Composition and relative health of remnant vegetation fringing lakes along a salinity and waterlogging gradient

Extensive land clearing for agriculture in south-west Western Australia has led to highly fragmented patches of remnant vegetation. In this landscape, the fringing vegetation of lakes has an important conservation priority in a biologically diverse region but is vulnerable to altered hydrological regimes and easily degraded by waterlogging and salinity. Protection of the fringing vegetation with direct intervention approaches such as drainage or pumping schemes requires knowledge of the tolerance or ‘coping’ range of species targeted for conservation. To obtain this information the health of vegetation in relation to waterlogging and salinity is assessed in two lake systems north of Esperance in south-western Australia. The lower reaches of both systems are dominated by healthy halophytic species. Mesophytes, phreatophytes, xerophytes, and combinations of these classes dominate the upper reaches but are mostly degraded. There are unhealthy and healthy pockets of mesophytic, phreatophytic, xerophytic species, and combinations of these classes occurring at similar elevations above shallow groundwater, indicating that temporal hydroperiod thresholds are important for these species.     

Vegetation structure and pollination in the Venezuelan Central Plain

Classes of pollination agents and pollination system specificities were evaluated according to the vegetation structure in the Venezuelan Central Plain. Two main questions were examined: (i) Do the frequencies of pollination categories estimated at plant species level differ from those estimated considering plant abundance? and (ii) Does plant abundance differ according to categories of pollination in the context of each vegetation attribute? The frequencies of classes of pollination agents and systems of pollination specificity were estimated at plant species and plant abundance level for the community, habitats, life-forms, strata, horizontal disposition, and season. Besides, plant abundance of each category of pollination agent classes and systems of pollination specificity were statistically compared. Most of the comparisons between the frequency of plant species and plant abundance were non-significant (58.3%). The multivariate classifications of life-forms and habitats according to pollination agent classes using plant species and plant abundance separately are very similar. In both analyses, perennial herbs come out as a separate group, which is associated with a comparable frequency distribution of pollination agent classes. The frequency distributions of polyphilous, oligophilous, and monophilous species were statistically higher for plant abundance than for plant species in the disturbed area and in the lowest stratum (D), which is primarily associated with the relation between life-forms and vegetation strata. The average values of abundance for wind-pollinated plants were found to be larger than those for other categories of pollination systems specificity and pollination agent classes, respectively, in the forest–savanna transition and overall community. All anemephilous species have clumped distribution and plant abundance was higher in this case than what was found with the other categories of pollination specificity with clumped distribution. Estimates of pollination agent classes at plant species level proved to be a practical method to estimate pollination frequency, mainly for those studies related to the floristic composition of the community. The large values of abundance for wind-pollinated species are in concordance with the savanna–forest mosaic vegetation growing in the Venezuelan Central Plain, but are in contrast with the comparatively low percentage of wind-pollinated species recorded.     

Periodicity and boundedness of solutions of generalized differential equations of growth

Sufficient conditions are given for the existence of periodic solutions of differential equations, having as special cases the equations used to describe the competition between two species. The Poincaré bifurcation theory is used to secure one set of conditions, and another set of conditions is secured through a generalization of a method of V. Volterra. The question of boundedness is considered and conditions implying boundedness and conditions implying that populations are bounded away from zero are given. Several integrable classes of systems are discovered and a particular example having periodic solutions is examined in detail. This research was supported by the Air Force Office of Scientific Research under Grant 62-207.     

Local plant species richness increases with regional habitat commonness across a gradient of forest productivity

We tested the prediction that forest habitat types with relatively high productivity are not only relatively low in species richness but are also regionally uncommon. This relationship was supported by an analysis of data from 146 forest communities in southern Ontario, Canada. Potential forest habitat productivity was determined based on a classification scheme developed for the Canadian Land Inventory (CLI) project. Vascular plant species richness approximated a unimodal distribution across forest productivity classes with the lowest mean species richness recorded for the two most productive classes. The contemporary regional commonness of forest habitat productivity classes were also displayed as a unimodal frequency distribution. Hence, mean species richness per CLI class was positively correlated with the regional area of land encompassing each of these productivity classes and this relationship was increasingly significant at increasingly larger spatial scales of regional CLI class land areas. These results are consistent with the species pool hypothesis, which postulates that species richness is relatively low in highly productive habitats because such habitats have been relatively uncommon in both space and time and hence, have had relatively little historical opportunity for the origination of adapted species.     

An ecological classification of odonate mating systems: the relative influence of natural, inter-and intra-sexual selection on males

We separate the mating systems of odonates into two main groups: non-resource and resource-based systems. These two groups comprise five classes of mating system: encounter-limited mating, free female choice, resource-limitation, resource-control and female-control. These classes are consistent with previous classifications of odonate mating systems and with the overall classification of mating systems by Emlen & Oring (1977: Science, 797: 215–223). Whereas Emlen & Oring's classification of mating systems was concerned with differences in sexual selection between mating systems, our classification of odonate mating systems also addresses the influence of inter-and intra-sexual selection on males within a mating system. Predictions about such relationships are useful in multivariate analysis of odonate lifetime reproduction success. Among most odonate mating systems, much of the sexual selection on males results from male-male competition for access to mates. Sexual selection via female choice is relatively less important or operates indirectly through females' choices of times or places to mate. We place resource-control and resource-limitation at opposite ends of a resource-defence continuum and postulate female choice will have greater influence in mating systems that are more like a resource-limitation system and less influence in mating systems that are more like resource-control. Sexual selection is likely to be weak in species that resort to encounter-limited mating where longevity is likely to contribute strongly to variation in reproductive success. Females have limited opportunity to exercise choice among males in the female-control mating system and in this system selection is most likely to operate on male characters which contribute to their efficiency in searching for and capturing mates. Predictions about the differences in the intensity of sexual selection between different odonate mating systems should be made on the basis of the variation in the number of potential fertilizations per male or even per ejaculate, rather than the number of fertilizable females per male. Very different mating systems could result in similar patterns of variation in male reproductive success.     

Spectral tuning and the visual ecology of mantis shrimps

The compound eyes of mantis shrimps (stomatopod crustaceans) include an unparalleled diversity of visual pigments and spectral receptor classes in retinas of each species. We compared the visual pigment and spectral receptor classes of 12 species of gonodactyloid stomatopods from a variety of photic environments, from intertidal to deep water (> 50 m), to learn how spectral tuning in the different photoreceptor types is modified within different photic environments. Results show that receptors of the peripheral photoreceptors, those outside the midband which are responsible for standard visual tasks such as spatial vision and motion detection, reveal the well-known pattern of decreasing lambdamax with increasing depth. Receptors of midband rows 5 and 6, which are specialized for polarization vision, are similar in all species, having visual lambdamax-values near 500nm, independent of depth. Finally, the spectral receptors of midband rows 1 to 4 are tuned for maximum coverage of the spectrum of irradiance available in the habitat of each species. The quality of the visual worlds experienced by each species we studied must vary considerably, but all appear to exploit the full capabilities offered by their complex visual systems.     

The effect of taxonomic resolution on the assessment of ecological water quality classes

Within the ecological assessment of running waters based on benthic macroinvertebrates different levels of taxonomic resolution (species, genus, family and higher) are in use. Although assessment systems are often developed with detailed data on species level, water managers and other end-users could like to use data on higher taxonomic levels to assess the ecological quality of a water body because of limited human or money resources. The question that arises is, if an assessment system built with species level data is also applicable using data with a higher taxonomic resolution. Within the AQEM project a multimetric assessment system was developed to evaluate the ecological quality classes (from bad (1) to high (5) ecological quality) of different stream types throughout Europe. The present study focuses on the question whether the resulting water quality class changes using the AQEM Assessment Software (AAS) with different taxonomic resolutions and if yes, how large the deviations of ecological quality classes from the original classes are and if the deviations are unidirectional. For analyses data from four Austrian and two Dutch stream types were used. It is demonstrated that the assignment of a site to an ecological quality class may change if different taxonomic levels are used. Deviations in both directions (higher/lower ecological quality class) were observed. In most cases the divergence was only one ecological quality class, but also larger deviations occasionally occurred. The causes of changes in the assessment were investigated by separately looking into the underlying metrics of the multimetric system. Some of the evaluated metrics rely on autecological information on species level and are simply not applicable on higher taxonomic levels. Other metrics worked on higher taxonomic levels as well and showed more or less good distinctions between ecological quality classes. It is concluded that the AQEM Assessment Software is not applicable if data on higher taxonomic levels are used. As the deviations were not unidirectional and ranged from one to three ecological quality classes, it is not possible to include a correction factor for using the software with higher taxonomic resolution data.     

Multiple shifts between violet and ultraviolet vision in a family of passerine birds with associated changes in plumage coloration

Colour vision in diurnal birds falls into two discrete classes, signified by the spectral sensitivity of the violet- (VS) or ultraviolet-sensitive (UVS) short wavelength-sensitive type 1 (SWS1) single cone. Shifts between sensitivity classes are rare; three or four are believed to have happened in the course of avian evolution, one forming UVS higher passerines. Such shifts probably affect the expression of shortwave-dominated plumage signals. We have used genomic DNA sequencing to determine VS or UVS affinity in fairy-wrens and allies, Maluridae, a large passerine family basal to the known UVS taxa. We have also spectrophotometrically analysed male plumage coloration as perceived by the VS and UVS vision systems. Contrary to any other investigated avian genus, Malurus (fairy-wrens) contains species with amino acid residues typical of either VS or UVS cone opsins. Three bowerbird species (Ptilonorhynchidae) sequenced for outgroup comparison carry VS opsin genes. Phylogenetic reconstructions render one UVS gain followed by one or more losses as the most plausible evolutionary scenario. The evolution of avian ultraviolet sensitivity is hence more complex, as a single shift no longer explains its distribution in Passeriformes. Character correlation analysis proposes that UVS vision is associated with shortwave-reflecting plumage, which is widespread in Maluridae.     

Changes in Patterns of Species Co‐occurrence across Two Tropical Cloud Forests Differing in Soil Nutrients and Air Temperature

Patterns of co‐occurrence of species are increasingly used to examine the contribution of biotic interactions to community assembly. We assessed patterns of co‐occurrence at four scales, in two types of tropical cloud forests in Hainan Island, China (tropical montane evergreen forests, TMEF and tropical dwarf forests, TDF) that varied significantly in soil nutrients and temperature. We tested if the patterns of co‐occurrence changed when we sorted species into classes by abundance and diameter at breast height (dbh). Co‐occurrence differed by forest type and with plot size, with significant species aggregation observed across larger plots in TDF and patterns of species segregation observed in smaller plots in TMEF. Analyses of differential abundance and dbh classes also showed that smaller plots in TMEF tend to have negative co‐occurrence patterns, but larger plots in TDF tend to show patterns of aggregation, suggesting competitive and facilitative interactions. This underscores the scale‐dependence of the processes contributing to community assembly. Furthermore, it is consistent with predictions of the stress gradient hypothesis that facilitation will be most important in biological systems subject to abiotic stress, while competition will be more important in less abiotically stressful habitats. Our results clearly demonstrate that these two types of tropical cloud forest exhibit different co‐occurrence patterns, and that these patterns are scale‐dependent, though independent of plant abundance and size class.     

New observations on the bioluminescence of echinoderms

Bioluminescence has been observed in two species of Ophiuroidea, six species of Asteroidea, nine species of Holothuroidea and two species of Crinoidea. The luminescent responses are described and the intensities and time courses of the responses of some species are given.
Histological investigations have indicated possible luminous cells in the Holothuroidea, but the results in other classes remain equivocal. Preliminary analyses of the chemistry of bioluminescence indicate that a similar system may be responsible for bioluminescence in all four classes, although the visible manifestations of the system vary considerably.     

The virtual absence of antigenic cross-reactivity between functionally distinct trout hemoglobins.

The antigenic properties of the hemoglobins of two species of rainbow trout, Salmo irideus and Salmo gairdneri, have been compared. Each of these species possess two different classes of hemoglobins, the members of the first of which have no Bohr effect while those of the second exhibit a pronounced pH dependence of their ligand affinities. The hemoglobins from these two species are antigenically indistinguishable. However, between the two classes of hemoglobins there is almost no immunological cross-reactivity.     

Occurrence of Multiple Ribonucleotide Reductase Classes in γ-Proteobacteria Species

Ribonucleotide reductase (RNR) is central to de novo synthesis of deoxyribonucleotides and essential for all living cells. Three classes have been described; class I is oxygen dependent and represented by two subclasses, Ia (NrdAB) and Ib (NrdEF); class II (NrdJ) is indifferent to oxygen; and class III (NrdDG) is oxygen sensitive. More than one class can be found in an organism, reflecting the oxygen status of its environment. We have investigated, by using PCR and Southern blot, the occurrence of the different classes among species of the γ-Proteobacteria. Class III are present in all species tested, but the presence of the other classes varies. Some species contain one unique additional enzyme, class Ia, Ib, or II, whereas others contain two additional enzymes, class Ia and Ib, or class Ia and II. Received: 8 May 2000 / Accepted: 13 June 2000     

Evolutionary aspects of gonadotropin-releasing hormone and its receptor

Summary 1. Gonadotropin-releasing hormone (GnRH) was originally isolated as a hypothalamic peptide hormone that regulates the reproductive system by stimulating the release of gonadotropins from the anterior pituitary. However, during evolution the peptide was subject to gene duplication and structural changes, and multiple molecular forms have evolved.2. Eight variants of GnRH are known, and at least two different forms are expressed in species from all vertebrate classes: chicken GnRH II and a second, unique, GnRH isoform.3. The peptide has been recruited during evolution for diverse regulatory functions: as a neurotransmitter in the central and sympathetic nervous systems, as a paracrine regulator in the gonads and placenta, and as an autocrine regulator in tumor cells.4. Evidence suggests that in most species the early-evolved and highly conserved chicken GnRH II has a neurotransmitter function, while the second form, which varies across classes, has a physiologic role in regulating gonadotropin release.5. We review here evolutionary aspects of the family of GnRH peptides and their receptors.     

Computing phylogenetic diversity for split systems

In conservation biology it is a central problem to measure, predict, and preserve biodiversity as species face extinction. In 1992 Faith proposed measuring the diversity of a collection of species in terms of their relationships on a phylogenetic tree, and to use this information to identify collections of species with high diversity. Here we are interested in some variants of the resulting optimization problem that arise when considering species whose evolution is better represented by a network rather than a tree. More specifically, we consider the problem of computing phylogenetic diversity relative to a split system on a collection of species of size n. We show that for general split systems this problem is NP-hard. In addition we provide some efficient algorithms for some special classes of split systems, in particular presenting an optimal O(n) time algorithm for phylogenetic trees and an O(n log n + nk) time algorithm for choosing an optimal subset of size k relative to a circular split system.     

On the foundations of biological systematics

Summary The foundations of systematics lie in ontology, not in subjective epistemology. Systems and their elements should be distinguished from classes; only the latter are constructed from similarities. The term classification should be restricted to ordering into classes; ordering according to systematic relations may be called systematization.The theory of organization levels portrays the real world as a hierarchy of open systems, from energy quanta to ecosystems; followingHartmann these systems as extended in time are considered the primary units of reality. Organization levels should be distinguished from levels of differentiation within each organization level.Certain biological systems, such as species, continue to be misinterpreted as classes, particularly by logicians unfamiliar with modern biological theory. Replacement of Aristotelian definitions of species by polytypic definitions achieves nothing, because species are individual systems which can be defined from an ontological viewpoint only as wholes. The dispute whether classes (universals) are real per se or only in individuals is of no scientific importance; irrespective of which view is taken, any ordering of physical objects into classes constitutes an hypothesis about the structure of the real world.The distinction between essential and contingent characters (attributes) is relevant only to classification. There are no universal rules for evaluating characters for purposes of systematization. Character statements do not form separate linear sequences. The search for unit characters in an absolute sense is futile. All real characters are reducible to relations and are in principle measurable, although there are limitations on the extent to which this can be presently achieved.The concept of the sexual (biological) species is fundamental to theories of biosystematics. Sexual species may be defined as lineages consisting at any given time of series of populations between which genetic exchange can occur and delimited in time by two successive processes of speciation. Linnaean nomenclature needs modification; in its traditional form it is appropriate only to non-truncated hierarchies, whereas real phylogenies (lineages of species) form truncated hierarchies. In consequence of the distinction between systematization and classification it is concluded that, while taxa may be classified into age classes or evolutionary grades, their limits as taxa (systematic units) can be no different in either case. Classification into evolutionary grades remains an imprecise endeavour, since no general measure of evolutionary differentiation has been devised.The spatial and temporal extent of ecosystems, the postulated basic units of ecosystematics, remains unclarified. Nevertheless there are grounds for expecting progress in this field as the energetic relations between organisms become better understood. Biotic communities are not abstract classes, but systematic units. Physiognomic classification should not be confused with systematization of plant communities; both approaches contribute to an understanding of vegetational structure.     

Ecological and trophic differentiation of fungal diversity in Aksu-Zhabagly Nature Reserve (Kazakhstan)

Two fungal-like organisms (class Oomycetes) and 263 species of fungi from 111 genera, 42 families, 23 orders, and 7 classes have been found on the territory of Aksu-Zhabagly Nature Reserve. Twenty-two species are found for the first time. The vast majority of species are parasitic (202 species), 56 species belong to saprotrophs, and 7 to symbiotrophs. Classes Taphrinomycetes, Urediniomycetes, and Ustilaginomycetes are represented exclusively by parasites. There have been found 21 saprotrophic, 27 parasitic, and 4 symbiotrophic species in the class Ascomycetes. The most numerous group in the class Basidiomycetes is the group of humus saprotrophs; it contains 15 species. Groups of litter saprotrophs and parasites contain four species each, symbiotrophic species have three species, coprotrophs and xylotrophs have two species each, and litter and humus saprotrophs have one species each. Anamorphic fungi are represented by 91 parasitic and 11 saprotrophic species. In comparison with closely located Sairam-Ugam National Park and the Karatau Nature Reserve, the mycobiota of Aksu-Zhabagly is characterized by a significant number of species in the classes Basidiomycetes, Urediniomycetes, Hyphomycetes, and Coelomycetes. Thirty-one species are common to these protected areas. The most numerous group is parasites.     

Bacterial flagella and type III secretion systems

Certain classes of pathogenic bacteria secrete virulence proteins in a Sec-independent manner, by a mechanism known as type III secretion. The main body of the export apparatus specific for virulence proteins is identified as a needle complex, which has a similar structural organization to flagella. The two structures share several proteins with highly homologous amino acid sequences. Even where the sequence identity is low among flagellar proteins from various species, the physico-chemical properties of each protein remain homologous. Therefore, by comparing the physico-chemical properties of unidentified proteins, it is possible to find homologs among type III secretion systems.     

Direct and indirect interactions co‐determine species composition in nurse plant systems

Facilitation by nurse plants plays an important role in determining community composition in severe environments. Although the unidirectional effect of nurses on beneficiary species has received considerable research interest, nurse‐mediated interactions among beneficiary species (so‐called indirect interactions) are less known. Consequently, community composition in nurse plant systems is generally considered as a simple consequence of the facilitative effect of the nurse even though beneficiary species may significantly contribute to community assembly and modulate the direct nurse effects on the community. In an observational study we assessed nurse effects and nurse‐mediated beneficiary interactions in two contrasting nurse plant systems in dry environments using a newly developed framework. We quantified plant–plant interaction intensity using the relative interaction index (RII) at the community and species level for three Retama sphaerocarpa shrub size‐classes in a semiarid shrubland and four Arenaria tetraquetra cushion plant communities differing in aspect and elevation in dry alpine gravel habitats. The observed RII was split into nurse and beneficiary effects, and related to individual mass, species frequency and abundance using generalized linear mixed models. Results showed predominantly positive nurse effects and negative beneficiary interactions. The effect size of nurse plants, however, was significantly higher than the effect size of beneficiary species in both systems. Individual plant mass and abundance of species was dependent on the combined effects of nurse and beneficiary species whereas species occurrence was related to nurse effects only. Despite evident differences, the semiarid and alpine nurse plant systems showed strong functional parallelisms. We found interdependence between the effects of nurse and beneficiary species on beneficiary plant assemblages emphasizing their combined role on community assembly in both systems. Our results highlight the need to consider indirect interactions to understand fully plant community dynamics.     

Vascular plant diversity in eastern Asia and North America: historical and ecological explanations

Taxonomic diversity of vascular plants (ferns, gymnosperms and angiosperms) was compared between eastern Asia and North America. Eastern Asia has significantly higher species richness in all three classes but the difference was greatest in ferns and least in angiosperms. Differences in taxonomic treatments between the two continents are not likely contributors to these patterns. The relationship of regional to global species richness across the three plant classes suggested that diversity patterns were relatively homogeneous at three taxonomic levels. Thus, differences in species richness are established at the family level and are therefore relatively old. The previously noted fact that eastern Asia has a higher proportion of primitive taxa was shown by analyses both among and within plant classes. Diversity patterns across three taxonomic levels (i.e. family, genus and species) of the three classes may reflect the relative historical positions of the two continents (following continental drift) to the centre(s) of their origin, neighbouring land masses, differential speciation/extinction rates, and switches in dominance levels associated with climate change (including glaciation), as well as reproductive/dispersal mechanisms of the three plant classes.