双向电泳和质谱技术分析樟芝无性孢子萌发相关蛋白

【目的】采用双向电泳(2DE)、质谱技术和实时荧光定量PCR(RT-q PCR)技术分析樟芝无性孢子萌发相关蛋白。【方法】分别提取培养0 h和24 h的樟芝孢子总蛋白并进行双向电泳分离,再用PDQuest软件进行差异蛋白分析,并用MALDI-TOF-MS技术对差异蛋白进行鉴定;其次将鉴定成功的蛋白与孢子萌发相关蛋白的本地数据库进行比对,获得樟芝中的孢子萌发相关蛋白信息,最后用RT-qPCR技术对相关基因的转录水平进行分析。【结果】两组样品共有32个差异蛋白点,其中在24 h表达量上调的蛋白25个,下调的蛋白7个。将32个差异蛋白点挖取鉴定,成功鉴定24个。其中,与孢子萌发相关的蛋白有10个,分别为GerO、Ubc1、Cat-1、Snf1、Cas2、SfaD、Chaperonin、Fad5、Tyrosine-P和ChiA。【结论】该研究结果为进一步解析樟芝无性孢子萌发的分子机制提供了理论依据。     

Subunits polypeptide composition of Rubisco in Avena species

Abstract

Rubisco was extracted and purified from leaves of nineteen Avena species. The holoenzyme shows the already known “slow” and “fast” forms after native electrophoresis. The electrophoresis in denaturing conditions revealed a unique polypeptide for the large subunit and two types of polypeptides for the small subunit. The addition of leupeptin, a thiol proteinase inhibitor, during purification of the holoenzyme, reduced microheterogeneity within both subunit types. Subunit composition of the enzyme appears to be a taxonomic tool for distinguishing three species: A. clauda Dur., A. eriantha Dur. and A. canariensis Baum. Rajh. et Baum.     

The Characterization of Cell Death Induced by 1-(3-C-Ethynyl-β-D-ribo-Pentofuranosyl)Cytosine (ECyd) in FM3A Cells

Abstract

The characterization of cell death induced by 1-(3-C-ethynyl-β-D-ribo-pentofuranosyl)cytosine(ECyd), a potent inhibitor of RNA synthesis, was performed using mouse mammary tumor FM3A cells in vitro. Accompanied with the cell death induced by ECyd (3.0 μM)-treatment, about 100–200 kbp-sized and internucleosomal DNA fragmentation were observed by orthogonal-field-alternation gel electrophoresis (OFAGE) and conventional gel electrophoresis, respectively. Protease inhibitors, carbobenzoxy-L-aspart-1-yl[(2,6-dichlorobenzoyl)oxy]methane (Z-Asp-CH₂-DCB), Nα-p-tosyl-L-lysine chloromethyl ketone (TLCK) and N-p-tosyl-L-phenylalanine chloromethyl ketone (TPCK), effectively blocked the cell death, suggesting that the proteases inhibited by Z-Asp-CH₂-DCB, TLCK or TPCK were involved in the process of the cell death.     

苏云金芽胞杆菌Sigma54和CcpA共同调控的基因鉴定

【目的】通过综合分析苏云金芽胞杆菌(Bacillus thuringiensis)HD73菌株Sigma54缺失突变体的转录组数据和蜡样芽胞杆菌(Bacillus cereus)ATCC 14579菌株CcpA缺失突变体的转录组数据,并进行启动子与CcpA蛋白的体外结合验证,明确Bt HD73菌株中Sigma54和CcpA共同调控的基因,丰富了对微生物的代谢调控网络的认识。【方法】以转录组测序结果为基础,通过基因同源性的比对在Bt HD73菌株中寻找受Sigma54和CcpA共同调控的基因,在这些基因中找到具有cre序列的启动子,通过凝胶阻滞验证这些启动子与CcpA蛋白的结合。【结果】Bt HD73菌株中有31个基因受Sigma54和CcpA共同调控,其中14个基因的启动子序列包含cre序列,这些启动子都可以与CcpA蛋白发生体外结合。【结论】Bt HD73菌株中有14个基因直接受CcpA的调控,同时其转录受Sigma54的控制。     

Studies on bacterial esterases

Summary From a cell-free enzyme solution ofPs. aeruginosa lipase and ali-esterase were separated by means of paper electrophoresis. Part I: Antonie van Leeuwenhoek32, 241, 1957.     

Comparative immunological and electrophoretic studies on ribosomal proteins of Bacillaceae

Summary The ribosomal proteins from several Bacillus species were compared by two-dimensional gel electrophoresis and immunological methods. The results revealed great heterogeneity among most Bacillus species. Comparison of ribosomal proteins from Bacilli with those of E. coli by two-dimensional gel electrophoresis showed little similarities, while structural homologies could be found by immunological methods. SDS two-dimensional gel electrophoresis revealed that the molecular weight of ribosomal proteins is conserved in all tested bacteria.Paper No. 68 on Ribosomal Proteins. Preceding paper is by Geisser et al., Molec. gen. Genet. 127, 111–128 (1973).     

纯化标签的不同位置对Δ6脂肪酸脱饱和酶异源表达的影响

【背景】目前利用酵母表达系统已鉴定了多种物种中的Δ6脂肪酸脱饱和酶(FADS6)。由于FADS6是一种具有多个跨膜螺旋的膜蛋白,使得其大量表达和纯化具有挑战性。【目的】探索FADS6的高效表达策略,研究纯化标签添加的位置对高山被孢霉FADS6I (Ma FADS6I)重组表达效率的影响。【方法】在毕赤酵母表达载体中插入串联亲和标签HRV 3C-Protein A-His,利用改造后的载体构建带有N端或C端标签的Ma FADS6I表达载体;通过电转化获得毕赤酵母重组表达菌株;利用斑点印迹杂交(DotBlot)、聚丙烯酰胺凝胶电泳(SDS-PolyacrylamideGelElectrophoresis,SDS-PAGE)和免疫印迹(Western Blot)分析重组蛋白的表达水平,并利用气相色谱-质谱(Gas Chromatography-Mass Spectrometry,GC-MS)分析检测Ma FADS6I催化生成的脂肪酸。【结果】通过大量的毕赤酵母转化子筛选,最终获得高效表达Ma FADS6I的毕赤酵母重组菌,证实各转化子的表达具有差异性,Ma FADS6I的C端带有纯化标签较N端更有利于表达。【结论】在Ma FADS6I的C端添加纯化标签比在N端添加更有利于该蛋白在酵母系统中的表达以及底物的转化,为进一步探究FADS6高效表达和结构功能奠定了基础。     

Cytosolic ascorbate peroxidase in Gymnosperms

ABSTRACT

Sixteen species of Gymnosperms have been screened for cytosolic ascorbate peroxidase by means of native polyacrylamide gel electrophoresis. This analysis shows that a single form of the enzyme is the most common situation. The enzyme reveals a similar electrophoretic mobility in species belonging to the same genus and sometimes to different genera. In some Pinaceae, two bands of activity were observed. The presence in the archaic spermatophyte Ginkgo biloba, as well as in the more advanced monocotyledons, of three isoforms of ascorbate peroxidase, might suggest that three different cytosolic ascorbate peroxidase genes were already present in this archaic species.     

肠道中乳酸杆菌属特异性定量引物的筛选及验证

【目的】乳酸杆菌与人和动物的健康有密切关系,它的存在及含量变化可以作为评价宿主健康的指标之一。在乳酸杆菌定量研究中,特异性引物往往是定量成功的关键。然而,已有引物质量参差不齐,难以保证其特异性。本文旨在通过理论与试验的方法快速筛选出用于定量的乳酸杆菌属特异性引物,同时为今后引物筛选和设计提供理论基础。【方法】查阅文献、挑选出12对基于16S rRNA基因序列设计的乳酸杆菌属引物,通过MEGA 6.0软件确定引物相对位置,计算引物匹配率,以引物相对位置和匹配率为依据重新组合引物,获得理论特异性乳酸杆菌属引物,再通过琼脂糖凝胶电泳和QX200Droplet Digital PCR系统对新组合引物的特异性进行检验。【结果】通过理论与试验相结合的方法确定了一对特异性较好的乳酸杆菌属定量引物Lab1,它的扩增产物大小约300 bp。ddPCR系统检验结果发现其特异性和灵敏性较好,还可以有效定量粪便中的乳酸杆菌。【结论】引物设计理论结合特异性试验这种方法可以快速有效地筛选出特异性较好的引物,同时为今后引物筛选和设计提供理论基础。     

Dna Sequencing After the Human Genome Project

Abstract

In future DNA sequencing, gel electrophoresis, which is particularly effective for de novo sequencing, is likely to be replaced by sequencing by hybridization, mass spectrometry, or combinations of these two methods, which are particularly effective for comparative or diagnostic sequencing.     

Identification of methionine oxidation in human recombinant erythropoietin by mass spectrometry: Comparative isoform distribution and biological activity analysis

Background: Oxidative degradation of human recombinant erythropoietin (hrEPO) may occur in manufacturing process or therapeutic applications. This unfavorable alteration may render EPO inefficient or inactive. We investigated the effect of methionine/54 oxidative changes on the amino acid sequences, glycoform distribution and biological activity of hrEPO. Methods: Mass spectrometry was applied to verify the sequence and determine the methionine oxidation level of hrEPO. Isoform distribution was studied by capillary zone electrophoresis method. In vivo normocythemic mice assay was used to assess the biological activity of three different batches (A, B, and C) of the proteins. Results: Nano-LC/ESI/MS/MS data analyses confirmed the amino acid sequences of all samples. The calculated area percent of three isoforms (2–4 of the 8 obtained isoforms) were decreased in samples of C, B, and A with 27.3, 16.7, and 6.8% of oxidation, respectively. Specific activities were estimated as 53671.54, 95826.47, and 112994.93?mg/mL for the samples of A, B, and C, respectively. Conclusion: The observed decrease in hrEPO biological activity, caused by increasing methionine oxidation levels, was rather independent of its amino acid structure and mainly associated with the higher contents of acidic isoforms.     

18. Isolation of a Cytoplasmic Polyhedrosis Virus by Physical and Immunological Techniques

ABSTRACT

Procedures are described for the separation and purification of cytoplasmic polyhedrosis viruses obtained from multiply infected Heliothis armigera larvae. Separation was achieved by differential centrifugation and density gradient zone electrophoresis followed by complexing with nuclear polyhedrosis virus specific antibody. The yield of cytoplasmic polyhedrosis virus was increased by passage in larvae reared on synthetic media.     

Sulfolobus acidocaldarius DNA聚合酶IV跨越损伤合成能力的酶学特征

[目的]以嗜酸嗜热硫化叶菌Sulfolobus acidocaldarius的DNA聚合酶IV （Saci_0554）为例,表征其跨越模板上损伤碱基的DNA合成效果。[方法]将DNA聚合酶IV （SacpolIV）在大肠杆菌中进行重组表达,经亲和层析纯化得到SacpolIV蛋白;利用人工合成的带有不同损伤的寡核苷酸片段作为模板DNA,用尿素变性聚丙烯酰胺凝胶电泳技术,鉴定SacpolIV在体外跨越各种损伤碱基进行跨损伤合成的催化能力。[结果]SacpolIV重组蛋白能够不同程度地跨越嘌呤和嘧啶损伤,跨越能力的高低取决于损伤碱基与正常碱基形成氢键的能力。本研究还发现,SacpolIV能够在DNA链中掺入核糖核苷酸,但掺入核糖核苷酸的效率低于脱氧核糖核苷酸。[结论]本研究证实SacpolIV具有很强的跨越损伤合成能力,能够跨越多种氢键配对能力减弱的损伤碱基,为其在细胞内的跨越损伤合成功能提供了生化证据。     

人源脂肪酸合酶在酿酒酵母中的表达纯化和结构的初步分析

[背景] 聚酮类化合物在医药领域有重要的应用,相关药物研发依赖聚酮合酶多变的结构认知,人源脂肪酸合酶的组成结构和催化机制与聚酮合酶相近,研究人源脂肪酸合酶结构可为聚酮合酶的研究奠定基础。[目的] 在酿酒酵母中表达纯化人源脂肪酸合酶蛋白,确定合适的体外纯化条件。[方法] 以酿酒酵母BJ5464为表达载体,构建带有His和Strep双亲和层析标签的重组质粒,诱导表达蛋白后用亲和层析方法获取目标蛋白,并结合凝胶电泳和快速蛋白质液相层析技术,确定合适的蛋白纯化条件。[结果] 成功构建重组表达质粒pxw55-hfas-cSHII, 并在体外纯化得到合适浓度和纯度的人源脂肪酸合酶蛋白,筛选不同缓冲液条件并结合电子显微镜观察结果反馈,确定合适的蛋白体外纯化体系。[结论] 蛋白电镜结构分析需要有高纯度、合适浓度并且形成正确构象的蛋白样品,而人源脂肪酸合酶蛋白纯化体系的建立和纯化条件的确定为其电镜结构分析提供了良好的样品,为人源脂肪酸合酶的结构解析及结构相似但更为复杂的聚酮合酶蛋白解析奠定了良好基础。     

乌梅提取物对溶藻弧菌的抑制效应与机理

[背景] 溶藻弧菌（Vibrio alginolyticus）能够感染鱼、虾、贝等海洋经济动物,给海水养殖业带来了严重的经济损失,对公众健康及食品安全也构成较大威胁。[目的] 通过研究乌梅（Fructus mume）对溶藻弧菌的抑菌效应及其机理,为乌梅在水产养殖中的进一步开发利用提供理论依据。[方法] 采用试管二倍稀释法测定乌梅提取物（Fructus mume Extract,FME）对溶藻弧菌的最小抑菌浓度（Minimal Inhibitory Concentration,MIC）和最小杀菌浓度（Minimum Bactericidal Concentration,MBC）,电导率仪检测溶藻弧菌的相对电导率,分光光度法分析溶藻弧菌的核酸泄露和呼吸链脱氢酶活性及生物膜抑制率,蛋白质电泳检测溶藻弧菌的蛋白质合成情况,扫描电子显微镜观察溶藻弧菌的亚显微结构。[结果] 乌梅提取物对溶藻弧菌的MIC和MBC分别为1.953 mg/mL和3.906 mg/mL;乌梅提取物显著增加了溶藻弧菌的相对电导率和核酸泄露,明显降低了溶藻弧菌蛋白质的合成能力,对于弧菌的亚显微形态产生了较大影响。同时乌梅提取物显著抑制了溶藻弧菌生物膜的形成和呼吸链脱氢酶的活性。[结论] 乌梅提取物通过增加溶藻弧菌细胞膜通透性及显著抑制生物膜的生成、呼吸链脱氢酶活性及蛋白质的合成,实现抑制及杀灭溶藻弧菌的目的。     

13th Annual Biotechnology Congress (BAC Madrid 2019): abstract collection

Background

Tobacco stalk (TS), a major agricultural waste abundant in pectin, has resulted in concerns about the need for its reuse. The nicotine in TS is considered a chemical that is to\xic and hazardous to the environment.

Results

In this study, Bacillus tequilensis CAS-MEI-2-33 was isolated from cigar wrappers to produce alkaline pectinase using TS. Subsequently, the medium and fermentation conditions for the production of pectinase by B. tequilensis CAS-MEI-2-33 were optimized. The optimal fermentation period, pH of the initial fermentation medium, concentration of TS, and inoculum amount for B. tequilensis CAS-MEI-2-33 were 40 h, 40 g/L, 7.0, and 3%, respectively. Under optimal conditions, the pectinase activity was 1370 U/mL. Then, the enzymatic properties, such as the optimum pH, reaction temperature, temperature stability, and effects of metal ions, were studied. The optimal pH was determined to be 10.0, indicating that the enzyme was an alkaline pectinase. The optimal temperature was 40 °C, and pectinase activity was stable at 40 °C. The Ag⁺ metal ions were shown to remarkably promote enzyme activity. The pectinase was partly purified by ammonium sulfate precipitation, ion exchange chromatography, and Sephacryl S-100 chromatography. Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and LC-MS/MS analyses were utilized to analyze the pectinase.

Conclusions

This study provided a new alkaline pectinase candidate and a new strategy for the use of TS.

     

A phloem-specific,lectin-like protein is located in pine sieve-element plastids by immunocytochemistry

Two co-purifying phloem polypeptides of 24 and 25 kilodaltons (kDa) were isolated from homogenates of Pinus sabiniana Dougl. phloem by differential centrifugation, selective solubilization and electrophoresis, and rabbit antibodies raised against them. The antisera were found to be specific for doublet bands between 23 and 25 kDa in Western blots of whole phloem extracts of Pinus species; no xylem polypeptides were labelled, nor did labelling occur in blots of phloem extracts from other genera in the Pinaceae. Solubilized phloem polypeptides bind strongly to chitin (oligomeric N-acetylglucosamine) columns and are sensitive to thiol reagents, both characteristics which relate them to phloemspecific lectins isolated from angiosperm species (C. Allen, 1979, Biochem. J. 183, 133–137; A.K. Gietl et al., 1979, Planta 144, 367–371). Fluorescence microscopy and immuno-gold electron microscopic cytochemistry demonstrated antigenic sites specifically associated with protein crystals peculiar to the sieve-element plastids of the Pinaceae.Abbreviations DAB diamino benzidine tetrachloride - FITC fluorescein isothiocyanate - kDa kilodalton - PBS phosphate-buffered saline - PP phloem polypeptide(s) - SDS-PAGE Sodium dodecyl sulphate-polyacrylamide gel electrophoresis - Tris 2-amino-2-(hydroxymethyl)-1,3-propanediol     

Observations on the haematology and oxygen transport of the New Zealand fur seal,Arctocephalus forsteri

Abstract

Red cell count, haemoglobin concentration, haematocrit, mean cell volume, and mean cell haemoglobin concentration were recorded for the fur seal Arctocephalus forsteri (Lesson). The data did not indicate haematological adaptations for deep diving nor for extended periods of submergence. Two distinct haemoglobin types were isolated from the red cells by electrophoresis. The oxygen affinity of the blood was low as measured by half-saturation values (p50) of 42.3 mm Hg at pH 7.1 and 26.2 mm Hg at pH 7.4 and 37°c. The low oxygen affinity was mediated by erythrocytic 2,3-diphosphoglycerate, and on this basis a high turnover of oxygen to the tissues is postulated. The role of the blood in oxygen transport appears to be suited for feeding near the surface rather than by deep diving.     

Proteins and chlorophyllase activity in Hedera helix L. with green or variegated leaves

Abstract

Chlorophyllase activity and photosynthetic membrane proteins of two lots of Hedera helix were studied. Both the HV variety with variegated leaves and HC variety with green leaves were observed. Proteins from green, white and white-green portions of leaves differing in age were compared using dodecyl-sulfate-polyacrylamide gel electrophoresis. The white or white-green regions of Hedera helix var. aureomarginata (HV) did not differ significantly in chlorophyllase activity.     

MALDI-TOF Mass Spectrometry as a Powerful Tool to Study Enzymatic Processing of DNA Lesions Inserted into Oligonucleotides

Abstract

MALDI-TOF mass spectrometry measurements, coupled with either exonuclease or DNA N-glycosylases digestions of lesion-containing oligonucleotides, were used to assess biochemical features of several oxidative DNA damage. The latter analytical approach was shown to be an informative and efficient alternative technique to conventional electrophoresis and chromatographic analyses.