalis mats, though at lower levels than in laboratory experiments. The presence of alkaline phosphatase activity indicates that the acquisition of phosphorus from organic phosphorus sources may contribute to the ability of M. autumnalis to grow in systems with low dissolved reactive phosphorus.     

Identification and characterization of humic substances-degrading bacterial isolates from an estuarine environment

Bacterial isolates were obtained from enrichment cultures containing humic substances extracted from estuarine water using an XAD-8 resin. Eighteen isolates were chosen for phylogenetic and physiological characterization based on numerical importance in serial dilutions of the enrichment culture and unique colony morphology. Partial sequences of the 16S rRNA genes indicated that six of the isolates were associated with the alpha subclass of Proteobacteria, three with the gamma-Proteobacteria, and nine with the Gram-positive bacteria. Ten isolates degraded at least one (and up to six) selected aromatic single-ring compounds. Six isolates showed ability to degrade [(14)C]humic substances derived from the dominant salt marsh grass in the estuary from which they were isolated (Spartina alterniflora), mineralizing 0.4-1.1% of the humic substances over 4 weeks. A mixture of all 18 isolates did not degrade humic substances significantly faster than any of the individual strains, however, and no isolate degraded humic substances to the same extent as the natural marine bacterial community (3.0%). Similar studies with a radiolabeled synthetic lignin ([beta-(14)C]dehydropolymerisate) showed measurable levels of degradation by all 18 bacteria (3.0-8.8% in 4 weeks), but mineralization levels were again lower than that observed for the natural marine bacterial community (28.2%). Metabolic capabilities of the 18 isolates were highly variable and generally did not map to phylogenetic affiliation.     

Benthic diatom community composition in three regions of the Great Barrier Reef,Australia

Despite their ecological importance, very little is known about the taxonomy and ecology of benthic diatoms in coral-reef ecosystems. Diatom densities and community compositions were investigated in three distinct regions of the Great Barrier Reef (GBR): (a) Wet Tropics (WT), (b) Princess Charlotte Bay (PCB), and (c) the Outer Shelf (OS). About 209 taxa were observed in the GBR sediments studied, with an average abundance of 2.55 × 10⁶ cells ml⁻¹ in the upper 1 cm of sediment. Total diatom abundances were about twice as high in inshore reefs of PCB and WT compared with OS reefs. A redundancy analysis (RDA) of diatom composition clearly grouped the three regions separately but showed little influence of grain size, nitrogen and organic carbon content of the sediments. The only distinct correlates were inorganic carbon and the distance to the mainland associated with OS communities. Analysis of similarity (ANOSIM) of diatom community composition revealed significant differences between all three regions. Indicator values showed that most highly abundant taxa occurred in all regions. However, several taxa were clearly identified as characteristic of particular regions. It is hypothesised that variations in nutrient and light availability are the most likely explanation for the observed differences in community composition.     

滇池底栖无脊椎动物群落结构及水质评价

滇池位于云南省昆明市西南郊,海拔1885m的高原面上,受纳盘龙江、宝象河等21条入湖水源,湖水出口南流转北注入金沙江。滇池南北长39．0km^2,东西最宽12．5km^2,最窄2．44km^2,湖岸线151．2km^2,面积为330．0km^2,属于高原构造型亚热带石灰岩富营养型湖。     

Toxicity of methyltins to microbial populations in estuarine sediments

Summary The toxicities of three organotin compounds were examined on natural populations of microorganisms in sediments from Boston Harbor. Mono-, di-and trimethyltins were toxic to organisms from these sediments, and the di-and trimethyl compounds were more toxic than the monomethyl compound as measured by either viable counts or by [³H]thymidine uptake. Approximately three to eight times as much organotin was required to achieve the same effect measured by thymidine uptake as measured by viable counts. The results of replica plating experiments suggest that most estuarine organisms which are resistant to one methyltin will be resistant to other methyltins. LC-values suggest that at concentrations reported for methyltins in aquatic environments, methyltins alone are not likely to cause major alterations in the microbial flora. However, these compounds may combine with other stressors to alter the composition of natural populations.     

青龙河底栖无脊椎动物群落结构及其水质评价

本文论述了青龙河底栖生物种类、数量、分布和结构等特点及其与环境因子间的关系。应用Beck、Gleason、Shannon、Simpson等生物指数对水质状况进行评价。结果表明青龙河除个别断面受污染外,大部分河段属尚清洁水。     

Fish community structure response to major habitat changes within the littoral zone of an estuarine coastal lake

Synopsis The littoral environment and fish fauna of Swartvlei, an estuarine lake, was monitored for four years during which major habitat changes occurred. Initially (1979) the zone was dominated by the submerged macrophytes Potamogeton pectinatus, Chara globularis and Lamprothamnium papulosum. This plant community was replaced by filamentous algal mats during 1980 and with the disappearance of these mats in 1981 the littoral zone was transformed into a sandy habitat. There was a highly significant decline in the numbers of fishes in the littoral zone between the macrophyte and sand phases but no significant decrease in fish biomass between the two phases. Analysis of gill net catches revealed an increase in the CPUE of the family Mugilidae between the macrophyte and sand phases but a decline in the CPUE of vegetation associated species such as Monodactylus falciformis and Rhabdosargus holubi over the same period. The increase in mullet stocks during the sand phase was attributed to epipsammic micro-algal production and the input of allochthonous detritus during the 1981 floods. The three fish species diversity indices used in this study showed minor fluctuations between the habitat phases and these variations were related to changes in the equitability of distribution between the individual species within each habitat type. The numbers of fish species recorded during the macrophyte, algal mat and sand phases varied by less than 20%. The resilience of estuarine fishes to major alterations in their environment was illustrated by the fact that all fish species recorded at the beginning of 1979 were present at the end of 1982, despite major habitat and food resource changes.     

Diversity as a measure of benthic macroinvertebrate community response to water pollution

The assumption that water pollution causes a depression in the diversity of benthic macroinvertebrates as measured by the Shannon index and similar diversity indices is questioned. An interpretation of the community response of benthic macroinvertebrates to pollution in the Millers River, Massachusetts is developed from species presence-absence and abundance data in conjunction with published information on the species' environmental tolerances as compared to chemical water quality data. This interpretation is compared with one derived solely from diversity index values. The interpretations are quite different; the differences may be attributed to other environmental factors such as impoundments and flow reductions which influence the fauna and thus the diversity index value, but which are not related to pollution. In addition, several intrinsic features of the diversity indices increase their bias.Contribution No. 47 of the Massachusetts Cooperative Fishery Unit jointly supported by the U.S. Bureau of Sport Fisheries and Wildlife, the Massachusetts Division of Fisheries and Game, the Massachusetts Division of Marine Fisheries, and the University of Massachusetts.     

A comparison of thiosulphate-citrate-bile salts-sucrose (TCBS) agar and thiosulphate-chloride-iodide (TCI) agar for the isolation of Vibrio species from estuarine environments

AIMS: The purpose of this study was to compare a recently described medium, thiosulphate-chloride-iodide (TCI), for the isolation of estuarine vibrios with thiosulphate-citrate-bile salts-sucrose (TCBS). METHODS: A total of 492 colonies which developed on these media from estuarine water samples taken monthly over a 10-month period were examined. RESULTS: A much larger number of colonies developed on TCBS than TCI, and minimal taxonomic criteria indicated that a higher percentage (61%) of TCBS colonies could be identified as Vibrio spp. when compared with TCI (46%). SIGNIFICANCE: This study suggests that TCBS is a superior medium when compared with TCI for the isolation of Vibrio spp. from estuarine waters. Because of the public health risk presented by V. vulnificus, V. parahaemolyticus, V. cholerae and other vibrios, the selection of the most appropriate medium for their isolation is extremely important.     

Acid-base response of bacterial suspensions

The response of suspensions of non-proliferating bacteria to external pH ranging from 3.6 to 9.9 was examined. The acid-base response is affected by the number of viable cells in the suspensions and culture conditions (aerobiosis or anaerobiosis) but not by culture time, composition of the culture medium or the age of suspensions. The results with carbonylcyanide m-chlorophenylhydrazone-and N, N′- dicyclohexylcarbodiimide-treated cells indicated that passive proton conductance and proton translocation by ATP could be involved in this response. pH profiles of suspensions of 18 chemoheterotrophic Gram-negative and Gram-positive bacteria support the hypothesis that the proton gradient generated by an alkali or an acid shift could be dissipated by bacteria with respiratory metabolism. Received 2 June 1998/ Accepted in revised form 6 August 1998     

Chemotactic response of Ginseng bacterial soft-rot to Ginseng root exudates

Our purpose was to evaluate chemotactic response of Ginseng bacterial soft-rot to ginseng root exudates. The exudates of plant roots has a significant influence on the population changes of rhizosphere microorganisms and chemotaxis is an important way in which many pathogens sense the signals of host plants and invade the host plants. In this study, with the capillary method, we tested the chemotactic responses of Ginseng bacterial soft-rot for three ginseng roots exudates under four chemotactic parameters (concentration, temperature, pH and time). The results showed that the chemotatic response of the Ginseng bacterial soft-rot for the ginseng roots exudates at the water layer where pH = 7 and the concentration was 0.0125 mg/L reached its peak value under the circumstance that the exudates was cultivated for 60 min at 25 °C. The chemotatic ratios were respectively 124.89% and 89.44%. For the butanol extract layer and the petroleum ether faction at the concentration of 0.125 mg/L and the pH value at 7, the ginseng roots exudatess reached peak values at 25 °C and 30 °C and 60 min and 75 min respectively, and the chemotatic ratios were respectively 139.64% and101.87%, and 115.29% and 81.36%. The three ginseng roots exudates had positive effects for the chemotaxis of the Ginseng soft-rot bacteria, but the effect declined as the concentration increased.     

Depth profile of sulfate-reducing bacterial ribosomal RNA and mercury methylation in an estuarine sediment

Abstract: The community structure of complex anaerobic microbial communities has been difficult to elucidate because of an inability to cultivate most of the contributing populations. In this study, the distribution of sulfate-reducing bacteria (SRB) in anaerobic sediments was determined using oligonucleotide probes complementary to the 16S ribosomal RNAs of major phylogenetic groups. Sediment cores were collected from Santa Rosa Sound in northwest Florida, and sectioned by depth into 1 to 2 cm fractions. Nucleic acids were extracted from each fraction and hybridized with the SRB-specific ribosomal RNA probes. SRB ribosomal RNAs accounted for almost 5% of the microbial community ribosomal RNA pool in the 3–4 cm depth fraction and were dominated by Desulfovibrionaceae ribosomal RNA. The SRB ribosomal RNA peak coincided with mercury methylation, an activity attributed to SRB. Profiles of the ribosomal RNAs indicate that SRB populations in sediments are stratified by depth.     

Urbanization effects on different biological organization levels of an estuarine polychaete tolerant to pollution

Estuarine species exposed to diffuse contaminants might trigger either positive or negative feedbacks in many biological scales. Their life history traits performing at different biological organization levels could propose an organism as a useful indicator of environmental pollution, mainly addressed as sensitive or tolerant species. To track the effects of contaminants from the molecular to the population level of the polychaete Laeonereis acuta we utilize a framework of biomarkers. For this purpose we assessed the L. acuta frequency of micronuclei at the molecular level, the body size and biomass at individual level, and the production-to-biomass ratio at population level in five urbanized and five non-urbanized estuaries in southern Brazil. L. acuta had significantly varying positive and negative feedbacks between urbanized and non-urbanized estuaries at multiple biological scales. These generalized effects in all biological organization scales indicate a pollution impact on the polychaete. The main responses accounted for individuals becoming lengthy and weighty, but with molecular damage. The L. acuta allocation of energy to body enlargement in polluted environments, and a consequent reduced population turnover, contradicts the expected from an opportunist species. The damages in DNA and the internal strategies of individuals, as antioxidant defense mechanisms, could favor resistance of the population and tolerance to pollutants. All of these characteristics induce bioaccumulation and could cause bottom-up pollution transfer compromising the estuarine food web. These results, ascertain that L. acuta could be considered as a tolerant species, instead of an opportunistic, and as a useful indicator of environmental pollution in estuaries.     

Biogeochemical response to physical forcing in the water column of a warm monomictic lake

Based on microstructure measurements of temperature and horizontalcurrent velocity the physical structure in the water column of Lake Kinneretwascharacterized as a five layer system consisting of a surface mixed layer, lowerepilimnion, metalimnion, upper hypolimnion and benthic boundary layer. Usingoxygen and hydrogen sulfide as natural chemical tracers, the time scale ofchemical change was identified in relation to advection, mixing and biologicalprocesses. Rapid changes due to advection that took place on an hourly timescale were removed by referring the data back to the temperature of the water.Biological activity dominated the hydrochemical changes observed in the meta-and upper hypolimnion. These were expressed by DO depletion rates of 2.0 and0.4g m^–2 d^–1, respectively.Verticaland horizontal mixing were shown to occur on a seasonal time scale. Once thechemical stratification process was completed the slow mixing through thebenthic boundary layer became the limiting factor for subsequent reactions inthe water column.     

The adaptation of nitrate-reducing bacterial communities in estuarine sediments in response to overlying nitrate load

Examination of the nitrate and ammonium concentrations at 10 stations in the estuary of the River Colne, Essex, UK, revealed the presence of a pollution gradient within the estuary. The greatest concentrations of nitrate, both in the water and within the sediment, were measured near the outfall of a sewage works from which well-nitrified effluent was discharged. Measurements of the rate of nitrate reduction at each site, incubated at constant temperature and constant initial nitrate concentration, showed adaptation of the sediment bacterial communities, with those sediments having greater nitrate concentrations exhibiting faster rates of nitrate reduction. In addition, the proportion of nitrate reduced to gaseous products (denitrified), rather than to nitrate or ammonium, also increased with the nitrate concentration. These changes were interpreted as being the result of adaptation of the in situ sedimentary bacterial nitrate-reducing communities in response to the ambient concentrations of nitrate at each station.     

Physiological (antioxidant) responses of estuarine fishes to variability in dissolved oxygen

Cycles of dissolved oxygen (DO) in estuaries can range from anoxia to various levels of supersaturation (200–300%) over short time periods. Aerobic metabolism causes formation of damaging reactive oxygen species (ROS), a process exacerbated by high or low DO. Fish can generate physiological defenses (e.g. antioxidant enzymes) against ROS, however, there are little data tying this to environmental conditions. We investigated physiological defenses generated by estuarine fishes in response to high DO and various DO cycles. We hypothesized that chemical defenses and/or oxidative damage are related to patterns of DO supersaturation. Specific activities of antioxidants in fish tissues should be positively correlated with increasing levels of DO, if high DO levels are physiologically stressful. We caged common benthic fishes (longjaw mudsucker, Gillichthysmirabilis, and staghorn sculpin, Leptocottusarmatus, in CA and spot, Leiostomusxanthurus and pinfish, Lagodonrhomboides, in NC) during summer 1998 in two estuarine sites in southern North Carolina and two in central California. At each site a water quality meter measured bottom DO, salinity, temperature, depth, pH and turbidity at 30 min intervals throughout the study. These sites exhibited a wide variety of dissolved oxygen patterns. After 2 weeks in the cages, fish gills and livers were analyzed for antioxidant enzymes (glutathione peroxidase, catalase and superoxide dismutase) and the metabolite glutathione. All fish exhibited antioxidant enzyme activity. There was a significant site-dependent effect on all enzyme activities at the NC sites, with the most activity at the site with the highest DO cycling and the most DO supersaturation. There was a trend towards higher enzyme activities under high DO levels at the CA sites.