Water for small‐scale biogas digesters in sub‐Saharan Africa

Biogas could provide a more sustainable energy source than wood fuels for rural households in sub‐Saharan African. However, functioning of biogas digesters can be limited in areas of low water availability. The water required is approximately 50 dm³ day^?1 for each cow and 10 dm³ day^?1 for each pig providing manure to the digester, or 25 (±6) dm³ day^?1 for each person in the household, using a digester volume of 1.3 (±0.3) m³ capita^?1. Here, we consider the potential of domestic water recycling, rainwater harvesting, and aquaculture to supply the water needed for digestion in different countries of sub‐Saharan Africa. Domestic water recycling was found to be important in every country but was usually insufficient to meet the requirements of the digester, with households in 72% of countries need to collect additional water. Rooftop rainwater harvesting also has an important role, iron roofs being more effective than thatched roofs at collecting water. However, even with an iron roof, the size of roof commonly found in sub‐Saharan Africa (15 to 40 m²) is too small to collect sufficient water, requiring an extra area (in m²) for each person of (R/100) (where R is the rainfall in mm). If there is a local market for fish, stocking a pond with tilapia, fed on plankton growing on bioslurry from the digester, could provide an important source of additional income and hold the water required by the digester. In areas where rainfall is low and seasonal, the fishpond might be stocked only in the rainy season, allowing the pond to be covered during the dry period to reduce evaporation. If evaporative losses (E in mm) exceed rainfall, an extra catchment area is needed to maintain the water level in the pond, equivalent to approximately (1.5 × ((E?R)/R)) m² for each person in the household.     

Considerations for stakeholder engagement and COVID‐19 related clinical trials’ conduct in sub‐Saharan Africa

The aim of this study is to determine how stakeholder engagement can be adapted for the conduct of COVID‐19‐related clinical trials in sub‐Saharan Africa. Nine essential stakeholder engagement practices were reviewed: formative research; stakeholder engagement plan; communications and issues management plan; protocol development; informed consent process; standard of prevention for vaccine research and standard of care for treatment research; policies on trial‐related physical, psychological, financial, and/or social harms; trial accrual, follow‐up, exit trial closure and results dissemination; and post‐trial access to trial products or procedures. The norms, values, and practices of collectivist societies in Sub‐Saharan Africa and the low research literacy pose challenges to the conduct of clinical trials. Civil‐society organizations, members of community advisory boards and ethics committees, young persons, COVID‐19 survivors, researchers, government, and the private sector are assets for the implementation and translation of COVID‐19 related clinical trials. Adapting ethics guidelines to the socio‐cultural context of the region can facilitate achieving the aim of stakeholder engagement.     

Climate anomalies affect annual survival rates of swifts wintering in sub‐Saharan Africa

Several species of migratory swifts breed in the Western Palearctic, but they differ in reproductive traits and nonbreeding areas explored in Africa. We examined survival and recapture probabilities of two species of swifts by capture–mark–recapture data collected in northern Italy (Pallid Swift Apus pallidus in Carmagnola, Turin, and Common Swift Apus apus in Guiglia, Modena) in the breeding season (May–July). Apparent survival rates were relatively high (>71%), comparable to other studies of European swifts, but showed marked annual variations. We used geolocators to establish the exact wintering areas of birds breeding in our study colonies. Common Swifts explored the Sahel zone during migration and spent the winter in SE Africa, while the Pallid Swifts remained in the Sahel zone for a longer time, shifting locations southeast down to Cameroun and Nigeria later in winter. These movements followed the seasonal rains from north to south (October to December). In both species, we found large yearly differences in survival probabilities related to different climatic indices. In the Pallid Swift, wintering in Western Africa, the Sahel rainfall index best explained survival, with driest seasons associated with reduced survival. In the Common Swift, wintering in SE Africa, the El Niño–Southern Oscillation (ENSO) cycle performed significantly better than Sahel rainfall or North Atlantic Oscillation (NAO). Extreme events and precipitation anomalies in Eastern Africa during La Niña events resulted in reduced survival probabilities in Common Swifts. Our study shows that the two species of swifts have similar average annual survival, but their survival varies between years and is strongly affected by different climatic drivers associated with their respective wintering areas. This finding could suggest important ecological diversification that should be taken into account when comparing survival and area use of similar species that migrate between temperate breeding areas and tropical wintering areas.     

Lessons from the Ebola epidemics and their applications for COVID‐19 pandemic response in sub‐Saharan Africa

COVID‐19, caused by a novel coronavirus named SARS‐CoV‐2, was identified in December 2019, in Wuhan, China. It was first confirmed in sub‐Saharan Africa in Nigeria on 27 February 2020 and has since spread quickly to all sub‐Saharan African countries, causing more than 111,309 confirmed cases and 2,498 deaths as of 03 June 2020. The lessons learned during the recent Ebola virus disease (EVD) outbreaks in some sub‐Saharan African countries were expected to shape and influence the region’s responses to COVID‐19 pandemic. However, some of the challenges associated with the management of the EVD outbreaks persist and create obstacles for the effective management of the COVID‐19 pandemic. This article describes the commonalities between the EVD epidemics and COVID‐19 pandemic, with a view to draw on lessons learned to effectively tackle the ongoing pandemic. Key successes, failures and lessons learned from previous EVD outbreaks are discussed. Recommendations on how these lessons can be translated to strengthen the COVID‐19 response in sub‐Saharan Africa are provided.     

Hotspots of climate change impacts in sub‐Saharan Africa and implications for adaptation and development

Development efforts for poverty reduction and food security in sub‐Saharan Africa will have to consider future climate change impacts. Large uncertainties in climate change impact assessments do not necessarily complicate, but can inform development strategies. The design of development strategies will need to consider the likelihood, strength, and interaction of climate change impacts across biosphere properties. We here explore the spread of climate change impact projections and develop a composite impact measure to identify hotspots of climate change impacts, addressing likelihood and strength of impacts. Overlapping impacts in different biosphere properties (e.g. flooding, yields) will not only claim additional capacity to respond, but will also narrow the options to respond and develop. Regions with severest projected climate change impacts often coincide with regions of high population density and poverty rates. Science and policy need to propose ways of preparing these areas for development under climate change impacts.     

Analysis of climate signals in the crop yield record of sub‐Saharan Africa

Food security and agriculture productivity assessments in sub‐Saharan Africa (SSA) require a better understanding of how climate and other drivers influence regional crop yields. In this paper, our objective was to identify the climate signal in the realized yields of maize, sorghum, and groundnut in SSA. We explored the relation between crop yields and scale‐compatible climate data for the 1962–2014 period using Random Forest, a diagnostic machine learning technique. We found that improved agricultural technology and country fixed effects are three times more important than climate variables for explaining changes in crop yields in SSA. We also found that increasing temperatures reduced yields for all three crops in the temperature range observed in SSA, while precipitation increased yields up to a level roughly matching crop evapotranspiration. Crop yields exhibited both linear and nonlinear responses to temperature and precipitation, respectively. For maize, technology steadily increased yields by about 1% (13 kg/ha) per year while increasing temperatures decreased yields by 0.8% (10 kg/ha) per °C. This study demonstrates that although we should expect increases in future crop yields due to improving technology, the potential yields could be progressively reduced due to warmer and drier climates.     

Fire in sub‐Saharan Africa: The fuel,cure and connectivity hypothesis

Aim

Past analyses of satellite‐based fire activity in tropical savannas support the intermediate fire–productivity hypothesis (IFP), which posits a close correlation with estimates of total net primary productivity in drier savannas and declines towards the extremes. However, these analyses ignore the distinct roles played by herbaceous and woody vegetation in fire ignition and spread. We hypothesize that, as herbaceous vegetation provides the primary fuel, fire activity in African savannas is asymptotically correlated with herbaceous production. Conversely, woody production affects fires indirectly through effects on herbaceous production and its connectivity. In contrast to the IFP, we propose the fuel, cure and connectivity (FCC) conceptual model for tropical fire activity. The FCC model makes explicit the distinct role of herbaceous and woody fuels, avoiding the confounding interpretation of the role of total production, while providing opportunities to quantify fuel curability, effects of trees on herbaceous fuel growth and connectivity, and human management.

Location

Sub‐Saharan Africa (SSA).

Time period

2003–2015.

Major taxa studied

Woody and herbaceous vegetation.

Methods

We used boosted regression tree analysis to test competing models explaining fire activity: (a) aggregate fuel loads; and (b) partitioned woody and herbaceous fuel loads; both derived from MODIS leaf area index.

Results

Herbaceous fuel load was consistently most influential, providing more explanatory power than overall biomass in fire activity. Fuel curability rated second, then human population density (HPD), and woody biomass was least important. We observed an asymptotic relationship between herbaceous fuel load and fire activity consistent with the FCC model; trees promote fires at low densites but suppress fires at higher densities; fires were rare in wetter regions, emphasizing the need for fuel to cure; and fires were concentrated in areas of low human population, underscoring the crucial role of land management.

Conclusions

The proposed FCC framework provides a more nuanced understanding of fire activity in tropical ecosystems, where herbaceous biomass is the key determinant of fire activity.     

mtDNA variability in two Bantu‐speaking populations (Shona and Hutu) from Eastern Africa: Implications for peopling and migration patterns in sub‐Saharan Africa

In this study, we report novel data on mitochondrial DNA in two of the largest eastern Bantu‐speaking populations, the Shona from Zimbabwe and the Hutu from Rwanda. The goal is to evaluate the genetic relationships of these two ethnic groups with other Bantu‐speaking populations. Moreover, by comparing our data with those from other Niger‐Congo speaking populations, we aim to clarify some aspects of evolutionary and demographic processes accompanying the spread of Bantu languages in sub‐Saharan Africa and to test if patterns of genetic variation fit with models of population expansion based on linguistic and archeological data. The results indicate that the Shona and Hutu are closely related to the other Bantu‐speaking populations. However, there are some differences in haplogroup composition between the two populations, mainly due to different genetic contributions from neighboring populations. This result is confirmed by estimates of migration rates which show high levels of gene flow not only between pairs of Bantu‐speaking populations, but also between Bantu and non‐Bantu speakers. The observed pattern of genetic variability (high genetic homogeneity and high levels of gene flow) supports a linguistic model suggesting a gradual spread of Bantu‐speakers, with strong interactions between the different lines of Bantu‐speaker descent, and is also in agreement with recent archeological findings. In conclusion, our data emphasize the role that population admixture has played at different times and to varying degrees in the dispersal of Bantu languages. Am J Phys Anthropol, 2009. © 2009 Wiley‐Liss, Inc.     

Impacts of intensifying or expanding cereal cropping in sub‐Saharan Africa on greenhouse gas emissions and food security

Cropping is responsible for substantial emissions of greenhouse gasses (GHGs) worldwide through the use of fertilizers and through expansion of agricultural land and associated carbon losses. Especially in sub‐Saharan Africa (SSA), GHG emissions from these processes might increase steeply in coming decades, due to tripling demand for food until 2050 to match the steep population growth. This study assesses the impact of achieving cereal self‐sufficiency by the year 2050 for 10 SSA countries on GHG emissions related to different scenarios of increasing cereal production, ranging from intensifying production to agricultural area expansion. We also assessed different nutrient management variants in the intensification. Our analysis revealed that irrespective of intensification or extensification, GHG emissions of the 10 countries jointly are at least 50% higher in 2050 than in 2015. Intensification will come, depending on the nutrient use efficiency achieved, with large increases in nutrient inputs and associated GHG emissions. However, matching food demand through conversion of forest and grasslands to cereal area likely results in much higher GHG emissions. Moreover, many countries lack enough suitable land for cereal expansion to match food demand. In addition, we analysed the uncertainty in our GHG estimates and found that it is caused primarily by uncertainty in the IPCC Tier 1 coefficient for direct N₂O emissions, and by the agronomic nitrogen use efficiency (N‐AE). In conclusion, intensification scenarios are clearly superior to expansion scenarios in terms of climate change mitigation, but only if current N‐AE is increased to levels commonly achieved in, for example, the United States, and which have been demonstrated to be feasible in some locations in SSA. As such, intensifying cereal production with good agronomy and nutrient management is essential to moderate inevitable increases in GHG emissions. Sustainably increasing crop production in SSA is therefore a daunting challenge in the coming decades.     

Environmental drivers of freshwater macrophyte diversity and community composition in calcareous warm‐water rivers of America and Africa

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The contrasting effects of short‐ and long‐term habitat drainage on the population dynamics of freshwater turtles in a human‐dominated landscape

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‘It is an entrustment’: Broad consent for genomic research and biobanks in sub‐Saharan Africa

In recent years, there has been an increase in the establishment of biobanks for genetic and genomic studies around the globe. One example of this is the Human Heredity and Health in Africa Initiative (H3Africa), which has established biobanks in the sub‐region to facilitate future indigenous genomic studies. The concept of ‘broad consent’ has been proposed as a mechanism to enable potential research participants in biobanks to give permission for their samples to be used in future research studies. However, questions remain about the acceptability of this model of consent. Drawing on findings from empirical research about the role of trust in decision‐making, we argue that an account of entrustment may be an appropriate way of addressing current challenges of seeking consent for biobank research in Africa. We propose a set of key points to consider that can support the proposed entrustment framework.     

Common ancestry or environmental trait filters: cross‐continental comparisons of trait–habitat relationships in tropical anuran amphibian assemblages

Aim To investigate whether trait–habitat relations in biological communities converge across three global regions. The goal is to assess the role of habitat templets in shaping trait assemblages when different assembly mechanisms are operating and to test whether trait–habitat relations reflect a common evolutionary history or environmental trait filters. Location Guiana Shield, South America; Upper Guinea Forest Block, West Africa; Borneo rain forests, Southeast Asia. Methods We compared large anuran amphibian data sets at both the regional and cross‐continental scale. We applied a combination of three‐table ordinations (RLQ) and permutation model‐based multivariate fourth‐corner statistics to test for trait–habitat relationships at both scales and used phylogenetic comparative methods to quantify phylogenetic signal in traits that enter these analyses. Results Despite the existence of significant trait–habitat links and congruent trait patterns, we did not find evidence for the existence of a universal trait–habitat relationship at the assemblage level and no clear sign for cross‐continental convergence of trait–habitat relations. Patterns rather varied between continents. Despite the fact that a number of traits were conserved across phylogenies, the phylogenetic signal varied between regions. Trait–habitat relations therefore not only reflect a common evolutionary history, but also more recently operating environmental trait filters that ultimately determine the trait composition in regional assemblages. Main conclusions Integrating trait–habitat links into analyses of biological assemblages can enhance the predictive power and general application of species assembly rules in community and macroecology, particularly when phylogenetic comparative methods are simultaneously applied. However, in order to predict trait composition based on habitat templets, trait–habitat links cannot be assumed to be universal but rather have to be individually established in different regions prior to model building. Only then can direct trait‐based approaches be useful tools for predicting fundamental community patterns.     

Seasonal and spatial hydrological variability drives aquatic biodiversity in a flood‐pulsed,sub‐tropical wetland

1. Flood‐pulsed wetlands make vital contributions to local and global biodiversity. However, the patterns and controls of spatial and temporal variation in aquatic biodiversity in flood‐pulsed wetlands are not well understood. We analysed the relationship between variation in hydrological regime and the patterns of aquatic biodiversity in a large pristine flood‐pulsed wetland, the Okavango Delta, Botswana. 2. Surveys of water chemistry, diatoms and macroinvertebrates were conducted over the seasonal phases of the flood pulse. Hydrological variables of flood frequency and hydroperiod class were collated from 16 years of satellite images. Multivariate regression trees and generalised least squares regression were used to determine the chief controls of community composition and taxon richness. 3. Hydroperiod class, phase of the flood and conductivity explained 32% and 43% of the variation in diatom and invertebrate taxon richness, respectively. There was a negative relationship between hydroperiod class and invertebrate taxon richness on the rising, peak and receding flood, whereas at low flood there was no significant relationship. Multivariate regression tree analysis revealed hydroperiod class, phase of the flood and conductivity as the dominant forces shaping invertebrate and diatom community composition. 4. Seasonal and spatial variation in hydrological conditions are the principal drivers of variation in aquatic biodiversity in flood‐pulsed wetlands. In pristine flood‐pulsed wetlands, increased productivity caused by the arrival of the flood waters appears to override disturbance and connectivity in shaping taxon richness and community composition. Thus, these data suggest that the maintenance of a rich mosaic of habitats covering a broad range of hydroperiod is the key to preserving aquatic biodiversity and natural ecosystem function in flood‐pulsed wetlands.     

Survival of Escherichia coli O157:H7 and Salmonella enterica serovar Typhimurium in manure and manure‐amended soil under tropical climatic conditions in Sub‐Saharan Africa

Aims: To establish the fate of Escherichia coli O157:H7 and Salmonella Typhimurium in manure and manure‐amended agricultural soils under tropical conditions in Sub‐Saharan Africa. Methods and Results: Survival of nonvirulent E. coli O157:H7 and Salm. Typhimurium at 4 and 7 log CFU g^?1 in manure and manure‐amended soil maintained at ≥80% r.h. or exposed to exclusive field or screen house conditions was determined in the Central Agro‐Ecological Zone of Uganda. Maintaining the matrices at high moisture level promoted the persistence of high‐density inocula and enhanced the decline of low‐density inocula in the screen house, but moisture condition did not affect survival in the field. The large majority of the survival kinetics displayed complex patterns corresponding to the Double Weibull model. The two enteric bacteria survived longer in manure‐amended soil than in manure. The 7 log CFU g^?1E. coli O157:H7 and Salm. Typhimurium survived for 49–84 and 63–98 days, while at 4 log CFU g^?1, persistence was 21–28 and 35–42 days, respectively. Conclusions: Under tropical conditions, E. coli O157:H7 and Salm. Typhimurium persisted for 4 and 6 weeks at low inoculum density and for 12 and 14 weeks at high inoculum density, respectively. Significance and Impact of the Study: Persistence in the tropics was (i) mostly shorter than previously observed in temperate regions thus suggesting that biophysical conditions in the tropics might be more detrimental to enteric bacteria than in temperate environments; (ii) inconsistent with published data isothermally determined previously hence indicating the irrelevance of single point isothermal data to estimate survival under dynamic temperature conditions.     

Stump‐harvesting for bioenergy probably has transient impacts on abundance,richness and community structure of beetle assemblages

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Seasonal changes in population structure of the tropical deep‐water kelp Laminaria abyssalis

Tropical kelp populations are rare and anomalous relicts of shallow‐water populations that existed during glacial periods of cooler oceanographic climate. The endemic Brazilian tropical kelp, Laminaria abyssalis Joly and Oliveira Filho, occurred at depths below 40 m. The seasonal variations in biological aspects of L. abyssalis sporophyte populations and local variations in seawater nutrients and temperature were evaluated. A population was sampled four times between the austral spring of 2005 to winter 2006. Seasonal variations in the population structure and in the tissue content of nitrogen (N), carbohydrate and pigments were observed. Higher density (6.3 individuals m^?2), biomass (7.3 kg m^?2) and blade area (13 221 cm²) were observed in summer, while the highest percentage of tissue total N (1.6%), carbohydrates (32.9%) and photosynthetic pigments (chlorophyll a = 1.9% and chlorophyll c = 0.4%) were observed in spring. The highest surface area of fertile tissue in L. abyssalis sporophytes (2.36%) was recorded in winter, indicating winter as the season when more investments are made in reproduction. The highest concentrations of total N (6.3 μM) and phosphate (0.6 μM) in seawater were observed in spring and summer, respectively. Seawater temperatures lower than 20°C, which are characteristic of upwelling waters, occurred every month and were most frequent in spring and summer. We show that L. abyssalis invests more in growth in spring and summer and reaches the greatest thallus size and population density in summer. The lower abundance during winter may be related to the lower frequency of temperatures below 20°C and the local seasonal storms that cause turnover of rhodoliths, the main substrate for L. abyssalis.     

Phenotypic constraints and community structure: Linking trade‐offs within and among species

Trade‐offs are central to many topics in biology, from the evolution of life histories to ecological mechanisms of species coexistence. Trade‐offs observed among species may reflect pervasive constraints on phenotypes that are achievable given biophysical and resource limitations. If so, then among‐species trade‐offs should be consistent with trade‐offs within species. Alternatively, trait variation among co‐occurring species may reflect historical contingencies during community assembly rather than within‐species constraints. Here, we test whether a key trade‐off between relative growth rate (RGR) and water‐use efficiency (WUE) among Sonoran Desert winter annual plants is apparent within four species representing different strategies in the system. We grew progeny of maternal families from multiple populations in a greenhouse common garden. One species, Pectocarya recurvata, displayed the expected RGR–WUE trade‐off among families within populations. For other species, although RGR and WUE often varied clinally among populations, among‐family variation within populations was lacking, implicating a role for past selection on these traits. Our results suggest that a combination of limited genetic variation in single traits and negative trait correlations could pose constraints on the evolution of a high‐RGR and high‐WUE phenotype within species, providing a microevolutionary explanation for phenotypes that influence community‐level patterns of abundance and coexistence.