An Old World hummingbird from the Oligocene: a new fossil from Polish Carpathians

A near-complete, partially articulated skeleton of a hummingbird was recently found in the menilite shales of the Polish Flysh Carpathians. The specimen is dated to the Early Oligocene (Rupelian, approx. 31 Myr). It shares derived characters with extant hummingbirds and plesiomorphic characters with swifts. Its long, thin beak and short and stout humerus and ulna are typical for hummingbirds, but the coracoid resembles that observed in swifts. The osteology of the specimen is generally similar to that of the hummingbird described from the Early Tertiary of Germany but because it clearly differs in some characters from the German hummingbird Eurotrochilus inexpectatus, it is described as a new species of the same genus.     

Microbial respiration within a floodplain aquifer of a large gravel-bed river

1. Aerobic respiration, productivity and the carbon turnover rate of microbial biofilms were determined at hyporheic and phreatic sites in the Kalispell Valley alluvial aquifer along a transect extending 3.9 km laterally from the main channel of the Flathead River, a sixth order river in Montana (U.S.A.). The effect of experimentally increasing bioavailable organic carbon (acetate) on the respiration rate of biofilms in this carbon‐poor [dissolved organic carbon (DOC) < 2 mg L^?1] aquifer was also measured. 2. Chambers containing natural substratum were placed in‐situ and allowed to colonise for 20 weeks. After 4, 12 and 20 weeks, they were taken to the laboratory where oxygen flux was measured in a computer‐controlled, flow‐through respirometry system. 3. Respiration ranged from 0.01 to 0.33 mg O₂ dm^?3 h^?1 across sites, with means ranging from 0.10 to 0.17 mg O₂ dm^?3 h^?1. Productivity estimates ranged from 0.18 to 0.32 mg C dm^?3 day^?1 (mean 0.25, SE 0.03). The total organic carbon (TOC) of the microbial biofilms ranged from 18.2 to 29.7 mg C dm^?3. Turnover rate ranged from 3.2 to 5.6 year^?1 with a mean of 4.2 year^?1. 4. At the hyporheic site very close to the river, respiration did not significantly increase when samples were supplemented with labile carbon. Respiration increased with increasing DOC addition at hyporheic sites more distant from the river, suggesting a carbon‐limitation gradient within the hyporheic zone. Microbes at the phreatic site did not respond to increasing DOC addition, suggesting that the phreatic biofilm is adapted to low carbon availability. 5. Comparing the volume of the alluvial aquifer (about 0.7 km³) to that of the river benthic sediments (to 0.25 m depth, which amounts to about 1.6 × 10^?4 km³) within the Flathead Valley, leads to the conclusion that interstitial microbial productivity is orders of magnitude greater than benthic productivity. Alluvial aquifers are often voluminous and microbial production is an enormous component of ecosystem production in rivers such as the Flathead.     

High resilience of aquatic community to a 100-year flood in a gravel-bed river

Our understanding of ecosystem responses to exceedingly large rare flood events is currently limited. We report the resilience of aquatic community to a 100-year record-high flood, and how it varies depending on levels of water pollution, in a fourth-order gravel-bed river in northern Japan. We used data on riparian landscape structure, channel morphology, and community structure of aquatic fauna, which were collected in sites with and without effluent before (1 month–3 years) and after (10 months) the flood. Carbon and nitrogen stable isotope ratios of consumers and basal resources were measured only before (1 year) the flood. We observed aquatic food web with introduced rainbow trout (Oncorhynchus mykiss) as the top predator, with variable relative contributions of basal resources and their pathways to the rainbow trout, under the effects of water pollution. Biofilm-originating dietary carbon became the more dominant resource, with a slightly shorter food-chain length in the polluted sites. The flood led to a loss of riparian forest and a substantial increase in the proportion of exposed gravel bars (5–24%). While the average river-bed elevation changed a little, the localized scours of river bed down to?>?2 m were observed with lateral shifts of channel thalweg. Despite the landscape-level physical and structural changes of ecosystem, aquatic community showed a remarkably high resilience exhibiting negligible changes in abundance, except in the polluted site where only fish abundance showed a slight decrease. This study suggests that the abundance of aquatic organisms in gravel-bed rivers is resilient to a flood of unprecedented magnitude in recent history.

     

Effects of floods versus low flows on invertebrates in a New Zealand gravel-bed river

1. Floods and low flows are hydrological events that influence river ecosystems, but few studies have compared their relative importance in structuring invertebrate communities. Invertebrates were sampled in riffles and runs at eight sites along 40 km of a New Zealand gravel‐bed river every 1–3 months over 2.5 years, during which time a number of large flood and low flow events occurred. Flows were high in winter and spring, and low in summer and autumn. Four flow‐related variables were calculated from hydrological data: flow on the day of sampling (Q_sample), maximum and minimum flow between successive samples (Q_max and Q_min, respectively), and the number of days since the last bed‐moving flood (N_days). 2. The invertebrate community was summarised by relative densities of the 19 most abundant taxa and four biotic metrics [total abundance, taxon richness, the number of Ephemeroptera, Plecoptera and Trichoptera taxa (i.e. EPT richness), and per cent EPT]. Invertebrate density fluctuated greatly, and was high in summer and autumn, and low during winter and spring. Stepwise multiple regression (SMR) analysis was used to investigate relationships between the invertebrate community and season, flow, habitat and water temperature. 3. Seasonal variables were included in almost 50% of the SMR models, while flow‐related variables were included in >75% of models. Densities of many taxa were negatively correlated to Q_min and Q_max, and positively correlated to N_days, suggesting that while high flows reduced invertebrate densities, densities recovered with increasing time following a flood. Although season and flow were confounded in this study, many of the taxa analysed display little seasonal variation in abundance, suggesting that flow‐related variables were more important in structuring communities than seasonal changes in density associated with life‐cycles. 4. Five discrete flood and low flow events were identified and changes to invertebrate communities before and after these events examined. Invertebrate densities decreased more commonly after floods than after low flows, and there was a significant positive relationship between the number of taxa showing reductions in density and flood magnitude. Densities of most invertebrates either remained unchanged, or increased after low flow events, except for four taxa whose densities declined after a very long period (up to 9 months) of low flow. This decline was attributed to autogenic sloughing of thick periphyton communities and subsequent loss of habitat for these taxa. 5. Invertebrate communities changed more after floods and the degree of change was proportional to flood magnitude. Community similarity increased with increasing time since the last disturbance, suggesting that the longer stable flows lasted, the less the community changed. These results suggest that invertebrate communities in the Waipara River were controlled by both floods and low flows, but that the relative effects of floods were greater than even extended periods of extreme low flow. 6. Hydraulic conditions in riffles and runs were measured throughout the study. Riffles had consistently faster velocities, but were shallower and narrower than runs at all measured flows. Invertebrate density in riffles was expressed as a percentage of total density and regressed against the flow‐related variables to see whether invertebrate locations changed according to flow. Significant negative relationships were observed between the per cent density of common taxa in riffles and Q_sample, Q_max and Q_min. This result suggests either that these animals actively drifted into areas of faster velocity during low flows, or that their densities within riffles increased as the width of these habitats declined.     

Origin and resedimentation of rhodoliths in the Late Paleocene flysch of the Polish Outer Carpathians

This study analyses the rhodolith-bearing deposits in the largest and most rhodolith-rich outcrop of the Polish Outer Carpathian flysch, located in the Silesian Nappe, at the village of Melsztyn. The rhodoliths and sparse associated biota occur as resedimented components in a deep-marine succession of siliciclastic conglomerates and coarse-grained sandstones, deposited by high-density turbidity currents and debris flows. The sediment was derived from a fan-delta system located at the southern margin of the Silesian flysch basin. Stratigraphic data indicate that the succession represents the Upper Istebna Sandstone deposited during the Late Paleocene. The rhodoliths are composed mostly of coralline red algae with seven genera and eight species representing the family Sporolithaceae and the subfamilies Mastophoroideae and Melobesioideae. Rhodoliths show sub-spheroidal and sub-ellipsoidal shapes with encrusting, warty and lumpy growth forms. Lumpy growth forms show massive inner arrangements, whereas the encrusting growth forms are usually made of thin thalli and show more loosely packed inner arrangements. The rhodoliths grew on a moderately mobile siliciclastic substrate in a shallow-marine environment with a low net sedimentation rate. It is inferred that the growth of rhodoliths was favored during a relative sea-level rise. During the subsequent sea-level fall, the rhodoliths and associated siliciclastic deposits were resedimented by gravity flows into the deep-sea setting. The analyzed deposits, like other Paleocene–Eocene deposits of the Polish Outer Carpathians, provide no evidence of coeval widespread shallow-marine carbonate sedimentation along the margins of the Outer Carpathian flysch basins.     

New data on crinoid assemblages from the oldest sedimentary rocks of the Polish Outer Carpathians (Jurassic-Cretaceous)

Crinoids (Crinoidea) preserved in the so-called Cieszyn Beds (Tithonian-Hauterivian; southern Poland) are relatively numerous, especially in some levels, but not highly diversified. They are absent in the Lower Cieszyn Shale (Tithonian) and the Upper Cieszyn Shale (Valanginian-Hauterivian). The Lower Cieszyn Limestone (Tithonian) yielded crinoid remains classified as Isocrinus cf. amblyscalaris (Thurmann) and Isocrinida indet. In the Upper Cieszyn Limestone (Berriasian) crinoids are much more numerous and diversified. The following taxa are recorded: Isocrinus? annulatus (Roemer), Balanocrinus subteres (Münster), B. cf. smithi Hess and Gale, and Hemicrinus sp. The presence of specimens resembling Isocrinus amblyscalaris (Thurmann) in the Tithonian strata is surprising since the last occurrence of this taxon was reported from the Kimmeridgian. The Lower Cieszyn Limestone crinoidal assemblage is dominated by isocrinids (Isocrinida). This probably reflects the much shallower sedimentary environment of these sediments compared to that of the Upper Cieszyn Limestone, where excepting isocrinids, hemicrinids (Hemicrinidae, Cyrtocrinida) typical for deep marine environments were found. It is consistent with the analytical results from the foraminiferal assemblages, among which the benthic forms known from shelfal and paralic epicontinental environments first dominated, and then were supplanted by deep-sea taxa at the turn of the Jurassic and Cretaceous.     

Macroinvertebrate community structure along gradients of hydraulic and sedimentary conditions in a large gravel-bed river

1. The spatial distribution of macroinvertebrate species was examined in relation to hydraulic and sedimentary conditions in a large gravel‐bed river, the Fraser River, Canada. Mean annual discharge in the Fraser River is 2900 m3 s?1 and annual flood discharge, due to snowmelt in May and June, averages 8760 m3 s?1.
2. Invertebrates were sampled from four water depths (0.2, 0.5, 1.5, 3.0 m) at various levels of discharge that together captured the spatial and temporal variability of the physical habitat. Several hydraulic (near‐bed shear velocity, Boundary Reynolds number, turbulence intensity, depth‐averaged velocity, Froude number, Reynolds number) and substratum variables (mean grain size, Trask's sorting coefficient, Nikuradse's roughness, percentage of fine sediment, and Shields entrainment function) were measured for each sample of macroinvertebrates. Concentrations of fine and coarse particulate organic matter were also assessed.
3. The physical habitat was characterized by a major gradient of hydraulic conditions that corresponded positively with increasing water depth and accounted for 52% of the total variation in the habitat data. Substratum conditions and the concentration of organic matter explained 24% of the total variation in the habitat data.
4. The distribution of invertebrates was correlated significantly with hydraulic variables and suggests that hydraulic conditions represent a major physical gradient along which the benthic community is organized. The distribution of organic matter and substratum texture were also important for some species. The spatial distribution of most species reflected morphological and trophic suitability to particular habitat conditions.
5. Hydraulic stress associated with foraging and maintaining position, as well as organic matter retention in coarse substrata, are probable mechanisms affecting the spatial distribution of macroinvertebrates.     

The effect of in-stream gravel extraction in a pre-alpine gravel-bed river on hyporheic invertebrate community

We investigated the effect of in-stream gravel extraction in a pre-alpine gravel-bed river on hyporheic invertebrate community, together with changes in the hyporheic geomorphology, physico-chemistry and biofilm activity. Hyporheic invertebrates were collected, together with environmental data, on seven sampling occasions from June 2004 to May 2005, at two river reaches—at the site of in-stream gravel extraction and at a site 2.5 km upstream. The hyporheic samples were taken from the river bed and from the gravel bars extending laterally from the stream channel. The invertebrate community was dominated by insect larvae (occasional hyporheos), followed by meiofauna (permanent hyporheos). Stygobionts were present at low species richness and in low densities. Gravel extraction from the stream channel led to changes in the patterns of water exchange between surface and subsurface and changes in the sediment composition at the site. Immediate reductions in density and taxonomic richness of invertebrates were observed, together with changes in their community composition. The hyporheic invertebrate community in the river recovered relatively fast (in 2.5 months) by means of density and taxonomic richness, while by means of community composition invertebrates needed 5–7 months to recover. The impact of fine sediments (<0.1 mm) on biofilm activity measured through ETS activity and hyporheic invertebrate density and taxonomic richness was strongly confirmed in this study.     

The first insight into hunting and feeding behaviour of the Eurasian lynx in the Western Carpathians

Mammal Research - In Europe, the Eurasian lynx (Lynx lynx) has suffered from intensive persecution due to competition with hunters, resulting in its extermination in the late 19th–early 20th...     

Multivariate analysis of theSenecio nemorensis group (Compositae) in the Carpathians with a new species from the East Carpathians

Six species and subspecies of theS. nemorensis group from the Carpathians are recognized here, based on morphometric analyses (cluster and discriminant analyses). A new speciesS. ucranicus Hodálová and a new hybridS. ×dominii Hodálová=S. germanicus Wallr.×S. ucranicus Hodálová, occurring in the East Carpathians and the eastern part of the South Carpathians, are described. The vicarious nature ofS. hercynicus Herborg subsp.hercynicus, S. dacicus Hodálová etMarhold andS. ucranicus Hodálová in the Carpathians is documented. A key to theS. nemorensis group in the Carpathians as well as toS. nemorensis L. s. str. is presented.     

Differences in amounts of pools and riffles between upper and lower reaches of a fully sedimented dam in a mountain gravel-bed river

To understand the extent of changes in the habitat structure of macroinvertebrates due to channel degradation, the amount of pools and riffles and bed materials were determined in upper and lower reaches of a fully sedimented dam in a mountain gravel-bed river. Pools occurred more frequently and individual pools were longer in the lower reach than in the upper reaches; the total length of pools in the former was four times than in the latter. In contrast, individual riffles in the upper reaches were longer than and the total length double that in the lower reach. The main bed materials in the upper reaches were moderate-sized cobbles and boulders (diameter 10–40 cm), which generated moderately steep and long riffles. In the lower reach, these materials were scarce and the main bed materials were large boulders (>50 cm) and bedrock, which generated steep and short riffles; finer materials (<10 cm) dominated in pools and runs. The reduced total length of riffles in the lower reach was partly associated with the steepening of individual riffles, which may be due to the shortage of moderate-sized cobbles and boulders. Macroinvertebrate biomass at reach scale, which was estimated based on the total lengths of pools and riffles, was more than two to four times in the upper reaches than in the lower reach.     

Alchemilla suavis,a new species from the Western Carpathians

Zusammenfassung Als neue Art der GattungAlchemilla L. Subser.Hirsutae H.Lindb. wirdA. suavis A.Plocek aus den West-Karpaten beschrieben. Sie wird mit ähnlichen Arten verglichen.     

Nuclear interactions in a heterokaryon: insight from the model Neurospora tetrasperma

A heterokaryon is a tissue type composed of cells containing genetically different nuclei. Although heterokaryosis is commonly found in nature, an understanding of the evolutionary implications of this phenomenon is largely lacking. Here, we use the filamentous ascomycete Neurospora tetrasperma to study the interplay between nuclei in heterokaryons across vegetative and sexual developmental stages. This fungus harbours nuclei of two opposite mating types (mat A and mat a) in the same cell and is thereby self-fertile. We used pyrosequencing of mat-linked SNPs of three heterokaryons to demonstrate that the nuclear ratio is consistently biased for mat A-nuclei during mycelial growth (mean mat A/mat a ratio 87%), but evens out during sexual development (ratio ranging from 40 to 57%). Furthermore, we investigated the association between nuclear ratio and expression of alleles of mat-linked genes and found that expression is coregulated to obtain a tissue-specific bias in expression ratio: during mycelial extension, we found a strong bias in expression for mat A-linked genes, that was independent of nuclear ratio, whereas at the sexual stage we found an expression bias for genes of the mat a nuclei. Taken together, our data indicate that nuclei cooperate to optimize the fitness of the heterokaryon, via both altering their nuclear ratios and coregulation genes expressed in the different nuclei.     

Altitudinal changes in composition and structure of mountain-temperate vegetation: a case study from the Western Carpathians

Changes in composition and structure of plant communities in relation tothe soil and snow cover variation were analyzed along an altitudinal transect(1150–1750 m) from the mountain-temperate forests to a woodyshrub community and alpine meadows on Mt Velký Gápel', Slovakia.The soils below the treeline (1510 m) had a more developedorganic layer above the mineral substratum. Generally, soil depth decreased asthe altitude increased, although the maximum values were recognized at a middlealtitude in a beech stand. Snow was redistributed by westerly winds from theridgeline down to the upper forest margin. Mean snow depth decreased withaltitude up to almost snow-free sites around the summit. In the 48 plots at 16sites we recorded 118 taxa including 6 tree, 7 shrub, 18 grass, 42 herb, 5fern,25 moss and 15 lichen species. The species diversity showed no distinctrelationship to altitude but declined with canopy consolidation. The TWINSPANfloristic classification distinguished five groups of community typescharacterised by different dominants, and a further three clusters of samplesfrom transition zones. Horizontal compositional heterogeneity increased inareaswhere trees were aggregated and tree basal area was smaller. Vegetationcomposition became more patchy at open-canopy Acerpseudoplatanus–Abies alba mixed forest at 1150 m,in Picea abies forest limit 1470 m, andin Pinus mugo krummholz at 1590 m. Speciesturnover of the entire transect was 6.1 half-changes as estimated by DCA.Despite this heterogeneity, none of the 15 elevational bands had significantaggregation of species' limits. Vegetation varied continuously, with individualspecies overlapping in transition zones delimited by dominant taxa. Thecoincident aggregation of up-slope and down-slope boundaries was found at abelt1430–1510 m. This discrete ecotone corresponds to a shiftfrom the closed coniferous forest to P. mugo krummholz.Thesecond inherent up-slope boundary aggregation indicated the P.mugo krummholz – alpine meadow vegetation transition at1700 m. Spatial analysis (K-function) of eight forest plots(0.12 ha each) showed that at lower elevation, adult trees of thebroad-leaf forest were closer to a random arrangement while at higherelevation,trees of evergreen coniferous stands became aggregated toward the forest limitwith the highest intensity from 2 to 4 m. Altitudinal gradient andrelated factors explained 35% of the variance in vegetation data.Canonical correspondence analysis also showed that main vegetation changesabovethe treeline area were associated with the topographic pattern of pine shrubsand snow cover.     

用河流生物指数评价秦淮河上游水质的研究

1999～2001年用D-形网半定量法采集了南京秦淮河上游21个样点的大型底栖无脊椎动物。12个底栖生物指数值的频数分布分析、Pearson相关分析和敏感性检测表明,总分类单元数、ET分类单元数、香农多样性指数、水生昆虫分类单元数和优势分类单元％最适合于秦淮河上游水质生物评价。采用5、3、1生物指数记分法统一量纲。提出了河流生物指数(RBI)概念,其值即为累加上述5个指数后的总分值,建立了河流生物指数评价秦淮河水质的标准,并对21个样点的水质进行重新评价,效果较单项生物指数如香农多样性指数评价结果更接近实际情况。     

Comparative studies of brain evolution: a critical insight from the Chiroptera

Comparative studies of brain size have a long history and contributed much to our understanding of the evolution and function of the brain and its parts. Recently, bats have been used increasingly as model organisms for such studies because of their large number of species, high diversity of life-history strategies, and a comparatively detailed knowledge of their neuroanatomy. Here, we draw attention to inherent problems of comparative brain size studies, highlighting limitations but also suggesting alternative approaches. We argue that the complexity and diversity of neurological tasks that the brain and its functional regions (subdivisions) must solve cannot be explained by a single or few variables representing selective pressures. Using an example we show that by adding a single relevant variable, morphological adaptation to foraging strategy, to a previous analysis a correlation between brain and testes mass disappears completely and changes entirely the interpretation of the study. Future studies should not only look for novel determinants of brain size but also include known correlates in order to add to our current knowledge. We believe that comparisons at more detailed anatomical, taxonomic, and geographical levels will continue to contribute to our understanding of the function and evolution of mammalian brains.     

Development of a regional macroinvertebrate index for large river bioassessment

Large river bioassessment protocols lag far behind those of wadeable streams and often rely on fish assemblages of individual rivers. We developed a regional macroinvertebrate index and assessed relative condition of six large river tributaries to the upper Mississippi and Ohio rivers, Midwest USA. In 2004 and 2005, benthic macroinvertebrates, water chemistry, and habitat data were collected from randomly selected sites on each of the St. Croix, Wisconsin, Minnesota, Scioto, Wabash, and Illinois rivers. We first identified the human disturbance gradient using principal components analysis (PCA) of abiotic data. From the PCA, least disturbed sites showed strong separation from stressed sites along a gradient contrasting high water clarity, canopy cover, habitat scores, and plant-based substrates at one end and higher conductivity and nutrient concentrations at the other. Evaluation of 97 benthic metrics identified those with good range, responsiveness, and relative scope of impairment, as well as redundancies with other metrics. The final index was composed of Diptera taxa richness, EPT taxa richness, Coleoptera taxa richness, percent oligochaete and leech taxa, percent collector-filterer individuals, predator taxa richness, percent burrower taxa, tolerant taxa richness, and percent facultative individuals. Each of the selected metrics was scored using upper and lower thresholds based on all sites, and averaging across the nine metric scores, we obtained the Non-wadeable Macroinvertebrate Assemblage Condition Index (NMACI). The NMACI showed a strong response to disturbance using a validation data set and was highly correlated with non-metric multidimensional scaling (NMDS) ordination axes of benthic taxa. The cumulative distribution function of index scores for each river showed qualitative differences in condition among rivers. NMACI scores were highest for the federally protected St. Croix River and lowest for the Illinois River. Other rivers were intermediate and generally reflected the mixture of land use types within individual basins. Use of regional reference sites, though setting a high level of expectation, provides a valuable frame of reference for the potential of large river benthic communities that will aid management and restoration efforts.     

Fishery-induced changes in a marine ecosystem: insight from models of the Gulf of Thailand

Two mass-balance trophic models are constructed to describe the Gulf of Thailand ecosystem (10–50 m depth): one model pertains to the initial phase of fisheries development, and the other to when the resources were severely depleted. The two phases are compared, and changes brought about by fishing discussed. A dynamic simulation model, Ecosim, is then used successfully to reproduce the 1980 state of the fishery based on the 1963 model and the development in catches. In addition the 1980 model is used to predict how the ecosystem groups may bounce back following marked reduction in fishing pressure. Finally, the 1963 model is used to study alternative scenarios for how the fisheries development could take place, notably the effect of exploiting only the resources of larger species. The study validates that the Ecosim model can be used to predict ecosystem level changes following changes in fishing pressure, therefore fishing induced changes can to a large extent explain the changes in ecosystem pools and fluxes observed over time.