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Sarcopenia is a complex polygenic disease, and its molecular mechanism is still unclear. Whole lean body mass (WLBM) is a heritable trait predicting sarcopenia. To identify genomic loci underlying, we performed a whole‐exome sequencing (WES) of WLBM variation with high sequencing depth (more than 40*) in 101 Chinese subjects. We then replicated in the major findings in the large‐scale UK Biobank (UKB) cohort (N = 217,822) for WLBM. The results of four single‐nucleotide polymorphisms (SNPs) were significant both in the discovery stage and replication stage: SNP rs740681 (discovery p = 1.66 × 10–6, replication p = .05), rs2272303 (discovery p = 3.20 × 10–4, replication p = 3.10 × 10–4), rs11170413 (discovery p = 3.99 × 10–4, replication p = 2.90 × 10–4), and rs2272302 (discovery p = 9.13 × 10–4, replication p = 3.10 × 10–4). We combined p values of the significant SNPs. Functional annotations highlighted two candidate genes, including FZR1 and SOAT2, that may exert pleiotropic effects to the development of body mass. Our findings provide useful insights that further enhance our understanding of genetic interplay in sarcopenia.  相似文献   

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  总被引:3,自引:0,他引:3  
Rice is one of the most important crops in the world, and is widely studied as a model for cereal ge-nomics because of its small genome size (about 430 Mbp), and its colinearity at the sequence level with limited regions of other cereal genomes. In addition, there are a large number of rice databases document-ing molecular markers, genome sequences, EST se-quences and trait mutants[1—4]. Functional genomic studies of rice are increasing with the availability of the complete genome sequence. …  相似文献   

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Over 3000 rice plants with T-DNA carrying a Ds element were constructed by Agrobacterium tumefaciens mediation. Using inverse PCR methodology, 590 unique right flanking sequences of T-DNA (Ds) were retrieved from independent transformants and classified into six main types on the basis of the origin of filler DNA between the right border of T-DNA and flanking sequence of rice genome. Type I sequences were the most common and showed canonical integration that T-DNA right border was followed by rice genome sequence with or without filler DNA of no more than 50 bp, while type II sequences displayed a vector-genome combination that T-DNA right border was followed by a vector fragment and then connected with rice genome sequence. The location and distribution of 340 type I and II flanking sequences on the rice chromosome were determined using BLAST analysis. The 340 Ds insertions at an average interval of 0.8 megabase (Mb) constructed a basic framework of Ds starter points on whole rice chromosomes. The frequency of T-DNA (Ds) inserted into the exons of predicted genes on chromosome one was 21%. Knowledge of T-DNA (Ds) locations on chromosomes will prove to be a useful resource for isolating rice genes by Ds transposon tagging as these Ds insertions can be used as starting lines for further mutagenesis.  相似文献   

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The clinical translation of next‐generation sequencing has created a paradigm shift in the diagnostic assessment of individuals with suspected rare genetic diseases. Whole‐exome sequencing (WES) simultaneously examines the majority of the coding portion of the genome and is rapidly becoming accepted as an efficient alternative to clinical Sanger sequencing for diagnosing genetically heterogeneous disorders. Among reports of the clinical and diagnostic utility of WES, few studies to date have directly compared its concordance to Sanger sequencing, which is considered the clinical “gold standard”. We performed a direct comparison of 391 coding and noncoding polymorphisms and variants of unknown significance identified by clinical Sanger sequencing to the WES results of 26 patients. Of the 150 well‐covered coding variants identified by Sanger sequencing, 146 (97.3%) were also reported by WES. Nine genes were excluded from the comparison due to consistently low coverage in WES, which might be attributed to the use of older exome capture kits. We performed confirmatory Sanger sequencing of discordant variants; including five variants with discordant bases and four with discordant zygosity. Confirmatory Sanger sequencing supported the original Sanger report for three of the five discordant bases, one was shown to be a false positive supporting the WES data, and one result differed from both the Sanger and WES data. Two of the discordant zygosity results supported Sanger and the other two supported WES data. We report high concordance for well‐covered coding variants, supporting the use of WES as a screening tool for heterogeneous disorders, and recommend the use of supplementary Sanger sequencing for poorly‐covered genes when the clinical suspicion is high. Importantly, despite remaining difficulties with achieving complete coverage of the whole exome, 10 (38.5%) of the 26 compared patients were diagnosed through WES.  相似文献   

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  总被引:3,自引:0,他引:3  
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应用简单重复序列(SSR)标记方法对辽宁省近15年的14个大面积种植的水稻品种进行遗传多样性分析的结果表明,17对引物共产生43个位点,其中多态性位点17个,平均每对SSR引物检测到2.53个,占位点总数的39.53%。用Nei’s公式计算水稻品种间的遗传距离,并以算术平均非加权聚类(UPGMA)法进行聚类分析并结合系谱分析结果表明,辽宁省近15年的水稻主栽品种遗传多样性不够丰富,多数品种间的亲缘关系较近,欲进一步提高产量还需拓宽遗传基础。  相似文献   

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秋稻品种‘Dular’广亲和基因效应的RFLP分析   总被引:4,自引:1,他引:4  
利用RFLP标记对秋稻品种Dular的三交(南京11//Dular/2533)的F2群体与灿粳品种的测交F1进行了单株带鉴定,并对广亲和性的表达进行分析。结果表明:与第6染色体上标记RG213连锁的广亲和基因S5^n效应较大;不同位点广亲和基因具有明显的累加效应;位点内的互作导致了粳型配子的部分败育,同时还存在位点间的互作。  相似文献   

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水稻株形对纹枯病抗性的影响   总被引:8,自引:0,他引:8  
利用240份源于珍汕97B/明恢63的重组自交系水稻(Oryza sativa L.)群体,连续2年调查纹枯病病级与水稻生育期、株高和叶片长宽等18个株形性状的关系。对株形性状与纹枯病病级进行了偏相关分析。实验结果,只有植株松紧度与病级表型偏相关两年中都达到了显著或极显著水平,倒2叶基角、穗层整齐度等8个性状与病级之间的偏相关只有一年达显著或极显著水平。结合构建的分子标记遗传连锁图谱,对各性状进行QTL定位。在抗纹枯病QTL相近区间仅检测到控制分蘖角、植株松紧度和倒2叶基角的QTLs,未发现其余株形性状QTLs与抗纹枯病QTLs分布在同一染色体上。结果表明,水稻对纹枯病的抗性主要是由本身抗性基因控制,株形对纹枯病抗性表达的影响主要是间接影响,即通过改变田间小气候而影响发病程度。抗纹枯病育种在累加主效抗纹枯病QTLs的同时,也要注重选择不利于纹枯病发展的株形性状。  相似文献   

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杂草稻落粒粳的抗逆境特性研究   总被引:27,自引:0,他引:27  
杂草稻落粒粳(Oryza sativa)发生在我国辽宁丹东.落粒粳植株明显高于当地大多数栽培品种,颖果呈中长型,成熟后容易掉粒;果壳稻草色或黄间黑灰色,小穗无芒或有芒,芒长4~12 cm;颖果千粒重235 g,种皮桔红色.落粒粳种子在13~38 ℃条件下的发芽率均大于88%,水层2.5~10 cm处理,落粒粳植株干重减少50%~69%.在幼苗期,落粒粳对无芒稗的各项影响因子均明显大于化感潜力品种I-kung-pao,表明落粒粳无化感作用.落粒粳可以忍耐0.5%的盐碱.  相似文献   

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APⅣ是一份多卵水稻突变体.多卵是由"5-2-1"型、"5-3-0"型和"6-2-0"型等蓼型变异型发育途径发育而来的.多卵都能分别受精,因而使APⅣ出现多胚现象.本结果表明,APⅣ中约有一半胚囊的发育属于蓼型变异型,变异型胚囊发育过程中存在多种异常的核行为,这些核行为受着微管骨架组织变化的影响,显示微管骨架组织在胚囊核行为中起着一定的作用.文中观察到的较为明显的异常情况有:"5-2-1"型四核胚囊存在特殊的核运动,四核胚囊刚形成时,珠孔和合点两端各有2个核,但不久合点端有1个核移向珠孔端,形成珠孔端有3个核、合点端只有1个核的特殊四核胚囊.这种四核胚囊在合点端的1个核移向珠孔端期间,合点端2个姐妹核之间存在特殊的长条状微管束,这种微管可能是促进二核有效分开的重要组成部分."5-3-0"型和"6-2-0"型各个时期胚囊内的核行为和核周围的微管组织骨架与同期正常蓼型的胚囊均存在着差异."5-3-0"型二核胚囊1个核位于珠孔端,另1个核近珠孔端,二核呈纵向排列与胚囊纵轴平行,核之间存在随机排列的微管束,因此可能导致二核无法像正常二核胚囊的核一样移向两端."6-2-0"型功能大孢子、二核胚囊和四核胚囊等时期胚囊核均位于珠孔端或近珠孔端,而在核周则存在复杂的网络状微管."6-2-0"型八核胚囊早期除2个近胚囊中央的核存在朝向合点极的长微管(可能有助于推动核向胚囊中央移动)外,其他核周围的微管组织都呈复杂的网络状.  相似文献   

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花粉发育的转录组研究进展   总被引:2,自引:1,他引:2  
魏丽勤  王台 《植物学通报》2007,24(3):311-318
在受精过程中花粉通过其极性生长的花粉管将精细胞运送到胚囊启动双受精,除了在有性生殖过程中的重要作用外,花粉及其极性生长的花粉管也是研究植物生长发育的重要模式材料。随着模式植物拟南芥和水稻基因组测序的完成,在基因组水平上揭示花粉发育以及花粉管极性生长的分子基础已成为可能。经过最近几年的研究已初步明确了花粉转录组特征。本文主要讨论了拟南芥花粉转录组学的研究进展,以期帮助读者对花粉发育的研究有全面了解。  相似文献   

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采用加硅与缺硅营养液培养的方法,首次研究证明硅能提高水稻(Oryza sativa L.)叶片抗紫外线胁迫的能力.结果表明,在紫外胁迫条件下,缺硅水稻叶片表面出现明显的棕色伤害斑点,而加硅叶片未出现伤害症状.硅在水稻表皮细胞壁及细胞内部的积累明显促进了紫外吸收物质在表皮细胞中的聚集,使表皮中可溶性酚类物质含量提高17%,不溶性紫外吸收物质的含量增加65%左右.荧光显微镜观察表明,在表皮细胞外壁或胞内沉积的水合二氧化硅固体中包含着大量不溶性的酚类化合物,它们与可溶性酚类物质一起在叶片的上、下表皮细胞中形成了吸收紫外线的屏障.  相似文献   

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利用240份源于珍汕97B/明恢63的重组自交系水稻(Oryza sativa L.)群体,连续2年调查纹枯病病级与水稻生育期、株高和叶片长宽等18个株形性状的关系.对株形性状与纹枯病病级进行了偏相关分析.实验结果,只有植株松紧度与病级表型偏相关两年中都达到了显著或极显著水平,倒2叶基角、穗层整齐度等8个性状与病级之间的偏相关只有一年达显著或极显著水平.结合构建的分子标记遗传连锁图谱,对各性状进行QTL定位.在抗纹枯病QTL相近区间仅检测到控制分蘖角、植株松紧度和倒2叶基角的QTLS,未发现其余株形性状QTLs与抗纹枯病QTLs分布在同一染色体上.结果表明,水稻对纹枯病的抗性主要是由本身抗性基因控制,株形对纹枯病抗性表达的影响主要是间接影响,即通过改变田间小气候而影响发病程度.抗纹枯病育种在累加主效抗纹枯病QTLs的同时,也要注重选择不利于纹枯病发展的株形性状.  相似文献   

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APⅣ是一份多卵水稻突变体。多卵是由“5-2-1”型、“5-3-0”型和“6-2-0”型等蓼型变异型发育途径发育而来的。多卵都能分别受精,因而使APⅣ出现多胚现象。本结果表明,APⅣ中约有一半胚囊的发育属于蓼型变异型,变异型胚囊发育过程中存在多种异常的核行为,这些核行为受着微管骨架组织变化的影响,显示微管骨架组织在胚囊核行为中起着一定的作用。文中观察到的较为明显的异常情况有“5-2-1”型四核胚囊存在特殊的核运动,四核胚囊刚形成时,珠孔和合点两端各有2个核,但不久合点端有1个核移向珠孔端,形成珠孔端有3个核、合点端只有1个核的特殊四核胚囊。这种四核胚囊在合点端的1个核移向珠孔端期间,合点端2个姐妹核之间存在特殊的长条状微管束,这种微管可能是促进二核有效分开的重要组成部分。“5-3-0”型和“6-2-0”型各个时期胚囊内的核行为和核周围的微管组织骨架与同期正常蓼型的胚囊均存在着差异。“5-3-0”型二核胚囊1个核位于珠孔端,另1个核近珠孔端,二核呈纵向排列与胚囊纵轴平行,核之间存在随机排列的微管束,因此可能导致二核无法像正常二核胚囊的核一样移向两端。“6-2-0”型功能大孢子、二核胚囊和四核胚囊等时期胚囊核均位于珠孔端或近珠孔端,而在核周则存在复杂的网络状微管。“6-2-0”型八核胚  相似文献   

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