Kinetic coefficients for simultaneous reduction of sulfate and uranium by Desulfovibrio desulfuricans

 Previously it was demonstrated that bacteria are capable of transforming soluble uranyl ion, U(VI), to insoluble uraninite, U(IV); however, the rate for this transformation has not been determined. We report the kinetic coefficients for Desulfovibrio desulfuricans DSM 1924 grown in a continuous-flow chemostat where pyruvate was the electron donor and sulfate was the electron acceptor. The medium was supplemented with 1 mM uranyl nitrate, and the chemostat flow rate ranged from 1.12 ml/h to 4.75 ml/h with incubation at 28°C. The maximum rate of pyruvate utilization (k) was determined to be 4.7 days^-1, while the half-velocity constant (K _s) was 127 mg/l. The yield coefficient (Y) of cells per mole of pyruvate oxidized was calculated to be 0.021 g, while the endogenous decay coefficient (k _d) was determined to be 0.072 days^-1. More than 90% of U(VI) was transformed to U(VI) in the chemostat under the conditions employed. Received: 7 September 1995/Received last revision: 10 January 1996/Accepted: 5 February 1996     

The use of Escherichia coli bearing a phoN gene for the removal of uranium and nickel from aqueous flows

A Citrobacter sp. originally isolated from metal-polluted soil accumulates heavy metals via metal-phosphate deposition utilizing inorganic phosphate liberated via PhoN phosphatase activity. Further strain development was limited by the non-transformability of this environmental isolate. Recombinant Escherichia coli DH5α bearing cloned phoN or the related phoC acquired metal-accumulating ability, which was compared with that of the Citrobacter sp. with respect to removal of uranyl ion (UO₂ ²⁺) from dilute aqueous flows and its deposition in the form of polycrystalline hydrogen uranyl phosphate (HUO₂PO₄). Subsequently, HUO₂PO₄-laden cells removed Ni²⁺ from dilute aqueous flows via intercalation of Ni²⁺ into the HUO₂PO₄ lattice. Despite comparable acid phosphatase activity in all three strains, the E. coli DH5α (phoN) construct was superior to Citrobacter N14 in both uranyl and nickel accumulation, while the E. coli DH5α (phoC) construct was greatly inferior in both respects. Expression of phosphatase activity alone is not the only factor that permits efficient and prolonged metal phosphate accumulation, and the data highlight possible differences in the PhoN and PhoC phosphatases, which are otherwise considered to be related in many respects. Received: 30 December 1997 / Received revision: 25 March 1998 / Accepted: 26 March 1998     

Role of uranium speciation in the uptake and translocation of uranium by plants

Uranium (U) uptake and translocation by plants was characterized using a computer speciation model to develop a nutrient culture system that provided U as a single predominant species in solution. A hydroponic uptake study determined that at pH 5.0, the uranyl (UO²⁺2) cation was more readily taken up and translocated by peas (Pisum sativum) than the hydroxyl and carbonate U complexes present in the solution at pH 6.0 and 8.0, respectively. A subsequent experiment tested the extent to which various monocot and dicot species take up and translocate the uranyl cation. Of the species screened, tepary bean (Phaseolus acutifolius) and red beet (Beta vulgaris) were the species showing the greatest accumulation of U. IN addition to providing fundamental information regarding U uptake by plants, the results obtained also have implications for the phytoremediation of U-contaminated soils. The initial characterization of U uptake by peas suggested that in the field, a soil pH of <5.5 would be required in order to provide U in the most plant-available form. A pot study using U-contaminated soil was therefore conducted to assess the extent to which two soil amendments, HEDTA and citric acid, were capable of acidifying the soil, increasing U solubility, and enhancing U uptake by red beet. Of these two amendments, only citric acid proved effective, decreasing the soil pH to 5.0 and increasing U accumulation by a factor of 14. The results of this pot study provide a basis for the development of an effective phytoremediation strategy for U-contaminated soils.     

Heterotrophic cultivation of Paracoccus denitrificans in a horizontal rotating tubular bioreactor

In this work, the heterotrophic cultivation of bacterium Paracoccus denitrificans has been studied in a horizontal rotating tubular bioreactor (HRTB). After development of a microbial biofilm on the inner surface of the HRTB, conditions for one-step removal of acetate and ammonium ion were created. The effect of bioreactor process parameters [medium inflow rate (F) and bioreactor rotation speed (n)] on the bioprocess dynamics in the HRTB was studied. Nitrite and nitrogen oxides (NO and N₂O) were detected as intermediates of ammonium ion degradation. The biofilm thickness and the nitrite concentration were gradually reduced with increase of bioreactor rotation speed when the medium inflow rate was in the range of 0.5–1.5 l h⁻¹. Further increase of inflow rate (2.0–2.5 l h⁻¹) did not have a significant effect on the biofilm thickness and nitrite concentration along the HRTB. Complete acetate consumption was observed when the inflow rate was in the range of 0.5–1.5 l h⁻¹ at all bioreactor rotation speeds. Significant pH gradient (cca 1 pH unit) along the HRTB was only observed at the highest inflow rate (2.5 l h⁻¹). The results have clearly shown that acetate and ammonium ion removal by P. denitificans can be successfully conducted in a HRTB as a one-step process.     

Isolation and analyses of uranium tolerant <Emphasis Type="Italic">Serratia marcescens</Emphasis> strains and their utilization for aerobic uranium U(VI) bioadsorption

Enrichment-based methods targeted at uranium-tolerant populations among the culturable, aerobic, chemo-heterotrophic bacteria from the subsurface soils of Domiasiat (India’s largest sandstone-type uranium deposits, containing an average ore grade of 0.1 % U₃O₈), indicated a wide occurrence of Serratia marcescens. Five representative S. marcescens isolates were characterized by a polyphasic taxonomic approach. The phylogenetic analyses of 16S rRNA gene sequences showed their relatedness to S. marcescens ATCC 13880 (≥99.4% similarity). Biochemical characteristics and random amplified polymorphic DNA profiles revealed significant differences among the representative isolates and the type strain as well. The minimum inhibitory concentration for uranium U(VI) exhibited by these natural isolates was found to range from 3.5–4.0 mM. On evaluation for their uranyl adsorption properties, it was found that all these isolates were able to remove nearly 90–92% (21–22 mg/L) and 60–70% (285–335 mg/L) of U(VI) on being challenged with 100 μM (23.8 mg/L) and 2 mM (476 mg/L) uranyl nitrate solutions, respectively, at pH 3.5 within 10 min of exposure. his capacity was retained by the isolates even after 24 h of incubation. Viability tests confirmed the tolerance of these isolates to toxic concentrations of soluble uranium U(VI) at pH 3.5. This is among the first studies to report uranium-tolerant aerobic chemoheterotrophs obtained from the pristine uranium ore-bearing site of Domiasiat.     

Interactions of uranyl ion with cytochrome <Emphasis Type="Italic">b</Emphasis><Subscript>5</Subscript> and its His39Ser variant as revealed by molecular simulation in combination with experimental methods

The biological toxicity of uranyl ion (UO₂²⁺) lies in interacting with proteins and disrupting their native functions. The structural and functional consequences of UO₂²⁺ interacting with cytochrome b ₅ (cyt b ₅), a small membrane heme protein, and its heme axial ligand His39Ser variant, cyt b ₅ H39S, were investigated both experimentally and theoretically. In experiments, although cyt b ₅ was only slightly affected, UO₂²⁺ binding to cyt b ₅ H39S with a K _D of 2.5 μM resulted in obvious alteration of the heme active site, and led to a decrease in peroxidase activity. Theoretically, molecular simulation proposed a uranyl ion binding site for cyt b ₅ at surface residues of Glu37 and Glu43, revealing both coordination and hydrogen bonding interactions. The information gained in this study provides insights into the mechanism of uranyl toxicity toward membrane protein at an atomic level.     

Sugar interaction with uranium ion. Synthesis,spectroscopic and stmctural analysis of UO2-sugar complexes containing D-glucuronate moiety

Interaction between D-glucuronic acid and hydrated uranyl salts has been studied in aqueous solution and solid complexes of the type UO₂(D- glucuronate)X·2H₂0 and UO₂(D-glucuronate)₂·2H₂O, where X = CI⁻, Br⁻ or NO₃⁻, are isolated and characterized by means of FT-IR and proton-NMR spectroscopy.On comparison with the structurally identified Ca(D-glucuronate)Br·3H₂O compound, it is concluded that the UO₂²⁺ cation binds to two D- glucuronate moieties in uranylsugar complexes via O6, O5 oxygen atoms (ionized carboxyl group) of the first and O6′, 04 (non-ionized carboxyl group) of the second sugar moiety, whereas in the UO₂(D- glucuronate)₂·2H₂O salt the uranyl ion is bonded to two sugar anions through O6, O6′ oxygen atoms of the ionized carboxyl group, resulting in a six- coordination geometry around the uranium ion. The strong intermolecular hydrogen bonding network of the free acid is rearranged upon sugar metalation and the sugar moiety showed β-anomer conformation both in the free acid and in these uranylsugar complexes.     

Addition of U(VI) to a uranium mining waste sample and resulting changes in the indigenous bacterial community

Based on 16S rRNA gene sequence retrieval, changes in natural bacterial community structure induced by addition of uranyl or sodium nitrate to soil samples from a uranium mining waste pile were investigated. Our results demonstrate that both treatments cause drastic changes in the bacterial composition of the studied samples, resulting in strongly reducing the originally predominant Acidobacteria and Alphaproteobacteria. The addition of sodium nitrate induced a strong propagation of particular denitrifying and nitrate‐reducing populations belonging to Actinobacteria and Bacteroidetes. The treatment of the samples with uranyl nitrate demonstrated that most part of the mentioned Bacteroidetes and some of the actinobacterial populations do not tolerate high U(VI) concentrations. Instead, a strong propagation of Pseudomonas spp. from the Gammaproteobacteria occurred. At the initial stages of incubation (4 weeks after the addition of uranyl nitrate) U(VI)‐reducing Geobacter spp. appeared. However, at the later stages of incubation (14 weeks after the beginning of supplementation) no Geobacter populations were detected anymore. Interestingly, different U‐sensitive Bacteroidetes and alphaproteobacterial populations propagated in the U(VI)‐treated samples at these late stages of incubation. That indicated that the added U(VI) was no longer bioavailable. The drastic changes in bacterial community structure of the soil samples from the depleted uranium mining waste caused by the addition of uranyl nitrate indicate that most of the established indigenous bacterial populations do not tolerate U(VI). By the treatment with uranyl nitrate they are replaced by particular uranium resistant nitrate‐reducing and denitrifying populations that potentially interact with the added radionuclide. On the other hand, the large number of dead uranium‐sensitive bacteria likely liberates phosphate‐rich and other biopolymers capable of binding U(VI). On the basis of our results, we propose that bacteria along with the abiotic soil components such as minerals and humic acids may influence the behaviour of U(VI) in nature.     

On the chemiluminescence in the oxidation of tetravalent uranium to the uranyl ion by dimethyldioxirane

The reaction of the tetravalent uranium [U(IV)] with dimethyldioxirane (DMD) in strongly acidic water–acetone solutions is accompanied by chemiluminescence (CL) in the visible (Vis) and infra‐red (IR) regions. At least three independent reaction pathways are involved in the U(IV)–DMD oxidation: the first entails the non‐chemiluminescent oxidation of U(IV) to the uranyl ion (UO₂²⁺); the second involves the catalytic decomposition of DMD by U(IV) to afford singlet oxygen, as manifested by its characteristic IR‐CL; and in the third process, slow Vis‐CL (510–540 nm) is emitted, following DMD consumption. Copyright © 2002 John Wiley & Sons, Ltd.     

Fungal transformations of uranium oxides

The biogeochemical activities of free-living and symbiotic fungi must be acknowledged in attempts to understand uranium cycling and dispersal in the environment. Although the near-surface geochemistry of uranium is very complex and a wide variety of mineral phases is known, uranium trioxide (UO3) and triuranium octaoxide (U(3)O(8)) can be used as well characterized models in the study of biotransformations. We have used a complex methodological approach involving advanced solid state speciation and scanning electron microscopy to study the ability of saprotrophic, ericoid and ectomycorrhizal fungi to transform these model oxides. This study has revealed that fungi exhibit a high uranium oxide tolerance, and possess the ability to solubilize UO3 and U(3)O(8) and to accumulate uranium within the mycelium to over 80 mg (g dry weight)(-1) biomass. X-ray absorption spectroscopy of uranium speciation within the biomass showed that in most of the fungi the uranyl ion was coordinated to phosphate ligands, but in ectomycorrhizal fungi mixed phosphate/carboxylate coordination was observed. Abundant uranium precipitates associated with phosphorus were found in the mycelium and encrusted the hyphae. Some of the fungi caused the biomineralization of well-crystallized uranyl phosphate minerals of the meta-autunite group. This is the first experimental evidence for fungal transformations of uranium solids and the production of secondary mycogenic uranium minerals.     

ELECTRON STAINS : I. Chemical Studies on the Interaction of DNA with Uranyl Salts

Chemical studies have been carried out on the interaction of DNA with uranyl salts. The effect of variations in pH, salt concentration, and structural integrity of the DNA on the stoichiometry of the salt-substrate complex have been investigated. At pH 3.5 DNA interacts with uranyl ions in low concentration yielding a substrate metal ion complex with a UO₂⁺⁺/P mole ratio of about ½ and having a large association constant. At low pH's (about 2.3) the mole ratio decreases to about ⅓. Destruction of the structural integrity of the DNA by heating in HCHO solutions leads to a similar drop in the amount of metal ion bound. Raising the pH above 3.5 leads to an apparent increase in binding as does increasing the concentration of the salt solution. This additional binding has a lower association constant. Under similar conditions DNA binds about seven times more uranyl ion than bovine serum albumin, indicating useful selectivity in staining for electron microscopy.     

The Polarographic Determination of Phosphate

A method is described for estimating polarographically the amountof phosphate in small volumes of liquid, where the phosphoruscontent lies between 0.5 and 10.5 µg. P/ml. with an errorof ± 0.2 µg. P/ml. even when chloride, nitrate,and sulphate are present in excess. The method is based on precipitationof uranyl phosphate from uranyl acetate and estimation of theuranyl ion left in solution. A comparison is made with the colorimetric method of Berenblumand Chain.     

Detection of biological uranium reduction using magnetic resonance

The conversion of soluble uranyl ions (UO) by bacterial reduction to sparingly soluble uraninite (UO_2(s)) is being studied as a way of immobilizing subsurface uranium contamination. Under anaerobic conditions, several known types of bacteria including iron and sulfate reducing bacteria have been shown to reduce U (VI) to U (IV). Experiments using a suspension of uraninite (UO_2(s)) particles produced by Shewanella putrefaciens CN32 bacteria show a dependence of both longitudinal (T₁) and transverse (T₂) magnetic resonance (MR) relaxation times on the oxidation state and solubility of the uranium. Gradient echo and spin echo MR images were compared to quantify the effect caused by the magnetic field fluctuations ( ) of the uraninite particles and soluble uranyl ions. Since the precipitate studied was suspended in liquid water, the effects of concentration and particle aggregation were explored. A suspension of uraninite particles was injected into a polysaccharide gel, which simulates the precipitation environment of uraninite in the extracellular biofilm matrix. A reduction in the T₂ of the gel surrounding the particles was observed. Tests done in situ using three bioreactors under different mixing conditions, continuously stirred, intermittently stirred, and not stirred, showed a quantifiable T₂ magnetic relaxation effect over the extent of the reaction. Biotechnol. Bioeng. 2012; 109:877–883. © 2011 Wiley Periodicals, Inc.     

Kinetics of uranous ion and ferrous iron oxidation byThiobacillus ferrooxidans

Kinetic constants for the oxidation of uranous and ferrous ions byThiobacillus ferrooxidans were estimated. The kinetics indicate a direct biological mechanism for uranium oxidation. The complex interrelations of ferric, uranyl and uranous ion inhibition are considered.     

Synthesis and characterization of ion‐imprinted resin for selective removal of UO2(II) ions from aqueous medium

In this work, uranyl ion‐imprinted resin based on 2‐(((4‐hydroxyphenyl)amino)methyl)phenol was synthesized by condensation polymerization of its uranyl complex in presence of resorcinol and formaldehyde cross‐linkers. Numerous instrumental techniques including elemental analysis, Fourier transform infrared spectroscopy, ultraviolet, ¹H along with ¹³C nuclear magnetic resonance spectroscopy have been employed for complete characterization of the synthesized ligand and its uranyl complex. Additionally, the obtained ion‐imprinted and non‐imprinted resins were investigated using scanning electron microscope and Fourier transform infrared spectroscopy. The effects of various essential parameters such as pH, temperature and contact time on removal of uranyl ions have been examined, and the results indicated that the obtained resin exhibited the optimum activity at pH 5. Furthermore, the adsorption process was spontaneous at all studied temperatures and followed the second‐order kinetics model. Also, Langmuir adsorption isotherm exhibited the best fit with the experimental results with maximum adsorption capacity 139.3 mg/g. Moreover, the selectivity studies revealed that the ion‐imprinted resin exhibited an obvious affinity toward the uranyl ions in presence of other metal ions compared with the non‐imprinted resin. Copyright © 2015 John Wiley & Sons, Ltd.     

Toxicity of depleted uranium complexes is independent of p53 activity

The p53 tumor suppressor protein is one of the key checkpoints in cellular response to a variety of stress mechanisms, including exposure to various toxic metal complexes. Previous studies have demonstrated that arsenic and chromium complexes are able to activate p53, but there is a dearth of data investigating whether uranium complexes exhibit similar effects. The use of depleted uranium (DU) has increased in recent years, raising concern about DU's potential carcinogenic effects. Previous studies have shown that uranyl acetate and uranyl nitrate are capable of inducing DNA strand breaks and potentially of inducing oxidative stress through free radical generation, two potential mechanisms for activation of p53. Based on these studies, we hypothesized that either uranyl acetate or uranyl nitrate could act as an activator of p53. We tested this hypothesis using a combination of cytotoxicity assays, p53 activity assays, western blotting and flow cytometry. All of our results demonstrate that there is not a p53-mediated response to either uranyl acetate or uranyl nitrate, demonstrating that any cellular response to uranium exposure likely occurs in a p53-independent fashion under the conditions studied.     

The role of sulfate‐reducing bacteria in the deposition of sedimentary uranium ores

The formation of many important sediment‐hosted uranium ore deposits is thought to have resulted from the reduction of relatively soluble uranyl ion—U(VI)—to insoluble uranium (IV) oxides and silicates by aqueous sulfide species. This study focused on the influence that the sulfate‐reducing bacteria Desulfovibrio desulfuricans (ATCC 7757) has on this process. Preliminary studies showed that bacterial growth was not inhibited by concentrations of uranyl ion up to 100 mg U per liter. More detailed studies showed that sulfate‐reducing bacteria have an influence on uranyl ion removal beyond the simple production of the aqueous sulfide reductant. Comparative studies of bacterial cultures containing high densities of the sulfate reducers with bacterial cell‐free but otherwise identical media showed that the bacteria themselves enhance uranium removal from solution. At pH 8.0, no reaction was observed in H₂S‐bearing cell‐free media, whereas at the same H₂S concentration, the uranyl ion decreased markedly in the presence of the bacteria. At pH 7.0, some uranium removal occurred in the absence of bacteria, but it was much more rapid in their presence. We postulate that these effects are due to the ability of bacterial cell walls to adsorb uranium. Adsorption to surfaces is known from independent studies to enhance uranium reduction, and evidently this two‐step adsorption‐reduction mechanism is occurring in our experiments. We conclude that sulfate‐reducing and other bacteria may play a significant role in the geochemical cycling of uranium.     

Evaluation of terrestrial plants extracts for uranium sorption and characterization of potent phytoconstituents

Sorption capacity of four plants (Funaria hygrometrica, Musa acuminata, Brassica juncea and Helianthus annuus) extracts/fractions for uranium, a radionuclide was investigated by EDXRF and tracer studies. The maximum sorption capacity, i.e., 100% (complete sorption) was observed in case of Musa acuminata extract and fractions. Carbohydrate, proteins, phenolics and flavonoids contents in the active fraction (having maximum sorption capacity) were also determined. Further purification of the most active fraction provided three pure molecules, mannitol, sorbitol and oxo-linked potassium oxalate. The characterization of isolated molecules was achieved by using FTIR, NMR, GC-MS, MS-MS, and by single crystal-XRD analysis. Of three molecules, oxo-linked potassium oxalate was observed to have 100% sorption activity. Possible binding mechanism of active molecule with the uranyl cation has been purposed.     

Monoclonal antibody production: viability improvement of RC1 hybridoma cell in different types of bioreactor

The study was done to improve the viability of the RC1 hybridoma cell in order to produce more amount of monoclonal antibody (mAb). By using the optimized media, the cell had been cultured in two bioreactor systems which were the MiniPerm and Stirred Tank bioreactor (ST bioreactor), and the results were compared to the one obtained by using the T-Flask bioreactor which was used as a standard. The results showed that the ST bioreactor was able to improve the viability of the cell to the value of 91.8% which was a little bit better than the one obtained by the MiniPerm bioreactor (88.6%) and far better than that of achieved by the T-Flask bioreactor (76.4%). This was well correlated with the good growth performance of the cell in the ST bioreactor with the specific growth rate (μ) value of 0.0289 h⁻¹ followed by MiniPerm bioreactor with the value of 0.0243 h⁻¹ and then the T-Flask with the value of 0.0151 h⁻¹. The low value of doubling time (t _d ) obtained in the ST bioreactor (24 h) compared to the one obtained in the MiniPerm (29 h) and T-Flask bioreactor (46 h) had also contributed to the higher value of cell viability. As a result a higher concentration of mAb was able to be produced by the ST bioreactor (0.42 g l⁻¹) compared to that of the MiniPerm (0.37 g l⁻¹) and T-Flask bioreactor (0.23 g l⁻¹).     

Bioremediation of uranium-bearing wastewater: biochemical and chemical factors influencing bioprocess application

A biotechnological process for the removal of heavy metals from aqueous solution utilizes enzymatically liberated phosphate ligand which precipitates with heavy metals (M) as cell-bound MHPO(4). The enzyme, a phosphatase, obeys Michaelis-Menten kinetics in resting and immobilized cells; an integrated form of the Michaelis-Menten equation was used to calculate the apparent K(m) (K(m app.)) as operating in immobilized cells in flow-through columns by a ratio method based on the use of two enzyme loadings (E(o1), E(o2)) or two input substrate concentrations (S(o1), S(o2)). The calculated K(m app.) (4.08 mM) was substituted into an equation to describe the removal of metals by immobilized cells. In operation the activity of the bioreactor was in accordance with that predicted mathematically, within 10%. The initial tests were done at neutral pH, whereas the pH of industrial wastewaters is often low; an increase in the K(m app.) at low pH was found in previous studies. Immobilized cells were challenged with acidic mine drainage wastewaters, where the limiting factors were chemical and not biochemical. Bioreactors initially lost activity in this water, but recovered to remove uranyl ion with more than 70% efficiency under steady-state conditions in the presence of competing cations and anions. Possible reasons for the bioreactor recovery are chemical crystallization factors. (c) 1997 John Wiley & Sons, Inc.