Mitosis with undivided chromosomes

Summary Cases of cell division with single chromatids are discussed in connection with a study on mitosis with undivided chromosomes made on living material of the endosperm of Haemanthus katharinae. Such divisions are known from certain abnormal mitoses in the microspores of a few plant species, and also from the second meiotic division, in which it is possible in numerous materials to study the behaviour of daughter univalents, and, in a few cases, also daughter chromosomes derived from chromosomes that were paired during the first division.The various cases of mitosis with single chromatids show a great variation with respect to the degree of scattering of the chromosomes over the spindle at metaphase. In a few cases there is practically no tendency to form a metaphase plate. In other cases the tendency to form such a plate is more or less pronounced, but also in these cases it is difficult for the chromosomes to form this arrangement. Some of them remain scattered over the spindle. After the metaphase a kind of anaphase usually follows in which the single chromatids, without division, move to the poles, often with other chromosomes lagging in intermediate positions.An approach of chromosomes to the poles may be caused by two different mechanisms in mitoses of this kind and only in a few cases is the information sufficient to show that active centromere movements occur during these anaphases.In many aspects of their behaviour on the spindle, single chromatids are similar to ordinary univalents of the first meiotic division. For this reason the movement mechanics of the chromosomes of the first meiotic division is briefly reviewed.The interpretation is expressed that the structure of the centromere region of a single chromatid shows some similarity to that of a univalent of the first meiotic division and that this may be the reason for their similar behaviour. The chromatid centromere would have a structural multiplicity with respect to its kinetic elements, corresponding to its subdivision in half-chromatids and also to the presence of two or three consecutive chromomeres in its longitudinal direction. As these kinetic elements are arranged close to one another on one side of the narrow cylinder of the centromere constriction, it is difficult for them to orient, towards both poles simultaneously. A single chromatid having a centromere of this kind will show orientation instability and change its orientation between the two unipolar orientations and various more or less bipolar orientations. The movements following these different orientations would cause the scattering of these single chromatids over the spindle. The orientation of ordinary mitotic metaphase chromosomes, consisting of two such chromatids, could often be the consequence of a process of co-orientation similar to that in meiotic bivalents.The anaphase movement of undivided chromosomes, which by active centromere movements are shifted in the polar directions without a separation of daughter components, is discussed with reference to a similar behaviour observed by Dietz in multivalents in Ostracods. These multivalents are stabilized in the equator during metaphase, in spite of the fact that they have two or three centromeres directed towards one pole and a single one towards the other. During anaphase their chromosomes do not separate but the whole configurations are shifted towards that pole towards which the majority of the centromeres are directed (this is followed by another type of movement which does not concern us in this connection). Undivided chromosomes that are oriented with more of their kinetic material towards one of the poles and less towards the other should by the same mechanisms as moved the multivalents be shifted in the equatorial direction during metaphase and in the polar direction during anaphase. The mechanism of these events is obscure. A change in the interpretation given by Dietz is suggested.This paper is dedicated to Professor Franz Schrader on the occasion of his seventieth birthday.     

New recombination methods for Sinorhizobium meliloti genetics

The availability of bacterial genome sequences has created a need for improved methods for sequence-based functional analysis to facilitate moving from annotated DNA sequence to genetic materials for analyzing the roles that postulated genes play in bacterial phenotypes. A powerful cloning method that uses lambda integrase recombination to clone and manipulate DNA sequences has been adapted for use with the gram-negative alpha-proteobacterium Sinorhizobium meliloti in two ways that increase the utility of the system. Adding plasmid oriT sequences to a set of vehicles allows the plasmids to be transferred to S. meliloti by conjugation and also allows cloned genes to be recombined from one plasmid to another in vivo by a pentaparental mating protocol, saving considerable time and expense. In addition, vehicles that contain yeast Flp recombinase target recombination sequences allow the construction of deletion mutations where the end points of the deletions are located at the ends of the cloned genes. Several deletions were constructed in a cluster of 60 genes on the symbiotic plasmid (pSymA) of S. meliloti, predicted to code for a denitrification pathway. The mutations do not affect the ability of the bacteria to form nitrogen-fixing nodules on Medicago sativa (alfalfa) roots.     

Xenopus: an ideal system for chemical genetics

Chemical genetics, or chemical biology, has become an increasingly powerful method for studying biological processes. The main objective of chemical genetics is the identification and use of small molecules that act directly on proteins, allowing rapid and reversible control of activity. These compounds are extremely powerful tools for researchers, particularly in biological systems that are not amenable to genetic methods. In addition, identification of small molecule interactions is an important step in the drug discovery process. Increasingly, the African frog Xenopus is being used for chemical genetic approaches. Here, we highlight the advantages of Xenopus as a first-line in vivo model for chemical screening as well as for testing reverse engineering approaches.     

New type of linker useful for cloning experiments

A new class of linker oligodeoxynucleotide sequences is described which allows the original sequence of a foreign DNA to be restored after cloning. In the standard linker approach the terminal base pairs of the linker-sequences are irreversibly attached to the cloned DNA, thus altering the genetic information. The use of the new type of linker is demonstrated by the transformation of the unique Pvu II site in pBR322 into Bam HI site using the ISO ('in-site-out') linker d(GATCCGGATC). Possible further applications of these linker sequences are described.     

New thinking on animal experiments

Animal experimentation is a perennial issue for many researchers, legislators and critics. A group of Britain's most senior politicians has now recommended changes to the country's rules, some of the strictest in the world, and others in Europe are thinking about future directions. Nigel Williams reports.     

Compensation: an alternative method for analyzing diversity-productivity experiments

Although recent experimental results demonstrate a positive effect of diversity on primary productivity, the interpretation of these experiments has been controversial, creating a need for new methods of analysis. The methods developed in response to this need all use the production of individual species grown in monocultures to calculate the expected production of each species mixture, then analyze departures from these expectations as a function of species richness. We propose an alternative method that treats the same assembly experiments as species removals, and calculates the expected production of each mixture based on the production of individual species when grown together in the full community (the experimental mixture containing all species in the pool). Using the observed production of the full community, and the observed and expected productions of less diverse mixtures, we calculate an index of compensation that measures the degree of functional recovery following species loss. To explore whether losses of dominant versus subordinate species have different ecosystem effects, we suggest a multiple regression approach that tests the influence of both species richness and expected production on compensation. If compensation varies with species richness or expected production consistently in many experimental systems, then we may be able to predict the ecosystem effect of different types of extinctions.
While existing monoculture approaches more directly test hypotheses about complementary resource use, the compensation approach offers two advantages: 1) it is more appropriate for testing how extinctions will affect ecosystem function, and 2) it may provide an important link between assembly experiments in artificial communities and removal experiments in natural systems.     

Population genetics from an information perspective

Some basic effects of population genetics are derived governing the occurrences of alleles A(i)and genotypes A(i)A(j)among its members. A principle of extreme physical information (EPI) is used. These effects are (1) the equation of genetic change, (2) Fisher's theorem of partial change, (3) a new uncertainty principle, and (4) the monotonic decrease of Fisher information with time, indicating increased disorder for the population. General conditions of population change are allowed: fitness coefficients w(ij)generally changing with time [except in effect (2)], population randomly or non-randomly mating, and a general number of loci present within each chromosome. EPI is a practical tool for deriving probability laws. It is an outgrowth of a physical process that occurs during any act of measurement. Here the measurement is the random observation of a genotype A(i)A(j). This observation is to be used to estimate the time of the observation, called "evolutionary time". The measurement activity incurs errors in the estimated observation time and fitness value of the observed genotype. By the Cramer-Rao inequality, the product of the two uncertainties must exceed unity [effect (3)]. The Fisher information I in data space is postulated to originate in the space of the genotype where it had some generally larger value J. The EPI principle extremizes the loss of information (I--J) with I=1/2 J. The solution gives rise to effects (1) and (2). Finally, it is shown that effect (4) holds when the population approaches an equilibrium state, e.g. for time values greater than a threshold if fitness coefficients w(ij)are constant. EPI provides a common framework for deriving physical laws and laws of population genetics. The new effects (3) and (4) are confirmed through computer simulation.     

Monte Carlo experiments and the defense of diffusion models in molecular population genetics

In the 1960s molecular population geneticists used Monte Carlo experiments to evaluate particular diffusion equation models. In this paper I examine the nature of this comparative evaluation and argue for three claims: first, Monte Carlo experiments are genuine experiments: second, Monte Carlo experiments can provide an important meansfor evaluating the adequacy of highly idealized theoretical models; and, third, the evaluation of the computational adequacy of a diffusion model with Monte Carlo experiments is significantlydifferent from the evaluation of the emperical adequacy of the same diffusion model.     

New experiments of biotin enzymes.

The objects of structural studies on biotin-enzymes were acetyl CoA-carboxylase and pyruvate carboxylase of Saccharomyces cerevisiae and beta-methylcrotonyl CoA-carboxylase and acetyl CoA-carboxylase of Achromobacter IV S. It was found that these enzymes can be arranged in three groups. In the first group, as represented by acetyl CoA-carboxylase of Achromobacter, the active enzyme could be resolved in three types of functional components: (1) the biotin-carboxyl carrier protein, (2) the biotin carboxylase, and (3) the carboxyl transferase. In the second group, as represented by beta-methylcrotonyl CoA-carboxylase from Achromobacter only two types of polypeptides are present. The one carries the biotin carboxylase activity together with the biotin-carboxyl-carrier protein, the other one carries the carboxyl transferase activity. In this third group, as represented by the two enzymes of yeast, all three catalytic functions are incorporated in one multifunctional polypeptide chain. The evolution of the different enzymes is discussed. The animal tissues acetyl CoA-carboxylase is under metabolic control, as known from previous studies. It thus has to be expected that the levels of malonyl CoA in livers of rats in all states of depressed fatty acid synthesis are much lower than under normal conditions because the carboxylation of acetyl CoA is strongly reduced and cannot keep pace with the consumption of malonyl CoA by fatty acid synthetase. A new highly sensitive assay method for malonyl CoA was developed which uses tritiated NADPH and measures the incorporation of radioactivity into the fatty acids formed from malonyl CoA in the presence of purified fatty acid synthetase. The application of this method to liver extracts showed that the level of malonyl CoA which amounts to about 7 nmoles per gram of wet liver drops to less than 10% within a starvation period of 24 hr and even further if the starvation period is extended to 48 hr. A low malonyl CoA concentration is also found in the alloxan diabetic animals and in animals being fed a fatty diet after starvation. On the other hand, feeding a carbohydrate rich diet leads to malonyl CoA levels surpassing the levels found after feeding a balanced diet. These observations reconfirm the concept that fatty acid synthesis is principally regulated by the carboxylation of acetyl CoA.