Effects of lactic acid bacteria in inoculants on changes in amino acid composition during ensilage of sterile and non-sterile ryegrass

A study was carried out on the changes occurring in the amino acid fraction of a hybrid ryegrass during ensilage in laboratory-scale silos to help to establish the relative roles of plant and microbial proteases on protein degradation in the silo. Herbage treatments included (i) normal grass without treatment (ii) lambda-irradiated grass (sterile) without treatment (iii) sterile, inoculated with a strain of Lactobacillus plantarum and (iv) sterile, inoculated with a strain of Lactobacillus paracasei subsp. paracasei. These treatments had a significant effect on silage amino acid profiles. Concentrations of free amino acids and the extent of amino acid catabolism varied with treatment. However, levels were notably higher in control silages after 90 days (free amino acid nitrogen constituting 54% of total amino acid nitrogen compared with 37, 32 and 22% for treatments i, ii and iv, respectively). These results indicate that the extent of protein hydrolysis during ensilage is influenced by factors other than rate of pH decline and plant protease activity, and that microbial proteases play a role.     

Analysis of protegrin structure–activity relationships: the structural characteristics important for antimicrobial activity using smoothed amino acid sequence descriptors

Protegrin antimicrobial peptides (AMP) possess a high activity against a variety of microorganisms. In the present contribution, we analyse the structural requirements of protegrin analogues reported by Ostberg and Kaznessis (Peptides 2005; 26: 197) for having antimicrobial activity against several microbial species by using interpretable QSAR models. Models were carried out using multiple linear regression (MLR) combined with genetic algorithm (GA) and smoothed amino acid sequence properties were employed for characterizing the peptide dataset. The main advantage of smoothing process is the alteration of local amino acid properties by the properties of the amino acids in the closer neighbourhood. We report models encompassing different characteristics for describing the activities against different microbial species. Our results suggest the existence of specific mechanisms of action for protegrin analogues against different microbial species.     

Balancing the amino acid needs of the dairy cow

In order to maximize milk protein production, one must present sufficient amounts of the essential amino acids to the intestinal tract in forms that can be absorbed. We do not know the specific tissue-level amino acid requirements of lactating cows, but they are likely to be similar to the amino acid content of milk protein with requirements for other metabolic functions similar to those in nonruminants. Formulating diets to meet these amino acid requirements is complicated because much of the dietary crude protein is converted to rumen microbial protein. Knowing the amount of dietary crude protein converted to ruminal microbial protein and the amino acid content of the rumen microbes; and the proportion of ruminally undegradable protein, its postruminal digestibility and amino acid content will allow one to make a reasonable estimate of the quality of protein presented for gastrointestinal digestion and absorption. Hypothetical calculations indicate potential dietary differences in quality of protein presented for absorption. Many of these differences correspond very well with production responses observed in research trials. Failure of this system to explain production results in other studies points to areas where additional information is still needed.     

非天然氨基酸细胞工厂的构建与应用

非天然氨基酸在医药、农药、材料等领域得到广泛应用,其绿色、高效合成越来越受到关注.近年来,随着合成生物学的快速发展,微生物细胞工厂为非天然氨基酸的制造提供了重要手段.文中从合成途径的重构、关键酶的设计改造及与前体的协同调控、竞争性旁路途径的敲除、辅因子循环系统的构建等方面介绍了 一系列非天然氨基酸细胞工厂构建与应用的研...     

引入固氮树种对辽东落叶松人工林土壤团聚体氨基糖的影响

土壤微生物残留物是稳定性碳库的重要组分,然而固氮树种引入对落叶松人工林土壤团聚体微生物残留物分布的影响还不清楚.为了阐明固氮树种对不同团聚体粒级内微生物残留物分布的影响,本研究以氨基糖作为微生物残留物的生物标识物,比较了辽东日本落叶松人工纯林和落叶松与固氮树种赤杨混交林土壤团聚体氨基糖的分布特征.结果表明: 赤杨引入不影响团聚体氨基糖的分布,但显著提高了团聚体氨基糖含量.与纯林相比,混交林土壤不同团聚体各粒级总氨基糖含量增加1.3～1.7倍.其中,混交林土壤团聚体内总氨基糖增加量的66.5%～66.9%来自氨基葡萄糖,30.0%～30.6%来自氨基半乳糖,2.5%～3.2%来自胞壁酸.赤杨引入显著提高了>2000 μm和<250 μm团聚体中的氨基葡萄糖/胞壁酸值,但不影响250～2000 μm粒级团聚体中真菌和细菌残留物的相对贡献.此外,赤杨引入增加了土壤不同团聚体内的氨基糖对土壤有机碳的贡献,但不影响团聚体粒级之间的微生物贡献,说明赤杨对微生物贡献的影响存在空间均一性.     

配糟对清香型白酒发酵中环境因子及微生物群落的影响

【背景】环境因子是影响微生物生长代谢的重要因素,解析半开放条件下酿造过程中环境因子对微生物群落演替的作用对于清香型白酒生产调控具有重要意义。配糟在白酒发酵过程中起着调节发酵速度的作用,其对微生物群落组成变化的影响尚不明确。【目的】揭示使用不同发酵周期配糟对清香型白酒发酵过程中环境因子及微生物群落演替的影响。【方法】采用PacBio测序平台和多元统计分析比较使用2种配糟酒醅中微生物群落结构组成,结合蒙特卡洛置换检验明确环境因子对微生物群落的影响。【结果】与使用正常发酵周期配糟酒醅相比,使用延长发酵周期配糟酒醅水分较低,而酸度、氨基酸态氮、总游离氨基酸、还原糖和残余淀粉较高;微生物多样性和丰富度分析发现,使用延长发酵周期配糟酒醅中细菌α多样性极显著高于使用正常发酵周期配糟酒醅(P<0.001),而真菌α多样性显著/极显著低于使用正常发酵周期配糟酒醅(P<0.05, P<0.001);通过组间差异性分析发现,细菌群落共产生28个差异指示种,而真菌群落共产生15个差异指示种;水分、酸度、氨基酸态氮、还原糖、残余淀粉和总游离氨基酸对微生物群落结构的影响显著(P<0.05)...     

Metabolic Fate of Cysteine and Methionine in Rumen Digesta

Estimates were obtained of the extent to which cysteine and methionine were incorporated into the protein of the microbes of rumen digesta without prior degradation and resynthesis. By using the amino acids labeled with both (35)S and (14)C, it was observed that a large proportion of the (35)S appeared in the sulfide pool and of the (14)C appeared in volatile fatty acids. By isolating the appropriate amino acid, obtaining the (14)C to (35)S ratio, and comparing this with the ratio in the added amino acid, the degree of direct incorporation was calculated. For cysteine it was estimated that at most 1% and for methionine, at most 11% of the amino acid in the free pool was incorporated unchanged into microbial protein. As a consequence of these findings, it is considered that the method for measuring microbial protein synthesis in rumen digesta based upon incorporation of (35)S from the free sulfide pool is not seriously affected by direct utilization of sulfur amino acids arising from dietary sources.     

Plant-microbe competition for soil amino acids in the alpine tundra: effects of freeze-thaw and dry-rewet events

Amino acids have been shown to be a potentially significant N source for the alpine sedge, Kobresia myosuroides. We hypothesised that freeze-thaw and dry-rewet events allow this plant species increased access to amino acids by disrupting microbial cells, which decreases the size of competing microbial populations, but increases soil amino acid concentrations. To test this hypothesis, we characterized freeze-thaw and dry-rewet events in the field and simulated them in laboratory experiments on plant-soil microcosms. In one experiment, ¹⁵N,¹³C-[2]-glycine was added to microcosms that had previously been subjected to a freeze-thaw or dry-rewet event, and isotopic concentrations in the plant and microbial fractions were compared to non-stressed controls. Microbial biomass and uptake of the labeled glycine were unaffected by the freezing and drying treatments, but microbial uptake of ¹⁵N was lower in the two warmer treatments (dry-rewet and summer control) then in the two colder treatments (freeze-thaw and fall control). Plant uptake of glycine-¹⁵N was decreased by climatic disturbance, and uptake in plants that had been frozen appeared to be dependent on the severity of the freeze. The fact that intact glycine was absorbed by the plants was confirmed by near equal enrichment of plant tissues in ¹³C and ¹⁵N. Plants under optimal conditions recovered 3.5% of the added ¹⁵N and microbes recovered 5.0%. The majority of the ¹³C and ¹⁵N label remained in a non-extractable fraction in the bulk soil. To better understand the isolated influences of environmental perturbations on soil amino acid pools and population sizes of amino-acid utilizing microbes, separate experiments were performed in which soils, alone, were subjected to drying and rewetting or freezing and thawing. Potential respiration of glycine and glutamate (substrate-induced respiration; SIR) by the soil microbial communities was unaffected by a single freeze-thaw event. Glycine SIR was decreased slightly (∼10%) by the most extreme drying treatment, but glutamate SIR was not significantly affected. Freezing lowered the concentration of water-extractable amino acids while drying increased their concentration. We interpret the surprising former result as either a decrease in proteolytic activity in frozen soils relative to amino acid uptake, or a stimulation in microbial uptake by physical nutrient release from the soil. We conclude that climatic disturbance does not provide opportunities for increased amino acid uptake by K. myosuroides, but that this plant competes well for amino acid N under non-stressed conditions, especially when soils are warm. We also note that this alpine tundra microbial community's high resistance to freeze-thaw and dry-rewet events is novel and contrasts with studies in other ecosystems. Received: 24 February 1997 / Accepted: 28 August 1997     

Variations in Soil Microbial Communities and Residues Along an Altitude Gradient on the Northern Slope of Changbai Mountain,China

Altitudinally-defined climate conditions provide specific vegetation types and soil environments that could influence soil microbial communities, which in turn may affect microbial residues. However, the knowledge is limited in terms of the degree to which microbial communities and residues present and differ along altitude. In this study, we examined the soil microbial communities and residues along the northern slope of Changbai Mountain, China using phospholipid fatty acid (PLFA) and amino sugar analysis, respectively. Soil samples were taken from five different vegetation belts defined by climates. Principal component analysis (PCA) revealed substantial differences in soil microbial community composition among study sites, appeared to be driven primarily by soil pH and C/N ratio on the first principal component (PC1) which accounted for 50.7% of the total sample variance. The alpine tundra was separated from forest sites on the second principal component (PC2) by a signifiscantly higher amount of fungal PLFA (18:2ω6,9). Soil pH and C/N ratio were also correlated with the ratios of Gram-positive to Gram-negative bacteria (Gm⁺/Gm⁻), glucosamine to galactosamine (GluN/GalN), and glucosamine to muramic acid (GluN/MurA). Both total PLFAs and amino sugars were positively correlated with soil organic carbon, inorganic nitrogen, available phosphorus and potassium. We concluded that soil pH and C/N ratio were the most important drivers for microbial community structure and amino sugar pattern, while substrate availability was of great importance in determining the concentrations of microbial communities and residues. These findings could be used to facilitate interpretation of soil microbial community and amino sugar data derived from measurements in latitude or managed forests.     

Substrate uptake in extremely halophilic microbial communities revealed by microautoradiography and fluorescence in situ hybridization

The combination of fluorescence in situ hybridization and microautoradiography (FISH-MAR approach) was applied to brine samples of a solar saltern crystallizer pond from Mallorca (Spain) where the simultaneous occurrence of Salinibacter spp. and the conspicuous square Archaea had been detected. Radioactively labeled bicarbonate, acetate, glycerol, and an amino acid mixture were tested as substrates for the microbial populations inhabiting such brines. The results indicated that hitherto uncultured 'square Archaea' do actively incorporate amino acids and acetate. However, Salinibacter spp. only showed amino acid incorporation in pure culture, but no evidence of such activity in their natural environment could be demonstrated. No glycerol incorporation was observed for any component of the microbial community.Communicated by W.D. Grant     

高等植物对氨基酸态氮的吸收与利用研究进展

植物能够在不经矿化的情况下直接吸收利用环境中的分子态氨基酸.氨基酸作为植物和微生物的优良碳源和氮源,二者对其吸收存在着激烈竞争,氨基酸态氮来源广、半衰期短的特点使其具有巨大的流通量.运用氮同位素示踪方法研究氨基酸对植物的氮营养贡献一直是国内外学者研究的热点,对揭示土壤肥力本质具有重要意义.本文对不同生态系统中氨基酸形态特征、代谢机制及营养贡献进行了简要综述,分析了氨基酸态氮在植物-土壤-微生物系统中的循环机制及生物有效性等方面研究现状和发展趋势,并提出了土壤氨基酸生物有效性环境调控、氨基酸碳-氮代谢及提高农田生态系统有机氮管理等待解决的科学问题.     

Analysis of muramic acid in holocene microbial environments by gas chromatography,electron impact,and fast atom bombardment mass spectrometry

Analytical procedures have been modified to determine the abundance of muramic acid in four different Holocene sediment samples. Muramic acid is specific to the peptidoglycan moiety of the cell walls of most eubacterial pro‐karyotic organisms. The following procedure seemed to be the most appropriate for the detection of muramic acid and amino acids, including diaminopimelic acid. Hydrolysis of the samples (in 6 N HCl, 4.5 h, at 100°C) was followed by separation and purification of amino sugars and amino acids using Amberlite XAD‐2 and then Bio‐Rad AG 50W‐X8 resins. The N,O‐heptafluorobutyryl‐n‐butyl ester derivatives were prepared by esterification in acidified (3 N HCl) n‐butanol for 3 h at 100°C, followed by acylation by refluxing with heptafluorobutyric anhydride in acetonitrile (2:1 v/v) for 12 min at 150°C. The derivatives were analyzed by gas chromatography (GC) and gas chromatography‐mass spectrometry. Fast atom bombardment (FAB) ionization was used for the muramic acid derivative to determine its molecular weight and structure, d‐and l‐amino acids were separated by GC and a capillary chiral column. By using this technique a stable N,O‐heptafluo‐robutyryl‐n‐butyl ester derivative of muramic acid was identified at picogram levels in Holocene sedimentary microbial communities. It has been reported previously that microorganisms in sediments rapidly degrade muramic acid from cell walls of dead prokaryotes. Kinetic experiments revealed that muramic acid was relatively stable in intact cell walls but decomposed rapidly in the free form. These investigations noted above showed that the concentration of muramic acid may be used as an indicator of the presence of the intact cell walls of cyanobacteria and most other bacteria in Holocene microbial communities, and of microbial contamination in samples older than the Holocene.     

Effect of microbial phytase on apparent ileal amino acid digestibility of phosphorus-adequate diets in growing pigs

Six ileally cannulated pigs (mean initial body weight 34.8 kg) were used to study the effect of microbial phytase on apparent ileal digestibility of P, total N and amino acids. Three P-adequate diets (digestible P concentration 2.3 g kg(- )l) containing barley (B), soyabean meal (S) or a mixture of the two (BS) with or without phytase supplement (1000 FTU x kg(-1)) were fed to pigs using a 6 x 6 Latin square design. The addition of phytase increased (p < 0.05) apparent ileal P digestibility of diets B, S and BS by 16.5, 19.2 and 19.2%, respectively. There was no effect of phytase on the ileal digestibility of total N. Apparent ileal digestibility of amino acids tended to increase in the BS diet supplemented with phytase (mean improvement of 2.2%); but no significant difference was found for any amino acid as compared with the unsupplemented diet. To asses the additivity of apparent amino acid digestibility, the determined values for the BS diet were compared to those calculated from digestibilities found in diets B and S. There were no significant differences between the determined and calculated values. It is concluded that the addition of microbial phytase to P-adequate diets does not affect ileal amino acid digestibility in growing pigs and that the apparent amino acid digestibility values determined in single ingredients may be additive when included into a complex diet.     

Crystalline serine hydroxymethyltransferase from an obligate methylotroph, Hyphomicrobium methylovorum

Optimal culture conditions of a methylotrophic Hyphomicrobium methylovorum and improved purification of serine hydroxymethyltransferase from the bacterium were established for the large-scale preparation of the enzyme. The first crystalline serine hydroxymethyltransferase from the microbial source was obtained in the apo form and found to be homogeneous. Amino acid analysis revealed that the enzyme had higher value per subunit for acidic and neutral amino acids than that from rabbit liver. The carboxy-terminal amino acid analysis suggested the sequence -Ile-Ala-Tyr.     

Comparative specificity of microbial acid proteinases for synthetic peptides. Primary specificity with Z-tetrapeptides

The substrates Z-X

Leu-(Ala)₂ and

Z-Phe X-(Ala)₂ (Z = benzyloxycarbonyl, X = various amino acid residues) were synthesized in order to investigate the primary specificity of acid proteinases from molds and yeasts. Since these peptides are mainly susceptible to cleavage by the enzymes at the peptide bonds shown by the arrows, it was possible to determine the specificity with respect to the amino acid residues on both sides of the splitting point. Pepsin was used for comparison. The results indicated that the microbial acid proteinases exhibit specificity for aromatic or hydrophobic amino acid residues on both sides of splitting point in peptide substrates, as does pepsin. However, the microbial enzymes showed somewhat broader specificity than pepsin. The former enzymes, which possess trypsinogen-activating ability, show specificity for a lysine residue, while pepsin or Mucor rennin-like enzyme does not. Although pepsin is very specific for a tyrosine residue on the imino side of the splitting point, the microbial enzymes do not show such stringency.     

Building microbial factories for the production of aromatic amino acid pathway derivatives: From commodity chemicals to plant-sourced natural products

The aromatic amino acid biosynthesis pathway, together with its downstream branches, represents one of the most commercially valuable biosynthetic pathways, producing a diverse range of complex molecules with many useful bioactive properties. Aromatic compounds are crucial components for major commercial segments, from polymers to foods, nutraceuticals, and pharmaceuticals, and the demand for such products has been projected to continue to increase at national and global levels. Compared to direct plant extraction and chemical synthesis, microbial production holds promise not only for much shorter cultivation periods and robustly higher yields, but also for enabling further derivatization to improve compound efficacy by tailoring new enzymatic steps. This review summarizes the biosynthetic pathways for a large repertoire of commercially valuable products that are derived from the aromatic amino acid biosynthesis pathway, and it highlights both generic strategies and specific solutions to overcome certain unique problems to enhance the productivities of microbial hosts.     

L-精氨酸产生菌的分子育种

L-精氨酸是一种非常重要的半必需氨基酸,其作为生物体生成NO的前体,参与尿素循环,对人和动物均具有重要的生理功能。现阶段生产精氨酸的主流方法是微生物发酵法,因此,如何快速、高效地选育精氨酸高产菌种成为业内关注的焦点。主要对精氨酸产生菌分子育种方法的最新研究进展进行了综述,并就目前存在的问题和发展方向进行了探讨。     

Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach

Background  

Selenocysteine and pyrrolysine are the 21st and 22nd amino acids, which are genetically encoded by stop codons. Since a number of microbial genomes have been completely sequenced to date, it is tempting to ask whether the 23rd amino acid is left undiscovered in these genomes. Recently, a computational study addressed this question and reported that no tRNA gene for unknown amino acid was found in genome sequences available. However, performance of the tRNA prediction program on an unknown tRNA family, which may have atypical sequence and structure, is unclear, thereby rendering their result inconclusive. A protein-level study will provide independent insight into the novel amino acid.     

Isolation of microorganisms which utilize acidic amino acid oligomers

The amino acid octamers ( -Glu)₈ and ( Asp)₈ were synthesized in order to screen for new microbial degraders of unnatural amino acid peptides. We have successfully isolated the microorganisms from soil acclimated to a medium containing the oligopeptides; they were classified as Klebsiella ornithinolytica, Delftia acidovorans, and α-Proteobacteria.     

有机物料种类及腐熟水平对土壤微生物群落的影响

应用Biolog方法研究了温室盆栽番茄条件下,施用不同种类及不同腐熟水平的有机物料对土壤微生物群落的影响,施用有机物料60d后取土分析土壤微生物群落多样性及土壤微生物对Biolog微平板中胺、氨基酸、糖、羧酸、聚合物和其它类碳源的利用情况,结果表明,施用有机物料可提高土壤微生物群落多样性,施用新鲜酒糟的多样性指数略高于施用腐熟10d酒糟,牛粪不同腐熟水平对多样性影响显著,且对多样性具有正向或负向的影响;对照和施用酒糟的土壤微生物对聚合物的利用率高于施用牛粪处理,施用新鲜物料处理的土壤微生物对聚合物的利用率高于施用腐熟物料处理。