尘螨变应原Der f 1核酸序列测定及其分子进化分析

目的：对尘螨主要变应原Der f 1进行核酸序列测定,探讨其系统进化信息。方法：根据Genbank公布的Der f 1基因序列设计引物,巢式PCR扩增Der f 1的cDNA,纯化、回收、克隆至pMD19-T simple后进行序列测定,序列比对后用Clustal W1.83构建分子进化树。结果：成功扩增出Der f 1的cDNA片段,测序表明该基因含ORF1个,长度966bp,与参考序列同源性达99．9％。该变应原具半胱氨酸蛋白酶活性,与果蝇进化关系最远,与梅氏嗜霉螨进化关系最近。结论：成功获得了尘螨变应原Der f 1基因片段．根据其编码的氨基酸序列构建出的系统进化树与形态学分类不一致。     

尘螨变应原Derf1真核表达载体的构建及转染CHO细胞

目的：构建尘螨变应原Der f1真核表达载体,转染真核细胞并进行蛋白表达。方法：根据Genebank中Der f1基因的核酸序列（AB034946）,设计引物,采用PCR法,从保存的JM109工程菌中扩增Der f1编码基因,克隆到真核表达质粒pcDNA3.1/myc-his A上,以脂质体法转染CHO细胞,经G418筛选,进行稳定表达细胞株的筛选和鉴定。结果：将目的基因Der f1成功连接到pcDNA3.1/myc-hisA-Derf1并转染CHO细胞,获得稳定表达的CHO细胞株。结论：成功构建了尘螨变应原Der f1真核表达载体,并转染CHO细胞表达蛋白质。     

尘螨变应原Der f1全序列的原核表达及生物信息学分析

目的 构建尘螨变应原Der f1原核表达体系,并了解其分子特征.方法 提取粉尘螨总RNA,用RT-PCR合成Der f1编码基因,将其克隆至pMD19-T载体,亚克隆至表达载体pET-28a( ),转化至大肠杆菌并用IPTG诱导表达.用生物信息学软件对测序结果进行分析并预测其空间结构.结果 从粉尘螨总RNA中扩增获得Der f1 cDNA片段,成功构建了表达质粒pET-28a( )-Der f1,Western blotting显示原核表达获得成功.测序结果提交GenBank,登陆号为EU095368,该基因长966 bp,与参考序列同源性达99.9%,推测其编码氨基酸321个,属疏水蛋白,位于细胞外,信号肽位于1～18氨基酸处.同源性分析提示Der f1和Eur m1相似率为88%,而Der f1和Der p1的相似率为77%,分子进化树中粉尘螨和梅氏嗜霉螨聚成一簇.Der f1的二级结构由α-螺旋(109 aa,33.96%)、延伸链(55 aa,17.13%)、β-转角(18 aa,5.61%) 和随机卷曲(139 aa,43.30%)组成.结论 尘螨变应原Der f1原核表达获得成功,为进一步生产重组变应原奠定了基础.生物信息学分析表明粉尘螨和梅氏嗜霉螨的亲缘关系可能更近,而与屋尘螨关系稍远,此与现行的形态学分类系统并不符合.     

尘螨变应原Der fl全序列的原核表达及生物信息学分析

目的 构建尘螨变应原Der fl原核表达体系,并了解其分子特征。方法 提取粉尘螨总RNA,用RT—PCR合成Der fl编码基因,将其克隆至pMD19-T载体,亚克隆至表达载体pET-28a（＋）,转化至大肠杆菌并刚IPTG诱导表达。用生物信息学软件对测序结果进行分析并预测其空间结构。结果从粉尘螨总RNA中扩增获得Der fl cDNA片段,成功构建了表达质粒pET-28a（＋）-Der fl,Western blotting显示原核表达获得成功。测序结果提交GenBank,臀陆号为EU095368,该基因长966bp,与参考序列同源性达99．9％,推测其编码氩基酸321个,属疏水蛋白,位于细胞外,信号肽位于1～18氨基酸处。同源性分析提示Der fl和Eur ml相似率为88％,而Der fl和Derpl的相似率为77％,分子进化树中粉尘螨和梅氏嗜霉螨聚成一簇。Derfl的二级结构由α-螺旋（109aa,33．96％）、延伸链（55aa,17．13％）、β-转角（18aa,5．61％）和随机卷曲（139aa,43．30％）组成：结论 尘螨变麻原Der fl原核表达获得成功,为进一步生产重组变麻原奠定了基础。生物信息学分析表明粉尘螨和梅氏嗜霉螨的亲缘关系可能更近,而与屋尘螨关系稍远,此与现行的形态学分类系统并不符合。     

药用野生稻复合体ITS1和ITS2序列变异及其系统进化分析

通过PCR扩增并测序分析稻属药用野生稻复合体5个野生稻种基因组完整的ITS区及5.8S区,并与栽培稻ITS序列进行比较,构建分子系统进化树,探讨了稻属药用野生稻复合体内不同种间的亲缘关系和系统进化.结果表明,ITS1和ITS2均有较高的G/C含量,ITS1序列的长度多态性相对较高,ITS2序列的碱基突变频率较高.药用野生稻和高秆野生稻亲缘关系很近,而与栽培稻亲缘关系较远;短药野生稻、斑点野生稻、澳洲野生稻与药用野生稻亲缘关系渐近.处于进化的过渡阶段.     

分子进化生物学中序列分析方法的新进展

简要介绍了分子进化生物学中序列分析方法的最新进展,特别强调了似然比检验和贝叶斯推论在分子进化和系统发育假说检验中的重要性,并介绍了新方法的一些成功应用,同时还给出了一些重要的信息资源。     

分子进化生物学中序列分析方法的新进展

简要介绍了分子进化生物学中序列分析方法的最新进展,特别强调了似然比检验和贝叶斯推论在分子进化和系统发育假说检验中的重要性,并介绍了新方法的一些成功应用,同时还给出了一些重要的信息资源。     

长臂猿的DNA序列进化及其系统发育研究

本文测定了来自白眉长臂猿、黑冠长臂猿、白手长臂猿和合趾长臂猿３５２～３９９ｂｐ的线粒体细胞色素ｂ基因的序列。发现自然选择对该基因ＤＮＡ序列水平的进化具有显著的嵱跋臁＝岷锨叭说男蛄校颐枪菇讼低车某け墼撤肿酉低呈鳌Ｎ颐堑慕峁砻鳎け墼呈魨可分为４组：（１）白眉长臂猿组,仅一个种;（２）合趾猿组,仅合趾猿一个种;（３）白手长臂猿组,包括白手长臂猿、敏长臂猿、穆氏长臂猿、黑帽长臂猿和克氏长臂猿;（４）黑冠长臂嵲匙椋ê诠诔け墼场６杂τ谛翁系模锤鲅鞘簟：诠诔け墼逞侵旨涞囊糯只潭认詬著高于白手长臂猿亚属种间的分化程度。我们的结果提示,黑冠长臂猿可能至少应分为４个嵵郑窃诒;ど暇哂型戎匾牡匚唬Ψ直鸺右员;     

核rDNA的ITS序列在被子植物系统与进化研究中的应用

被子植物与其它高等真核生物相似,核rDNA是高度重复的串联序列。由于同步进化的力量,绝 大多数物种中这些重复单位间已发生纯合或接近纯合。核rDNA的内转录间隔区(ITS)包含被5.8S rDNA所分隔的ITS1和ITS2两个片段,ITSl的长度为187～298bp,ITS2为187～252bp,经PCR扩 增后可以方便地对这两个片段进行直接测序或克隆测序。ITS序列变异较快,可以提供较丰富的变异 位点和信息位点,已证实它是研究许多被子植物类群系统与进化的重要分子标记,不仅可用于解决科、 亚科、族、属、组内的系统发育和分类问题,而且可用于重建多倍体复合体的网状进化关系,探讨异源多倍体的起源过程,然而,正是由于ITS序列变异较快,它一般不适于科以上水平的系统发育研究。     

浙江省汉坦病毒基因分子进化分析

为了分析浙江省汉坦病毒分子流行病学的特点,本文应用分子生物学软件对1981～2007年从浙江省不同地区不同宿主分离的12株汉坦病毒的S、M基因序列进行分子进化分析,结果显示:浙江省属汉滩(HTN)型和汉城(SEO)型的混合型疫区,病毒的基因差异和亲缘远近关系主要表现在地区性,而与病毒分离的年代与宿主关系并不大,表现出明显的地理聚集现象,该现象在HTNV中的表现尤为明显,同一地区分离的病毒表现为较高的基因同源性,系统进化树上分布于同一或临近分支。另外发现分离自浙江省建德地区的Gou3和ZJ5株在SEOV进化枝中构成一独立分支,而且与国内外SEOV其他毒株的基因差异均较大,在浙江省建德地区存在着SOEV的特殊亚型病毒。     

Alpha-Actinin Is a New Type of House Dust Mite Allergen

Main indoor allergens for humans are from house dust mites. There are more than 30 allergens in Dermatophagoides farinae but only fourteen allergens have been identified from this mite including Der f 1–3, 6, 7, 10, 11, 13–18, and 22. A native allergen protein (Der f 24, 90 kDa) was purified from D. farinae by gel filtration and anionic exchange liquid chromatography combined with IgE immunodetection. Its primary structure was determined by Edman degradation, mass spectrometry analysis and cDNA cloning. Enzyme-linked immunosorbent assay inhibition tests (ELISA-IT), immunoblots, basophil activation test (BAT) and skin prick test (SPT) were performed to evaluate the allergenicity. It was identified as an alpha (α)-actinin containing a CaM-like domain with EF-hand motifs. Der f 24 reacted to sera from 85.4% (35/41) of patients on western blot analysis. It reduced ∼20% sera IgE reactivity to D. farinae extracts on a competitive ELISA. Eighty percent (8/10) of patients with D. farinae allergy showed positive reactions to Der f 24 in skin prick test. The expression of CD63 on basophils from patients was up-regulated by Der f 24 by ∼5.4-fold. Alpha-actinin was identified as a new type of house dust mite allergen. To the best of our knowledge, this is the first report of α-actinin as an allergen.     

MHC Class II-Restricted Presentation of the Major House Dust Mite Allergen Der p 1 Is GILT-Dependent: Implications for Allergic Asthma

Gamma-interferon-inducible lysosomal thiol reductase (GILT) is known to reduce disulfide bonds present in proteins internalized by antigen presenting cells, facilitating optimal processing and presentation of peptides on Major Histocompatibility Complex class II molecules, as well as the subsequent activation of CD4-positive T lymphocytes. Here, we show that GILT is required for class II-restricted processing and presentation of immunodominant epitopes from the major house dust mite allergen Der p 1. In the absence of GILT, CD4-positive T cell responses to Der p 1 are significantly reduced, resulting in mitigated allergic airway inflammation in response to Der p 1 and house dust mite extracts in a murine model of asthma.     

粉尘螨过敏原蛋白Der f 3 的表达纯化及活性鉴定

目的:制备有生物学活性的粉尘螨过敏原蛋白Der f 3。方法:构建带有StrepⅡ标签的原核表达体系Rosetta-p ET44a-Der f 3高效表达目的蛋白,分别用梯度透析法和亲和层析法对其进行复性纯化,通过Western Blot试验验证目的蛋白的有效表达,最后用丝氨酸蛋白酶特异荧光底物及粉尘螨过敏病人血清分别鉴定目的蛋白的酶学活性及免疫学活性。结果:利用原核表达体系成功表达了目的蛋白Der f 3,Western Blot结果显示有目的条带出现。复性纯化后的过敏原蛋白Der f 3能够成功降解丝氨酸蛋白酶特异性荧光底物,ELISA试验结果显示该蛋白血清特异性Ig E在4级以上粉尘螨过敏病人中阳性率为4%。结论:成功获得有酶学活性及免疫学活性的粉尘螨过敏原蛋白Der f 3,为生产高质量的诊断试剂和疫苗奠定了基础。     

House Dust Mite Allergen Regulates Constitutive Apoptosis of Normal and Asthmatic Neutrophils via Toll-Like Receptor 4

House dust mites (HDMs) induce allergic diseases such as asthma. Neutrophil apoptosis is an important process of innate immunity, and its dysregulation is associated with asthma. In this study, we examined the effects of HDM on constitutive apoptosis of normal and asthmatic neutrophils. Extract of Dermatophagoides pteronissinus (DP) inhibited neutrophil apoptosis, but Dermatophagoides farinae extract had no effect. Anti-apoptotic signaling mediated by DP involves in TLR4, Lyn, PI3K, Akt, ERK, and NF-κB in normal neutrophils. DP delayed cleavage of procaspase 9 and procaspase 3 and the decrease in Mcl-1 expression. Supernatant collected from DP-treated normal neutrophils inhibited the constitutive apoptosis of normal neutrophils, and S100A8 and S100A9 were identified as anti-apoptotic proteins in the supernatant. S100A8 and S100A9 transduced the anti-apoptotic signal via TLR4, Lyn, PI3K, Akt, ERK, and NF-κB. DP also suppressed asthmatic neutrophil apoptosis and induced secretion of S100A8 and S100A9, which delayed the constitutive apoptosis. The anti-apoptotic effects of DP, S100A8 and S100A9 in asthmatic neutrophils are associated with TLR4, Lyn, PI3K, Akt, ERK, and NF-κB. The concentrations of S100A8 and S100A9 were significantly elevated in asthmatic bronchoalveolar lavage fluid (BALF) when compared to normal BALF (p<0.01), but not in serum. S100A8 concentration in BALF was positively correlated with the number of BALF neutrophils and negatively correlated with FEV1(%). These findings improve our understanding of the role of HDM in regulation of neutrophil apoptosis in normal individuals and asthmatics and will enable elucidation of asthma pathogenesis.     

NMR Structure and IgE Epitopes of Blo t 21, a Major Dust Mite Allergen from Blomia tropicalis

Blo t 21 is a paralogue of the group 5 allergen, Blo t 5, a major allergen from the dust mite Blomia tropicalis. Blo t 21 has moderate sequence identity (40.7%) to Blo t 5 and low to moderate cross-reactivity to Blo t 5. In B. tropicalis, the most prevalent and allergenic allergens are in the order of Blo t 21, Blo t 5, and Blo t 7. Here, we determined the NMR solution structure of Blo t 21, which represents the first structure of the group 21 dust mite allergen. The structure of Blo t 21 closely resembles the structures of Blo t 5 and Der p 5, comprising three anti-parallel α-helices arranged in a helical bundle. Using site-directed mutagenesis and specific IgE binding ELISA, Blo t 21 was found to contain both conserved and unique charged IgE epitope residues at the L2 loop region and on helix α3. Cross-inhibition assays confirmed that Blo t 21 has a low to moderate cross-reactivity with Blo t 5 and Der p 5 and represents a novel group of major allergen in B. tropicalis. In addition to group 5 allergens, Blo t 21 has also a low to moderate cross-reactivity with group 21 allergens from Dermatophagoides mites, confirming that B. tropicalis is a major and distinct source of dust mite allergens.     

Regulation of Constitutive Neutrophil Apoptosis Due to House Dust Mite Allergen in Normal and Allergic Rhinitis Subjects

House dust mite (HDM) is a primary allergen in allergic rhinitis (AR) and asthma. Neutrophil apoptosis is associated with allergic diseases and innate immunity to infection. The present study examined how HDM affects constitutive neutrophil apoptosis in normal and AR subjects. Total IgE increased in AR subjects when compared to normal subjects, and patients with AR were HDM-specific IgE positive (+), which is specific IgE to Dermatophagoides pteronissinus and Dermatophagoides farinae. In normal and AR subjects, neutrophil apoptosis was inhibited by extract of Dermatophagoides pteronissinus (DP), but not by extract of Dermatophagoides farina (DF). Aprotinin (serine protease inhibitor) and E64 (cysteine protease inhibitor) have no effect on neutrophil apoptosis due to DP. The anti-apoptotic effect of DP was blocked by TLR4i, an inhibitor of TLR4, rottlerin, an inhibitor of PKCδ, PD98059, an inhibitor of ERK, and BAY-11-7085, an inhibitor of NF-κB. DP induced PKCδ, ERK, and NF-κB activation in a time-dependent manner. DP inhibited the cleavage of procaspase 3 and procaspase 9. The expression of IL-6, IL-8, TNF-α, G-CSF, GM-CSF, and CCL2 increased in the supernatant collected from the normal and AR neutrophils after DP treatment and the supernatant inhibited the apoptosis of normal and AR neutrophils. In summary, DP has anti-apoptotic effects on neutrophils of normal and AR subjects through the TLR4/PKCδ/ERK/NF-κB pathway, and this finding may contribute to solution of the pathogenic mechanism of allergic diseases triggered by DP.     

Crystal Structure of Der f 7, a Dust Mite Allergen from Dermatophagoides farinae

Background

Der f 7 is the group 7 allergen from the dust mite Dermatophagoides farinae, homologous to the major allergen Der p 7 from D. pteronyssinus. Monoclonal antibody that bind to residues Leu48 and Phe50 was found to inhibit IgE binding to residue Asp159, which is important for the cross-reactivity between Der f 7 and Der p 7.

Methodology/Principal Findings

Here, we report the crystal structure of Der f 7 that shows an elongated and curved molecule consisting of two anti-parallel β-sheets – one 4-stranded and the other 5-stranded – that wrap around a long C-terminal helix. The overall fold of Der f 7 is similar to Der p 7 but key difference was found in the β1–β2 loop region. In Der f 7, Leu48 and Phe50 are in close proximity to Asp159, explaining why monoclonal antibody binding to Leu48 and Phe50 can inhibit IgE binding to Asp159. Both Der f 7 and Der p 7 bind weakly to polymyxin B via a similar binding site that is formed by the N-terminal helix, the 4-stranded β-sheet and the C-terminal helix. The thermal stability of Der f 7 is significantly lower than that of Der p 7, and the stabilities of both allergens are highly depend on pH.

Conclusion/Significance

Der f 7 is homologous to Der p 7 in terms of the amino acid sequence and overall 3D structure but with significant differences in the region proximal to the IgE epitope and in thermal stability. The crystal structure of Der f 7 provides a basis for studying the function and allergenicity of this group of allergens.     

Asthma,Airway Symptoms and Rhinitis in Office Workers in Malaysia: Associations with House Dust Mite (HDM) Allergy,Cat Allergy and Levels of House Dust Mite Allergens in Office Dust

A prevalence study was conducted among office workers in Malaysia (N= 695). The aim of this study was to examine associations between asthma, airway symptoms, rhinitis and house dust mites (HDM) and cat allergy and HDM levels in office dust. Medical data was collected by a questionnaire. Skin prick tests were performed for HDM allergens (Dermatophagoides pteronyssinus, Dermatophagoides farinae) and cat allergen Felis domesticus. Indoor temperature and relative air humidity (RH) were measured in the offices and vacuumed dust samples were analyzed for HDM allergens. The prevalence of D. pteronyssinus, D. farinae and cat allergy were 50.3%, 49.0% and 25.5% respectively. Totally 9.6% had doctor-diagnosed asthma, 15.5% had current wheeze and 53.0% had current rhinitis. The Der p 1 (from D. pteronyssinus) and Der f 1 (from D. farinae) allergens levels in dust were 556 ng/g and 658 ng/g respectively. Statistical analysis was conducted by multilevel logistic regression, adjusting for age, gender, current smoking, HDM or cat allergy, home dampness and recent indoor painting at home. Office workers with HDM allergy had more wheeze (p= 0.035), any airway symptoms (p= 0.032), doctor-diagnosed asthma (p= 0.005), current asthma (p= 0.007), current rhinitis (p= 0.021) and rhinoconjuctivitis (p< 0.001). Cat allergy was associated with wheeze (p= 0.021), wheeze when not having a cold (p= 0.033), any airway symptoms (p= 0.034), doctor-diagnosed asthma (p= 0.010), current asthma (p= 0.020) and nasal allergy medication (p= 0.042). Der f 1 level in dust was associated with daytime breathlessness (p= 0.033) especially among those with HDM allergy. Der f 1 levels were correlated with indoor temperature (p< 0.001) and inversely correlated with RH (p< 0.001). In conclusion, HDM and cat allergies were common and independently associated with asthma, airway symptoms and rhinitis. Der f 1 allergen can be a risk factor for daytime breathlessness.