EMILIANIA HUXLEYI (PRYMNESIOPHYCEAE): NITROGEN‐METABOLISM GENES AND THEIR EXPRESSION IN RESPONSE TO EXTERNAL NITROGEN SOURCES1

The availability and composition of dissolved nitrogen in ocean waters are factors that influence species composition in natural phytoplankton communities. The same factors affect the ratio of organic to inorganic carbon incorporation in calcifying species, such as the coccolithophore Emiliania huxleyi (Lohman) W. W. Hay et H. Mohler. E. huxleyi has been shown to thrive on various nitrogen sources, including dissolved organic nitrogen. Nevertheless, assimilation of dissolved nitrogen under nitrogen‐replete and ‐limited conditions is not well understood in this ecologically important species. In this study, the complete amino acid sequences for three functional genes involved in nitrogen metabolism in E. huxleyi were identified: a putative formamidase, a glutamine synthetase (GSII family), and assimilatory nitrate reductase. Expression patterns of the three enzymes in cells grown on inorganic as well as organic nitrogen sources indicated reduced expression levels of nitrate reductase when cells were grown on NH₄⁺ and a reduced expression level of the putative formamidase when growth was on NO₃^?. The data reported here suggest the presence of a nitrogen preference hierarchy in E. huxleyi. In addition, the gene encoding for a phosphate repressible phosphate permease was more highly expressed in cells growing on formamide than in cells growing on inorganic nitrogen sources. This finding suggests a coupling between phosphate and nitrogen metabolism, which might give this species a competitive advantage in nutrient‐depleted environments. The potential of using expression of genes investigated here as indicators of specific nitrogen‐metabolism strategies of E. huxleyi in natural populations of phytoplankton is discussed.     

Whole‐plant and organ‐level nitrogen isotope discrimination indicates modification of partitioning of assimilation,fluxes and allocation of nitrogen in knockout lines of Arabidopsis thaliana

The nitrogen isotope composition (δ¹⁵N) of plants has potential to provide time‐integrated information on nitrogen uptake, assimilation and allocation. Here, we take advantage of existing T‐DNA and γ‐ray mutant lines of Arabidopsis thaliana to modify whole‐plant and organ‐level nitrogen isotope composition. Nitrate reductase 2 (nia2), nitrate reductase 1 (nia1) and nitrate transporter (nrt2) mutant lines and the Col‐0 wild type were grown hydroponically under steady‐state NO₃^– conditions at either 100 or 1000 μM NO₃^– for 35 days. There were no significant effects on whole‐plant discrimination and growth in the assimilatory mutants (nia2 and nia1). Pronounced root vs leaf differences in δ¹⁵N, however, indicated that nia2 had an increased proportion of nitrogen assimilation of NO₃^– in leaves while nia1 had an increased proportion of assimilation in roots. These observations are consistent with reported ratios of nia1 and nia2 gene expression levels in leaves and roots. Greater whole‐plant discrimination in nrt2 indicated an increase in efflux of unassimilated NO₃^– back to the rooting medium. This phenotype was associated with an overall reduction in NO₃^– uptake, assimilation and decreased partitioning of NO₃^– assimilation to the leaves, presumably because of decreased symplastic intercellular movement of NO₃^– in the root. Although the results were more varied than expected, they are interpretable within the context of expected mechanisms of whole‐plant and organ‐level nitrogen isotope discrimination that indicate variation in nitrogen fluxes, assimilation and allocation between lines.     

Effects of non-steady-state iron limitation on nitrogen assimilatory enzymes in the marine diatom thalassiosira weissflogii (BACILLARIOPHYCEAE)

Since the recognition of iron‐limited high nitrate (or nutrient) low chlorophyll (HNLC) regions of the ocean, low iron availability has been hypothesized to limit the assimilation of nitrate by diatoms. To determine the influence of non‐steady‐state iron availability on nitrogen assimilatory enzymes, cultures of Thalassiosira weissflogii (Grunow) Fryxell et Hasle were grown under iron‐limited and iron‐replete conditions using artificial seawater medium. Iron‐limited cultures suffered from decreased efficiency of PSII as indicated by the DCMU‐induced variable fluorescence signal (F_v/F_m). Under iron‐replete conditions, in vitro nitrate reductase (NR) activity was rate limiting to nitrogen assimilation and in vitro nitrite reductase (NiR) activity was 50‐fold higher. Under iron limitation, cultures excreted up to 100 fmol NO₂^?·cell^?1·d^?1 (about 10% of incorporated N) and NiR activities declined by 50‐fold while internal NO₂^? pools remained relatively constant. Activities of both NR and NiR remained in excess of nitrogen incorporation rates throughout iron‐limited growth. One possible explanation is that the supply of photosynthetically derived reductant to NiR may be responsible for the limitation of nitrogen assimilation at the NO₂^? reduction step. Urease activity showed no response to iron limitation. Carbon:nitrogen ratios were equivalent in both iron conditions, indicating that, relative to carbon, nitrogen was assimilated at similar rates whether iron was limiting growth or not. We hypothesize that, diatoms in HNLC regions are not deficient in their ability to assimilate nitrate when they are iron limited. Rather, it appears that diatoms are limited in their ability to process photons within the photosynthetic electron transport chain which results in nitrite reduction becoming the rate‐limiting step in nitrogenassimilation.     

Effect of NO3- supply on N metabolism of potato plants (Solanum tuberosum L.) with special focus on the tubers

The response of the tubers to NO₃^– was studied in comparison to the other organs of Solanum tuberosum var. Sava, with special focus on: (a) whether tubers are capable of primary N assimilation; (b) whether N assimilation is stimulated by NO₃^–; and (c) whether primary N assimilation in tubers is important for tuber growth. NO₃^– reduction via nitrate reductase (NR; EC 1.6.6.1) and NH₄⁺ assimilation via glutamine synthetase (GS; EC 6.3.1.2) occurred predominantly in the shoots, but up to 20% was contributed by the tubers under low‐NO₃^– conditions. NR activation was highest in tubers (up to 90%) and declined in all organs with increasing NO₃^– supply. NR and GS activity responded with a decline in tubers and roots as opposed to an increase in the shoots. This corresponded to relative organ growth: growth of tubers and roots was stimulated relative to that of shoots at a limiting NO₃^– supply. Absolute growth of all organs was stimulated by NO₃^–, whereas tuber number declined. The concentration of N compounds increased with NO₃^– supply in all organs: NO₃^– increased most dramatically in the shoots (81‐fold), free amino acids most markedly in the tubers (three‐fold). The amount of patatin and of the 22 kDa protein complex in the tuber reached a minimum when the amount of Rubisco in the shoot reached maximum as a response to NO₃^– supply. Tuber sucrose and starch increased by 40%, whereas glucose and fructose declined two‐fold as plant N status increased. It is concluded that tubers are potentially N autotroph organs with capacity for de novo synthesis of amino acids. Primary N assimilation in tubers, however, declines with increasing NO₃^– supply and is not of major importance for tuber growth.     

Influence of elevated CO2 and nitrogen nutrition on photosynthesis and nitrate photo-assimilation in maize (Zea mays L.)

Measurements of CO₂ and O₂ gas exchange and chlorophyll a fluorescence were used to test the hypothesis that elevated atmospheric CO₂ inhibits nitrate (NO₃ ^– ) photo‐assimilation in the C₄ plant, maize (Zea mays L.). The assimilatory quotient (AQ), the ratio of net CO₂ assimilation to net O₂ evolution, decreases as NO₃ ^– photo‐assimilation increases so that the difference in AQ between the ammonium‐ and nitrate‐fed plants (ΔAQ) provided an in planta estimate of NO₃ ^– photo‐assimilation. In fully expanded maize leaves, NO₃ ^– photo‐assimilation was detectable only under high light and was not affected by CO₂ treatments. Furthermore, CO₂ assimilation and O₂ evolution were higher under NO₃ ^– than ammonia (NH₄⁺) regardless of CO₂ levels. In conclusion, NO₃ ^– photo‐assimilation in maize primarily occurred at high light when reducing equivalents were presumably not limiting. Nitrate photo‐assimilation enhanced C₄ photosynthesis, and in contrast to C₃ plants, elevated CO₂ did not inhibit foliar NO₃^– photo‐assimilation.     

Nitrogen balance for wheat canopies (Triticum aestivum cv. Veery 10) grown under elevated and ambient CO2 concentrations

We examined the hypothesis that elevated CO₂ concentration would increase NO₃^– absorption and assimilation using intact wheat canopies (Triticum aestivum cv. Veery 10). Nitrate consumption, the sum of plant absorption and nitrogen loss, was continuously monitored for 23 d following germination under two CO₂ concentrations (360 and 1000 μmol mol^–1 CO₂) and two root zone NO₃^– concentrations (100 and 1000 mmol m³ NO₃^–). The plants were grown at high density (1780 m^–2) in a 28 m³ controlled environment chamber using solution culture techniques. Wheat responded to 1000 μmol mol^–1 CO₂ by increasing carbon allocation to root biomass production. Elevated CO₂ also increased root zone NO₃^– consumption, but most of this increase did not result in higher biomass nitrogen. Rather, nitrogen loss accounted for the greatest part of the difference in NO₃^– consumption between the elevated and ambient [CO₂] treatments. The total amount of NO₃^–-N absorbed by roots or the amount of NO₃^–-N assimilated per unit area did not significantly differ between elevated and ambient [CO₂] treatments. Instead, specific leaf organic nitrogen content declined, and NO₃^– accumulated in canopies growing under 1000 μmol mol^–1 CO₂. Our results indicated that 1000 μmol mol^–1 CO₂ diminished NO₃^– assimilation. If NO₃^– assimilation were impaired by high [CO₂], then this offers an explanation for why organic nitrogen contents are often observed to decline in elevated [CO₂] environments.     

Oxygen consumption during leaf nitrate assimilation in a C3 and C4 plant: the role of mitochondrial respiration

Measurements of net fluxes of CO₂ and O₂ from leaves and chlorophyll a fluorescence were used to determine the role of mitochondrial respiration during nitrate (NO₃^–) assimilation in both a C₃ (wheat) and a C₄ (maize) plant. Changes in the assimilatory quotient (net CO₂ consumed over net O₂ evolved) when the nitrogen source was shifted from NO₃^– to NH₄⁺ (ΔAQ) provided a measure of shoot NO₃^– assimilation. According to this measure, elevated CO₂ inhibited NO₃^– assimilation in wheat but not maize. Net O₂ exchange under ambient CO₂ concentrations increased in wheat plants receiving NO₃^– instead of NH₄⁺, but gross O₂ evolution from the photosynthetic apparatus (J_O2) was insensitive to nitrogen source. Therefore, O₂ consumption within wheat photosynthetic tissue (ΔΟ₂), the difference between J_O2 and net O₂ exchange, decreased during NO₃^– assimilation. In maize, NO₃^– assimilation was insensitive to changes in intercellular CO₂ concentration (C_i); nonetheless, ΔΟ₂ at low C_i values was significantly higher in NO₃^–‐fed than in NH₄⁺‐fed plants. Changes in O₂ consumption during NO₃^– assimilation may involve one or more of the following processes: (a) Mehler ascorbate peroxidase (MAP) reactions; (b) photorespiration; or (c) mitochondrial respiration. The data presented here indicates that in wheat, the last process, mitochondrial respiration, is decreased during NO₃^– assimilation. In maize, NO₃^– assimilation appears to stimulate mitochondrial respiration when photosynthetic rates are limiting.     

Nitrogen isotope composition of tomato (Lycopersicon esculentum Mill. cv. T-5) grown under ammonium or nitrate nutrition

Studies that quantify plant δ¹⁵N often assume that fractionation during nitrogen uptake and intra-plant variation in δ¹⁵N are minimal. We tested both assumptions by growing tomato (Lycopersicon esculetum Mill. cv. T-5) at NH₄⁺ or NO^?₃ concentrations typical of those found in the soil. Fractionation did not occur with uptake; whole-plant δ¹⁵N was not significantly different from source δ¹⁵ N for plants grown on either nitrogen form. No intra-plant variation in δ¹⁵N was observed for plants grown with NH⁺₄. In contrast. δ¹⁵N of leaves was as much as 5.8% greater than that of roots for plants grown with NO^?₃. The contrasting patterns of intra-plant variation are probably caused by different assimilation patterns. NH⁺₄ is assimilated immediately in the root, so organic nitrogen in the shoot and root is the product of a single assimilation event. NO^?₃ assimilation can occur in shoots and roots. Fractionation during assimilation caused the δ¹⁵N of NO^?₃ to become enriched relative to organic nitrogen; the δ¹⁵N of NO^?₃ was 11.1 and 12.9% greater than the δ¹⁵N of organic nitrogen in leaves and roots, respectively. Leaf δ¹⁵N may therefore be greater than that of roots because the NO^?₃ available for assimilation in leaves originates from a NO^?₃ pool that was previously exposed to nitrate assimilation in the root.     

Nitrate photo-assimilation in tomato leaves under short-term exposure to elevated carbon dioxide and low oxygen

The role of photorespiration in the foliar assimilation of nitrate (NO₃^–) and carbon dioxide (CO₂) was investigated by measuring net CO₂ assimilation, net oxygen (O₂) evolution, and chlorophyll fluorescence in tomato leaves (Lycopersicon esculentum). The plants were grown under ambient CO₂ with ammonium nitrate (NH₄NO₃) as the nitrogen source, and then exposed to a CO₂ concentration of either 360 or 700 µmol mol^?1, an O₂ concentration of 21 or 2%, and either NO₃^– or NH₄⁺ as the sole nitrogen source. The elevated CO₂ concentration stimulated net CO₂ assimilation under 21% O₂ for both nitrogen treatments, but not under 2% O₂. Under ambient CO₂ and O₂ conditions (i.e. 360 µmol mol^?1 CO₂, 21% O₂), plants that received NO₃^– had 11–13% higher rates of net O₂ evolution and electron transport rate (estimated from chlorophyll fluorescence) than plants that received NH₄⁺. Differences in net O₂ evolution and electron transport rate due to the nitrogen source were not observed at the elevated CO₂ concentration for the 21% O₂ treatment or at either CO₂ level for the 2% O₂ treatment. The assimilatory quotient (AQ) from gas exchange, the ratio of net CO₂ assimilation to net O₂ evolution, indicated more NO₃^– assimilation under ambient CO₂ and O₂ conditions than under the other treatments. When the AQ was derived from gross O₂ evolution rates estimated from chlorophyll fluorescence, no differences could be detected between the nitrogen treatments. The results suggest that short‐term exposure to elevated atmospheric CO₂ decreases NO₃^– assimilation in tomato, and that photorespiration may help to support NO₃^– assimilation.     

Correlation between nitrogenase and glutamine synthetase expression in the cyanobacterium Anabaena cylindrical

Distribution pattern and levels of nitrogenase (EC 1.7.99.2) and glutamine synthetase (GS, EC 6.3.1.2) were studied in N₂-, NO₃^? and NH₄⁺ grown Anabaena cylindrica (CCAP 1403/2a) using immunogold electron microscopy. In N₂- and NO₃^? grown cultures, heterocysts were formed and nitrogenase activity was present. The nitrogenase antigen appeared within the heterocysts only and showed an even distribution. The level of nitrogenase protein in the heterocysts was identical with both nitrogen sources. In NO₃^? grown cells the 30% reduction in the nitrogenase activity was due to a corresponding decrease in the heterocyst frequency and not to a repressed nitrogenase synthesis. In NH₄^? grown cells, the nitrogenase activity was almost zero and new heterocysts were formed to a very low extent. The heterocysts found showed practically no nitrogenase protein throughout the cytoplasm, although some label occurred at the periphery of the heterocyst. This demonstrates that heterocyst differentiation and nitrogenase expression are not necessarily correlated and that while NH₄⁺ caused repression of both heterocyst and nitrogenase synthesis, NO₃^? caused inhibition of heterocyst differentiation only. The glutamine synthetase protein label was found throughout the vegetative cells and the heterocysts of all three cultures. The relative level of the GS antigen varied in the heterocysts depending on the nitrogen source, whereas the GS level was similar in all vegetative cells. In N₂- and NO₃⁺ grown cells, where nitrogenase was expressed, the GS level was ca 100% higher in the heterocysts compared to vegetative cells. In NH₄⁺ grown cells, where nitrogenase was repressed, the GS level was similar in the two cell types. The enhanced level of GS expressed in heterocysts of N₂ and NO₃^? grown cultures apparently is related to nitrogenase expression and has a role in assimilation of N₂derived ammonia.     

Changes in nitrogen assimilation, metabolism, and growth in transgenic rice plants expressing a fungal NADP(H)-dependent glutamate dehydrogenase (gdhA)

In plants, glutamine synthetase (GS) is the enzyme that is mainly responsible for the assimilation of ammonium. Conversely, in microorganisms such as bacteria and Ascomycota, NADP(H)-dependent glutamate dehydrogenase (GDH) and GS both have important roles in ammonium assimilation. Here, we report the changes in nitrogen assimilation, metabolism, growth, and grain yield of rice plants caused by an ectopic expression of NADP(H)-GDH (gdhA) from the fungus Aspergillus niger in the cytoplasm. An investigation of the kinetic properties of purified recombinant protein showed that the fungal gdhA had 5.4–10.2 times higher V _max value and 15.9–43.1 times higher K _m value for NH₄ ⁺, compared with corresponding values for rice cytosolic GS as reported in the literature. These results suggested that the introduction of fungal GDH into rice could modify its ammonium assimilation pathway. We therefore expressed gdhA in the cytoplasm of rice plants. NADP(H)-GDH activities in the gdhA-transgenic lines were markedly higher than those in a control line. Tracer experiments by feeding with ¹⁵NH₄ ⁺ showed that the introduced gdhA, together with the endogenous GS, directly assimilated NH₄ ⁺ absorbed from the roots. Furthermore, in comparison with the control line, the transgenic lines showed an increase in dry weight and nitrogen content when sufficient nitrogen was present, but did not do so under low-nitrogen conditions. Under field condition, the transgenic line examined showed a significant increase in grain yield in comparison with the control line. These results suggest that the introduction of fungal gdhA into rice plants could lead to better growth and higher grain yield by enhancing the assimilation of ammonium.     

Influence of nitrogen source and concentration on nitrogen isotopic discrimination in two barley genotypes (Hordeum vulgare L.)

The occurrence of nitrogen isotope discrimination with absorption and assimilation of nitrate (NO₃^–) and ammonium (NH₄⁺) was investigated using two genotypes of barley, Hordeum vulgare L. cv. Steptoe and Az12 : Az70, the latter of which lacks the characterized nitrate reductase isozymes. Plants were grown under two situations: a closed system with limited nitrogen or an open system with unlimited nitrogen, to elucidate the conditions and processes that influence discrimination. There was no discrimination observed for Az12 : Az70 when supplied with limited nitrogen. Discrimination was observed for Steptoe seedlings at high external NO₃^– concentrations, but not with low NO₃^– when assimilation is probably rapid and complete. The same pattern was observed for Steptoe when NH₄⁺ was supplied; indicating that for both nitrogen forms discrimination is dependent upon the presence of the assimilatory enzyme and the external concentration. The implications of this study are that both internal (assimilatory enzyme distribution) and external (source concentration) factors may have a larger impact on tissue δ ¹⁵N than the form of nitrogen utilized. This suggests that tissue δ ¹⁵N may not always be a reliable indicator of a plant's integrated nitrogen nutrition.     

Mitochondrial Respiration Can Support NO(3) and NO(2) Reduction during Photosynthesis : Interactions between Photosynthesis, Respiration, and N Assimilation in the N-Limited Green Alga Selenastrum minutum

Mass spectrometric analysis shows that assimilation of inorganic nitrogen (NH₄⁺, NO₂⁻, NO₃⁻) by N-limited cells of Selenastrum minutum (Naeg.) Collins results in a stimulation of tricarboxylic acid cycle (TCA cycle) CO₂ release in both the light and dark. In a previous study we have shown that TCA cycle reductant generated during NH₄⁺ assimilation is oxidized via the cytochrome electron transport chain, resulting in an increase in respiratory O₂ consumption during photosynthesis (HG Weger, DG Birch, IR Elrifi, DH Turpin [1988] Plant Physiol 86: 688-692). NO₃⁻ and NO₂⁻ assimilation resulted in a larger stimulation of TCA cycle CO₂ release than did NH₄⁺, but a much smaller stimulation of mitochondrial O₂ consumption. NH₄⁺ assimilation was the same in the light and dark and insensitive to DCMU, but was 82% inhibited by anaerobiosis in both the light and dark. NO₃⁻ and NO₂⁻ assimilation rates were maximal in the light, but assimilation could proceed at substantial rates in the light in the presence of DCMU and in the dark. Unlike NH₄⁺, NO₃⁻ and NO₂⁻ assimilation were relatively insensitive to anaerobiosis. These results indicated that operation of the mitochondrial electron transport chain was not required to maintain TCA cycle activity during NO₃⁻ and NO₂⁻ assimilation, suggesting an alternative sink for TCA cycle generated reductant. Evaluation of changes in gross O₂ consumption during NO₃⁻ and NO₂⁻ assimilation suggest that TCA cycle reductant was exported to the chloroplast during photosynthesis and used to support NO₃⁻ and NO₂⁻ reduction.     

Nutritional stress effects under different nitrogen sources on the genes in microalga Isochrysis zhangjiangensis and the assistance of Alteromonas macleodii in releasing the stress of amino acid deficiency

The expressions of nine nitrogen assimilation‐associated genes, NRT2, NAR1, NIA2, NIR, GLN2, GLSF, GSN1, GDH, and AAT2, in the microalga Isochrysis zhangjiangensis were investigated to unveil the effects of limitations of various nitrogen sources (NaNO₃, NH₄Cl, NaNO₂, and an amino acid mixture) on the microalgae. The results demonstrated that the NRT2, NAR1, GLN2, GSN1, and AAT2 genes were highly expressed in lipid‐rich microalgae under inorganic nitrogen‐deficient conditions and they decreased after nitrogen resupply. Significant increases in the expressions of NAR1, GLN2, and GLSF were found in nitrate‐depleted microalgae, whereas significant increases in the expressions of NRT2, NAR1, GLN2, and GSN1 were found in nitrite‐depleted microalgae. Significant increases in the expressions of only NRT2 and GSN1 were found in ammonium‐depleted microalgae (P < 0.05). Except for the NRT2, other genes were expressed at lower levels under amino acid‐deficient conditions compared with amino acid‐sufficient controls. The expression of the NIA2 gene decreased in nitrogen‐depleted microalgae regardless of the initial nitrogen source. However, the results of fatty acid analyses showed that the features of fatty acid profiles followed a similar mode, in which the percentage compositions of C16:0 and C18:1Δ⁹ increased in nitrogen‐depleted cells and that of C16:1Δ⁹, C18:3Δ^9,12,15, C18:4Δ^6,9,12,15, and C18:5Δ^3,6,9,12,15 decreased, regardless of the type of nitrogen source applied. It was also found that the epiphytic bacterium Alteromonas macleodii played a particularly important role in releasing microalgae from the stress of amino acid deficiency. These findings also provide a foundation for regulating microalgal lipid production through manipulation of the nitrogen assimilation‐associated genes.