Spatial variability of mangrove fish assemblage composition in the tropical eastern Pacific Ocean

Mangroves in the tropical eastern Pacific (TEP) constitute a dominant coastal ecosystem that harbours diverse and economically important fish assemblages. We describe here regional scale patterns in the composition of this poorly documented mangrove ichthyofauna. A review of available studies (including own data) from five countries covering the entire region was performed. Species abundance distribution curves were constructed and compared among studies. Relative abundance data of fish species and families were analysed with classification and ordination techniques. Common species and families responsible for differences among localities were identified. Overall, 315 fish species associated to mangroves of the TEP were identified. Fifteen fish families accounted for 80 % or more of the relative abundance of all studies. Despite the use of different sampling techniques, common features arose for most of the mangrove fish assemblages. Clupeidae were numerically dominant throughout the region, while Gerreidae were particularly dominant in the northern mangroves. The catch mass contributions of families from studies where these data were available indicated a dominance of Ariidae, Centropomidae, Lutjanidae and Tetraodontidae. A relatively uniform composition at the family (and sometimes species) level supports recent claims to merge the Panamic with the Mexican province in the TEP according to the distribution of the shore fish fauna. Similarities found with other estuarine-mangrove ichthyofaunas in the Neotropics may be related to the connectedness of these regions in past geological times. Quantitative assessments of mangrove fish communities in four areas of the TEP would improve further zoogeographic analyses and facilitate the development of conservation strategies.     

Indo-Pacific echinoids in the tropical eastern Pacific

The existing literature reports that only one species of Indo-Pacific echinoid (Echinometra oblonga), occurs in the eastern Pacific. In this study we confirm the presence of this species at Islas Revillagigedo and also report the presence of two species ofEchinothrix (a genus hitherto unknown outside the Indo-Pacific) at Isla del Coco and at Clipperton Island. We also present evidence from isozymes and from mitochondrial DNA sequences indicating that at least one individual ofDiadema at Clipperton may belong to a maternal lineage characteristic of the west Pacific speciesD. savignyi. These data are consistent with the hypothesis that the observed populations of Indo-Pacific echinoid species are recent arrivals to the eastern Pacific, as opposed to the view that they are relicts of Tethyan pan-tropical distributions.Echinothrix diadema, in particular, may have arrived at Isla del Coco during the 1982-1983 El Nifio. In addition to Indo-Pacific species, Clipperton, Isla del Coco and the Revillagigedos contain a complement of eastern Pacific echinoids. The echinoid faunas of these islands should, therefore, be regarded as mixtures of two biogeographic provinces. Though none of the Indo-Pacific species are known to have reached the coast of the American mainland, their presence at the offshore islands of the eastern Pacific suggests that, for some echinoids, the East Pacific Barrier is not as formidable an obstacle to migration as was previously thought.     

Nitrite oxidation in the upper water column and oxygen minimum zone of the eastern tropical North Pacific Ocean

Nitrogen (N) is an essential nutrient in the sea and its distribution is controlled by microorganisms. Within the N cycle, nitrite (NO₂⁻) has a central role because its intermediate redox state allows both oxidation and reduction, and so it may be used by several coupled and/or competing microbial processes. In the upper water column and oxygen minimum zone (OMZ) of the eastern tropical North Pacific Ocean (ETNP), we investigated aerobic NO₂⁻ oxidation, and its relationship to ammonia (NH₃) oxidation, using rate measurements, quantification of NO₂⁻-oxidizing bacteria via quantitative PCR (QPCR), and pyrosequencing. ¹⁵NO₂⁻ oxidation rates typically exhibited two subsurface maxima at six stations sampled: one located below the euphotic zone and beneath NH₃ oxidation rate maxima, and another within the OMZ. ¹⁵NO₂⁻ oxidation rates were highest where dissolved oxygen concentrations were <5 μM, where NO₂⁻ accumulated, and when nitrate (NO₃⁻) reductase genes were expressed; they are likely sustained by NO₃⁻ reduction at these depths. QPCR and pyrosequencing data were strongly correlated (r²=0.79), and indicated that Nitrospina bacteria numbered up to 9.25% of bacterial communities. Different Nitrospina groups were distributed across different depth ranges, suggesting significant ecological diversity within Nitrospina as a whole. Across the data set, ¹⁵NO₂⁻ oxidation rates were decoupled from ¹⁵NH₄⁺ oxidation rates, but correlated with Nitrospina (r²=0.246, P<0.05) and NO₂⁻ concentrations (r²=0.276, P<0.05). Our findings suggest that Nitrospina have a quantitatively important role in NO₂⁻ oxidation and N cycling in the ETNP, and provide new insight into their ecology and interactions with other N-cycling processes in this biogeochemically important region of the ocean.     

Vertical distribution of Pleuromamma (Copepoda: Metridinidae) across the eastern North Pacific Ocean

Vertical distributions of six species of Pleuromamma at ten stations across the eastern North Pacific Ocean from Honolulu to San Diego were determined from oblique Longhurst-Hardy Plankton Recorder tows to 650 m (350–450 m in the California Current). Vertical resolution was 20 m below 200 m and 5–10 m above. There was considerable overlap in surface layer distributions at night among all co-occurring species; daytime distributions showed less overlap. All species generally occurred deeper both day and night as distance offshore increased. The proportion of a species' population that remained at daytime depths during the night decreased with distance offshore. Warm water species penetrated into the California Current and nearshore region to a much greater extent than cool water species entered central gyre waters.     

Reproductive variables of Urotrygon rogersi (Batoidea: Urotrygonidae): a species with a triannual reproductive cycle in the eastern tropical Pacific Ocean

Reproductive aspects of the round ray Urotrygon rogersi were studied based on 2005 specimens obtained in the artisanal shrimp fishery operating on the Colombian Pacific coast. Females reached greater maximum total length (L(T) ), disc width (W(D) ) and mass (M) (38·0 cm, 19·9 cm and 348 g) than males (32·5 cm, 17·0 cm and 165 g). Sex ratio of juveniles and adults was 1:1. Clasper length increased rapidly between 10·0 and 12·5 cm W(D) . The smallest mature male measured 10·5 cm W(D) and the largest immature individual 13·7 cm W(D) . Male first maturity was reached at 61·8% of maximum W(D) , and estimated W(D50) was between 11·5 and 11·8 cm. The smallest mature female measured 10·5 cm W(D) ; the size at first maturity was 52·8% of maximum W(D) , and estimated W(D50) was between 11·8 and 12·3 cm. Embryos were found in females ≥ 10·5 cm W(D) and maximum fecundity was three embryos per female (mode = 1) and varied with maternal size. Embryos were found in all months, but three birthing peaks per year were identified and a gestation period of 4-5 months estimated. Based on ovulation time, embryonic growth and parturition dates, a triannual reproductive cycle was inferred for this species, with overlapping ovarian and uterine cycles. These results suggest that U. rogersi has a reproductive strategy based on low fecundity, a rapid reproductive cycle (short ovulation and gestation time), three birth peaks per year and large embryos. This strategy probably allows U. rogersi to withstand the fishing pressure they are subject to on the Colombian Pacific coast. The results also suggest that the study area is an important nursery and reproductive area for this species.     

Redescription of Ammodytoides gilli, the tropical eastern Pacific sand lance (Perciformes: Ammodytidae)

Ammodytoides gilli (Bean, 1895) is the correct name for the tropical eastern Pacific sand lance. Its range is extended from Cabo San Lucas, Baja California south to Panama, Ecuador, and the Galapagos Islands. Ammodytes lucasanus Beebe and Tee-Van, 1938 is a junior synonym. Types of both nominal species were re-examined. The species is redescribed based on 50 specimens (42.3-115 mm SL) from 12 lots and is compared with other known species of Ammodytoides. Changes in ontogeny from the smallest known specimen (42.3 mm SL, illustrated) are detailed including reduction in the posterior dorsal fin lobe and development of branched dorsal and anal fin rays.     

Structural-functional relationships in the pelagic community of the eastern tropical Atlantic Ocean

Sampling was carried out in the eastern tropical Atlantic duringJuly–September, 1987 on four transects at latitudes 6,12, 18 and 24°W, from 6°S to 4°N. A total numberof 81 stations were occupied where physical, chemical and biologicalmeasurements were taken. Temperature, salinity, chlorophylla, phytoplankton, primary production (PP), bacterial production,micro-, meso-, macrozooplankton and mesopelagic fish and squidwere sampled in the upper 120 m layer. The biomass size spectrumof the plankton community was relatively flat within the divergencezone but the slope of the size spectrum increased towards theconvergence zone meaning an increased contribution of the small-sizedorganisms. Higher turnover rates (the ratio of PP to the totalcommunity biomass) were observed in regions where the size spectrasloped more steeply. PP exceeded the community metabolism bythree to five times in regions where the size spectra were sharplysloped. In regions with flat-type spectra (with slopes from-0.2 to 0) a balance between PP and community metabolism wasobserved. The variation coefficient and the dispersion index(the variance to mean ratio) indicated an increase of the spatialvariability of biomass in the sequence: ‘phytoplankton–mesozooplankton–macrozooplankton–micronekton’.At the higher trophic level of the zooplankton community, betweenthe biomass of squid and gelatinous zooplankton, a logarithmiclinear relationship was derived. Squid actively consumed gelatinousorganisms in regions of high concentrations of their prey, althoughlarge copepods, euphausiids, amphipods, flying fish, and myctophidfish also contributed to their diet.     

New insights into the trophic ecology of the scalloped hammerhead shark,Sphyrna lewini,in the eastern tropical Pacific Ocean

Scalloped hammerhead shark, Sphyrna lewini, is considered a generalist predator, showing individual specializations and different trophic levels. This species inhabits both oceanic islands and coastal nursery areas in the eastern tropical Pacific (ETP) Ocean. Existing trophic ecology studies on S. lewini have been focused on stomach contents. This study provides new insights into its foraging preferences, habitat use, and trophic position, using stable isotope analysis (SIA) of muscle tissue. Stable isotope signatures of δ¹³C and δ¹⁵N were determined in S. lewini muscles (n?=?29) from the Ecuadorian Pacific in 2013. Trophic position (TP), isotopic niches, and overlap of S. lewini were estimated by sex, age, and maturity stages to infer their dietary habits throughout life stages. SIA revealed complex movement patterns related to sex and age classes of S. lewini, highlighting high degrees of dietary plasticity and habitat use, with a stronger relation to coastal regions than previously reported. This study provides crucial information regarding essential areas and the related migration behavior of S. lewini, with important implications for their conservation and management in the ETP.

     

Late Holocene sea level indicators from twelve atolls in the central and eastern Tuamotus (Pacific Ocean)

New sea-level data for the late Holocene period are reported from twelve atolls of the Tuamotu archipelago: Faaite, Hikueru, Marokau, Hao, Amanu, Tatakoto, Pukarua, Nukutavake, Vairaatea, Tureia, Nukutipipi, and Hereheretue. The data come from coral conglomerate outcrops, coral colonies in growth position, in situ reef framework and marine notches; they give consistent results, and their ages are controlled by 29 radiocarbon datings. The Holocene MSL remained 0.8±0.2 m higher than at present, from before 4000 years BP until at least 1500 years BP, then dropped gradually to the present level. This pattern is very similar to that reported from the northwest Tuamotus, suggesting the absence of measurable differential vertical movements over a distance greater than 1300 km during the late Holocene. Effects of the 1983 cyclones on reef morphology are reported from some atolls and radiocarbon dates of some storm-generated reef blocks are given.     

Dispersal and speciation of skinks among archipelagos in the tropical Pacific Ocean

Summary We examined the potential effects of geography on the distribution and speciation of skinks on tropical Pacific archipelagos. The entire tropical Pacific skink fauna was divided into continental (found also in continental areas), Pacific (endemic to the study area but found within more than one archipelago) and endemic (found within only one archipelago) species categories. The number and proportion of skinks within each species category were determined for each of the 27 archipelagos in the study area. Nine geographic variables reflecting archipelago size, isolation and elevation were estimated for each archipelago. Principal components analysis was used to reduce the nine variables to three uncorrelated composite variables that were interpreted as representing archipelago size, isolation and elevation. Numbers and proportions of skinks in each category within an archipelago were related to the composite geographic variables using multiple linear regression analysis. Archipelago size and isolation were important predictors of both skink diversity and endemism. Results were then compared to diversity and endemism of birds within the study area. Skinks showed an archipelago-wide level of endemism similar to that of birds. On an archipelago by archipelago basis, however, large differences between birds and skinks were evident. In particular, the New Caledonia skink fauna was much more endemic than that of birds. The bird faunas of Hawaii and the Marquesas were nearly completely endemic, while no endemic skinks occurred in these two archipelagos. These differences presumably reflect the relative dispersal powers of skinks and birds and, consequently, rates of colonization and speciation. Differences may also be due partly to morphological conservatism among isolated skink populations and the occurrence of cryptic species that have not yet been identified as separate species. The discovery of such cryptic species, however, is unlikely to increase the endemic skink fauna of Hawaii and other distant archipelagos to a level commensurate with that of birds. Differences in endemism between skinks and birds may also be due to unknown local ecological interactions.     

Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific

The structure and diversity of bacterial communities associated with the oxygen minimum zone (OMZ) of the eastern tropical South Pacific was studied through phylogenetic analysis. Clone libraries of 16S rRNA gene fragments were constructed using environmental DNA collected from the OMZ (60 m and 200 m), the sea surface (10 m), and the deep oxycline (450 m). At the class level, the majority of sequences affiliated to the gamma- (53.7%) and alpha-Proteobacteria (19.7%), and to the Bacteroidetes (11.2%). A vertical partitioning of the bacterial communities was observed, with main differences between the suboxic OMZ and the more oxygenated surface and deep oxycline waters. At the surface, the microbial community was predominantly characterized by SAR86, Loktanella and unclassified Flavobacteriaceae, whereas the deeper layer was dominated by Sulfitobacter and unclassified Alteromonadaceae. In the OMZ, major constituents affiliated to the marine SAR11 clade and to thiotrophic gamma-symbionts (25% of all sequences), a group not commonly found in pelagic waters. Sequences affiliating to the phylum Chloroflexi, to the AGG47 and SAR202 clades, to the delta-Proteobacteria, to the Acidobacteria, and to the 'anammox group' of the Planctomycetes were found exclusively in the OMZ. The bacterial richness in the OMZ was higher than in the oxic surface and deeper oxycline, as revealed by rarefaction analysis and the Chao1 richness estimator (surface: 45 +/- 8, deeper oxycline: 76 +/- 26; OMZ (60 m): 97 +/- 33, OMZ (200 m): 109 +/- 31). OMZ bacterial diversity indices (Fisher's: approximately 30 +/- 5, Shannon's: approximately 3.31, inverse Simpson's: approximately 20) were similar to those found in other pelagic marine environments. Thus, our results indicate a distinct and diverse bacterial community within the OMZ, with presumably novel and yet uncultivated bacterial lineages.     

Seasonal occurrence of silicoflagellate morphologies in different environments of the eastern Pacific Ocean

Data on weekly to bimonthly particle flux collected by sediment traps in three environments show that forms of silicoflagellates do not have a simple and consistent relationship to either temperature or productivity of the overlying water column. Sites were located in the fjords of British Columbia, along a transect off the coast of southern Oregon, and in San Pedro Basin of the Southern California Bight. Either the “cool”Distephanus speculum or the “warm”Dictyocha messanensis may dominate at temperatures over a range from 10–19°C.D. speculum dominated high-productivity periods off Oregon, whileD. messanensis dominated during coastal upwelling events in the San Pedro Basin, regardless of surface temperature.Octactis pulchra showed no distinctive trend in the San Pedro Basin, the only locality where it was observed. The isolated presence ofD. speculum in the fjords, where mixed-zone salinity may be as low as 11‰, indicates a tolerance for hyposaline waters, but no other trends could be defined with respect to surface salinity.