Screening and identification of female-specific DNA sequences in octaploid sturgeon using comparative genomics with high-throughput sequencing

In this study, six candidate female-specific DNA sequences of octaploid Amur sturgeon (Acipenser schrenckii) were identified using comparative genomic approaches with high-throughput sequencing data. Their specificity was confirmed by traditional PCR. Two of these sex-specific sequences were also validated as female-specific in other eight sturgeon species and two hybrid sturgeons. The identified female-specific DNA fragments suggest that the family Acipenseridae has a ZZ/ZW sex-determining system. However, one of the two DNA sequences has been deleted in some sturgeons such as Sterlet sturgeon (Acipenser ruthenus), Beluga (Huso huso) and Kaluga (H. dauricus). The difference of sex-specific sequences among sturgeons indicates that there are different sex-specific regions among species of sturgeon. This study not only provided the sex-specific DNA sequences for management, conservation and studies of sex-determination mechanisms in sturgeons, but also confirmed the capability of the workflow to identify sex-specific DNA sequences in the polyploid species with complex genomes.     

Organization of the diencephalon ventrothalamic area in the sturgeons

Cytoarchitectonics of ventrothalamic area of the diencephalon of the sturgeons was studied in four species of the sturgeons, the great sturgeon Huso huso L., the Kura sturgeon Acipenser guelden-staedtii persicus n. Kurensis Belyaeff, the Caspian sturgeon, Ac. stellatus Pall., and the barbel sturgeon Ac. nudioventris Lov. using Nissl staining and Bilschowski impregnation techniques in Viktorov’s modification. The ventral thalamus of the sturgeons was found to include seven nuclei: ventromedial, ventrolateral, intermediate and ventral thalamic nuclei, thalamic eminence, and nuclei of ventral and medial optic tracts. The main attention was paid to comparative analysis of this area in the sturgeons and other actinopterygian fish. The structures common to all ray-finned fish or only to the lower teleosts and ganoids as well as characterizing only the sturgeons.     

Impact of the Alien Species <Emphasis Type="Italic">Mnemiopsis leidyi</Emphasis> A. Agassiz, 1865 on Fish of the Caspian Sea

The data of long-term ecological studies (1999–2014) are used for assessing the impact of a new Caspian invader Mnemiopsis leidyi A. Agassiz, 1865 on marine and anadromous fish species. The introduction of the ctenophore and its massive development in the Caspian Sea have mainly affected planktophagous fish, especially the most abundant species anchovy sprat (Clupeonella engrauliformis Borodin, 1904) and sturgeons (Family Acipenseridae). Mnemiopsis leidyi is one of the main negative factors preventing the restoration of the populations of Caspian fishes, especially anchovy tyulka. The critical state of the resources of the spawning parts of sturgeon populations (Family Acipenseridae) has been reinforced as a result of the massive development of M. leidyi.     

Osmotic and ion regulation in different species of acipenserids (acipenseriformes, acipenseridae)

Species specificity of osmotic and ion regulation in five species of acipenserids connected in varying degrees with sea conditions is investigated. The objects of study were freshwater middle-Volga sterlet Acipenser ruthenus; Siberian sturgeon A. baerii, inhabiting the Lena River and migrating to the sea near the river mouth; and the following migratory acipenserids of the Volga-Caspian Basin (regular diadromous migrations): the Russian sturgeon A. gueldenstaedtii, the great sturgeon Huso huso, and the starred sturgeon A. stellatus. The study was carried out on immature specimens (of age 2+). The level of osmolarity and concentrations of cations (Na⁺, K⁺, Ca²⁺, and Mg²⁺) were determined in blood serum, urine, and liquid from the cavity of spiral valve in fish from the fresh water (control) and after their adaptation (period of seven to ten days) to sea water with salinity 12.5–12.7 and 18‰. The increase was found in the functional activity of the mechanism of osmotic and ion homeostasis in sturgeons according to the increase of the environmental salinity of a particular species. The freshwater sterlet adapted to the sea environment as osmoconformer. The other studied species were capable of maintaining a relative stability of osmolarity and ion concentration in blood serum at different levels while adapting to the sea environment; they changed from hyperosmotic (in fresh water) to hypoosmotic type of regulation. The kidney plays a more significant role in the removal of excessive Na⁺ in sturgeons than in bony fish. An increase in the sodium-reabsorption and magnesium-secretion functions of the kidney as well as the sodium-absorption function of the intestines was observed in sturgeons, relative to the increase of environmental salinity.     

The revision of the validity of genus <Emphasis Type="Italic">Huso</Emphasis> (Acipenseridae) based on recent morphological and genetic data with particular reference to the Kaluga <Emphasis Type="Italic">H. dauricus</Emphasis>

The comparative morphological study in different Acipenseriform species demonstrates that there are only two morphological features combining the kaluga and the great sturgeon and separating them from other sturgeons, namely the shape of a mouth and the manner attaching of gill membranes to isthmus in adult specimens; whereas many morphological characters are different in these species. The relations of morphological similarity/distinction among different sturgeon species and polyphyletic origin of genus Huso revealed by both molecular and cytogenetic studies presume the restoration of initial taxonomic states for the great sturgeon and kaluga as members of the same genus Acipenser, namely A. huso and A. dauricus.     

Periventricular and central nuclei of the pretectal area of diencephalon of the sturgeons

Cytoarchitectonics of periventricular and central nuclei of the pretectal area was studied in four species of the sturgeons: the great sturgeon Huso huso, L., the Russian sturgeon Acipenser gъldenst?dti persicus n. kurensis, Belyaeff, the starred sturgeon Ac. stellatus, Pall., and the barbel sturgeon Ac. nudiventris, Lov.; this pretectum part has a similar structure. Study of these parts of the pretectal area was carried out by methods of Nissl and Bielshowskii modified by Viktorov. In this part of the pretectal area, nine nuclear structures were described, eight of them—nuclear; these are ventral periventricular pretectal nucleus and its dorsal component, dorsal periventricular pretectal nucleus, nucleus of medial longitudinal bundle, subcomissural organ, medial and lateral intercalate nuclei, and central and posterior pretectal nuclei. The main attention has been paid to the issue of the evolutional progression of this part of the pretectal area in the sturgeons as compared with other Actinopterygii.     

Features of inheritance of several morphological characters in the hybrids between Siberian sturgeon <Emphasis Type="Italic">Acipenser baerii</Emphasis> and beluga <Emphasis Type="Italic">A. huso</Emphasis> (Acipenseridae) and in gynogenetic individuals of Siberian sturgeon

Comparative analysis of several morphological characters is conducted in experimentally obtained hybrids between Siberian sturgeon Acipenser baerii and beluga A. huso, in parental species, and in gynogenetic progeny of Siberian sturgeon. The gynogenetic individuals are similar to Siberian sturgeon by all characters used for differentiation between Siberian sturgeon and beluga that supports gynogenetic origin of these individuals. Based on the data obtained on the hybrid specimens, the features of inheritance of the studied characters in sturgeons and their variation in postlarval ontogeny are discussed.     

Organization of diencephalon of the sturgeons. External nuclei of the pretectal area

Cytoarchitectonics of the external nuclei of the pretectal area was studied in four species of the sturgeons: great sturgeon, Huso huso L., Kura sturgeon, Acipenser gueldenstaedtii persicus n. Kurensis Belyaeff, stellate sturgeon, Ac. stellatus Pall. and barbel sturgeon, Ac. nudiventris Lov. Study of morphological organization of the structures was carried out using routine Nissl staining and Bilschowski impregnation technique in Viktorov’s modification. Similar structure of this pretectal area was found in the species. Five nuclear formations were described in this pretectal area: parvocellular and magnocellular external pretectal nuclei, laminiform nucleus of pretectum, dorsal pretectal nucleus, and the accessory optic nucleus. Comparison of the obtained data with the literature revealed a high level of differentiation of the area of pretectum in the sturgeons. Also, a general conclusion is given on the organization of the whole pretectal area in the sturgeons.     

Organization of hypothalamic area of diencephalon in the sturgeons

Cytoarchitectonics of hypothalamic area of diencephalon of the sturgeons was studied in serial sections by techniques of Nissl staining and Bielschowski impregnation in Viktorov’s modification. The hypothalamus was shown to be the most expanded area of diencephalon and forms its the most ventral part. The hypothalamic area of four studied sturgeons, the hausen, Huso huso L., Kura sturgeon, Acipenser guldenstaedtii persicus n. Kurensis Belyaeff, Caspian sturgeon, Ac. stellatus Pall. and the barbel sturgeon Ac. nudioventris Lov. was found to have similar structure. Eleven nerve structures are identified and described in the hypothalamic area: dorsal, ventral, and caudal periventricular zones, rostral and dorsal hypothalamic nuclei, ventral and ventrolateral hypothalamic nuclei, diffuse and central nuclei of the inferior lobes, nucleus of the vascular sac, and mammillary nucleus. Peculiarities and common features of organization of four major parts of hypothalamus of the sturgeons are considered in comparison with those of other ray-finned fish. The performed analysis indicates a high level of development of hypothalamus of the sturgeons.     

The validation of specific status of the sakhalin sturgeon <Emphasis Type="Italic">Acipenser mikadoi</Emphasis> (Acipenseridae) in the light of recent genetic and morphological data

The comparative morphological study in different Acipenseriform species demonstrates that there are only two morphological features combining the kaluga and the great sturgeon and separating them from other sturgeons, namely the shape of a mouth and the manner attaching of gill membranes to isthmus in adult specimens; whereas many morphological characters are different in these species. The relations of morphological similarity/distinction among different sturgeon species and polyphyletic origin of genus Huso revealed by both molecular and cytogenetic studies presume the restoration of initial taxonomic states for the great sturgeon and kaluga as members of the same genus Acipenser, namely A. huso and A. dauricus.     

Organization of diencephalon of the sturgeons. Posterior tubercular area. Caudal region

Cytoarchitectonics of caudal region of the posterior tubercular area of diencephalon was studied in four species of the true sturgeons: the giant sturgeon, Huso huso L., Kura sturgeon, Acipenser güldenstädtii persicus n. Kurensis Belyaeff, stellate sturgeon, Ac. stellatus Pall. and the barbel sturgeon Ac. nudiventris Lov. Morphologic organization of the brain region was studied by using staining techniques of Nissl and Bielschowski (Viktorov’s modification). Five nuclei were identified in the caudal region of the posterior tubercular area in all studied species: caudomedial, caudal and lateral thalamic nuclei forming the medial group, as well as lateral torus and posterior thalamic nuclei forming the lateral group. The latter two nuclei have their subdivisions. Characteristic peculiarity of the caudal region is the presence of only migrated nuclei. It is concluded that the level of differentiation of the diencephalon posterior tubercular area of the sturgeons allows considering it as one of the most evolutionary advanced structures among those in the actinopterygian fish line.     

Morphology and ecology of Pacific sturgeons

The six North Pacific members of the genus Acipenser have generally similar environmental requirements and share several specific morphological features. This Pacific group consists of green sturgeon, Acipenser medirostris, Sakhalin sturgeon, A. mikadoi, white sturgeon, A. transmontanus, Chinese sturgeon, A. sinensis, Dabry’s sturgeon, A. dabryanus and Amur sturgeon, A. schrenkii. A qualitative morphological examination of these species revealed synapomorphic characters that suggest close phyolgenetic relationships resulting from common ancestry of eastern and western species within the Pacific Rim. An evolutionary taxonomic approach, considering a reduction of characters from east to west, would suggest an Asian ancestry for all Pacific sturgeons. In contrast however, a phylogenetic approach using derived character states suggests a North American ancestry. Besides a common ancestry for Chinese and American sturgeons, the taxonomic status of A. mikadoi is discussed.     

Distribution of the enzyme activity in the intestine of beluga <Emphasis Type="Italic">Huso huso</Emphasis> and Russian sturgeon <Emphasis Type="Italic">Acipenser gueldenstaedtii</Emphasis> (Acipenseridae)

Data on distribution of digestive enzymes along the intestinal tract of mature specimens of the beluga Huso huso and Russian sturgeon Acipenser gueldenstaedtii are presented. The absence of a distinct proximo-distal gradient of the enzyme activity can be explained by short length of the intestine of sturgeons. Considerable differences are found in the distribution pattern of enzymes along the intestinal tract of beluga and Russian sturgeon. The effect of the method of calculation of the enzyme activity on the data on the proximo- distal gradient is considered.     

Triple hybrids obtained by artificial hybridization of the Russian sturgeon Acipenser gueldenstaedtii with the hybrid of the starred sturgeon A. stellatus and the great sturgeon A. huso (Acipenseridae): The kind of inheritance of some morphological characters and fertility of the parental hybrid form

Results are described of experimental crossing for obtaining of triple hybrids of the Russian sturgeon Acipenser gueldenstaedtii, the great sturgeon A. huso, and the starred sturgeon A. stellatus and of comparative analysis of some quantitative morphological characters in these hybrids, in the progeny of parental species and of reciprocal hybrids of starred sturgeon and great sturgeon. By most investigated characters, in triple hybrids, the states of the paternal species (Russian sturgeon) are inherited, by some other characters-of great sturgeon-the state of starred sturgeon is not inherited. Therefore, on the basis of external appearance, they may be identified as the hybrid of Russian sturgeon with great sturgeon. The observed segregation by the form of gill rakers into paternal, maternal, or intermediate variants leads to a conclusion of nonmonogenous inheritance of a wide form and a conical form of gill rakers in sturgeons. On the whole, the obtained results clearly demonstrate how, due to effects of matrocliny and partocliny, and different combination of dominant and recessive alleles of the genes determining the diagnostic characters, the hybrid individuals may acquire a different extent of similarity and differences from the parental species. The investigated triple hybrids are an interesting example of mutual leveling of divergent traits in the course of combination of different genomes within limits of one closely related Atlantic group of sturgeons. As a result, a certain averaged habitus is formed which might take place also in case of formation of polyploidy species in the process of evolution.     

Polymorphism of the mitochondrial DNA control region in eight sturgeon species and development of a system for DNA-based species identification

Intraspecific and interspecific nucleotide sequence variations of the mtDNA control region (D-loop) were studied with mtDNAs isolated from tissue specimens of more than 1400 sturgeons of nine species: Russian sturgeon Acipenser gueldenstaedtii, Persian sturgeon A. persicus, Siberian sturgeon A. baerii, Amur sturgeon A. schrenkii, Fringebarbel sturgeon A. nudiventris, sterlet A. ruthenus, stellate sturgeon A. stellatus, beluga Huso huso, and kaluga H. dauricus. The results were used to analyze the interspecific variation of the mtDNA control region in the given set of species and to develop a test system of ten species-specific primers, which allowed species identification from noninvasive tissue samples, spawn, and food products of eight species. The system proved suitable for multiplex PCR. A method was developed for the first time to reliably differentiate the A. baerii mitotype and the baerii-like mitotype of A. gueldenstaedtii. It was found that, although genetically separate, A. gueldenstaedtii and A. persicus are relatively young species and have common mitochondrial haplotypes, precluding their identification via mtDNA analysis alone. To develop a system for species identification of A. gueldenstaedtii and A. persicus, it is necessary to study the polymorphism of nuclear markers.     

Organization of diencephalon of the sturgeons. Preoptic area

Cytoarchitectonics of preoptic area of diencephalon of chondroid ganoid fish (the sturgeons) was studied in serial sections using Nissl and Bilschowski techniques, the latter in Viktorov’s modification). The preoptic area of the hausen, Huso huso L., Kura sturgeon, Acipenser guldenstaedtii persicus n. kurensis Belyaeff, Caspian sturgeon, Acipenser stellatus Pall. and the sturgeon Acipenser nudioventris Lov. was shown to be one of the largest parts of diencephalon. It is located along the rostral excess of the third ventricle and the anterior third of the ventricle thalamic part. Eight nuclei are identified in the preoptic area: (1) anterior microcellular preoptic nucleus, (2) suprachiasmatic nucleus, (3) accessory preoptic nucleus, (4) intrachiasmatic nucleus, (5) magnocellular preoptic nucleus, (6) posterior microcellular preoptic nucleus, (7) caudal preoptic nucleus, (8) entopeduncular nucleus. Besides, microcellular, magnocellular, and gigantocellular parts are identified in the magnocellular preoptic nucleus. The obtained results indicate high differentiation of this area of the sturgeons among Actinopterygii.     

Organization of diencephalon of the sturgeons. Posterior tubercular area. Periventricular and rostral parts

Cytoarchitectonics of periventricular and rostral parts of the posterior tubercular area of diencephalon was studied in four species of the cartilaginous ganoids by using routine Nissl staining and Bielschowski impregnation technique in Viktorov’s modification. The posterior tubercular area in the giant sturgeon Huso huso L., the Kura sturgeon Acipenser güldenstädtii persicus n. Kurensis Belyaeff, the stellate sturgeon Ac. stellatus Pall., and the barbel sturgeon Ac. nudiventris Lov. was shown to have similar structure. Six structures were identified in these areas: the periventricular nucleus, paraventricular organ, nucleus of the paraventricular organ, and posterior tuberal nucleus in the periventricular region and preglomerular medial and lateral nuclei in the rostral region. Both nuclei of the rostral zone are migrated nuclei. Out of nuclei of the posterior tubercle regions, the posterior tuberal and medial preglomerular nuclei are characterized by polymorphism of cellular elements. A conclusion is made that these parts of the posterior tubercular area in the sturgeons considered to be the lower ray-finned fish are comparable with those of the higher teleosts, and even are more differentiated according to some parameters.     

Sturgeons in Greece: a review

In the past, sturgeons were practically unknown in Greece, both to the public and to scientists, the latter not having had the opportunity to study wild populations of the four native species. Populations of stellate sturgeon (Αcipenser stellatus Pallas, 1771), Adriatic sturgeon (Acipenser naccarii Bonaparte, 1836), and beluga sturgeon (Huso huso L., 1758) gradually collapsed by the end of the 1970s. Only the River Evros (Thrace, N.W. Greece) sustained a small fishery and caviar canning operation with European sturgeon (A. sturio L., 1758) until 1975. Collapse of stocks was mainly attributed to overfishing, pollution and damming. Sturgeons became widely known after initial farming efforts by the Municipal Hatchery at Lake Ioannina in 1992. Broodstock or fertilized eggs of species with high aquaculture potential, such as sterlet (Acipenser ruthenus L., 1758), Russian sturgeon (Acipenser gueldenstaedtii Brandt, 1833), bester hybrid (A. ruthenus ×H. huso), paddlefish (Polyodon spathula Walbaum, 1792), Siberian sturgeon (Acipenser baerii Brandt, 1869) and white sturgeon (Acipenser transmontanus Richardson, 1836) were imported into Greece between 1992 and 2004. Hatchery technology, larval rearing and production systems are reviewed in this paper and, despite problems, past and present efforts appear to meet a particular interest of the aquaculture sector as well as of those interested in the restoration of wild stocks.     

Comparative protein profiles: Potential molecular markers from spermatozoa of Acipenseriformes (Chondrostei,Pisces)

Sturgeon and paddlefish (Acipenseriformes), the source of roe consumed as caviar, are a unique and commercially valuable group of ancient fishes. In this study, comparative proteomics was used to analyze protein profiles of spermatozoa from five sturgeon species and one paddlefish: Siberian sturgeon (Acipenser baerii), sterlet (A. ruthenus), Russian sturgeon (A. gueldenstaedtii), starry sturgeon (A. stellatus), beluga (Huso huso), and Mississippi paddlefish (Polyodon spathula). Protein profiles of spermatozoa were determined by isoelectric focusing and two-dimensional electrophoresis (2-DE) high-resolution gels. The peptides, previously selected by 2-DE analysis as potentially species-specific, were obtained by “in-gel” tryptic digestion, followed by matrix-associated laser desorption/ionization time-of-flight/mass spectrometry (MALDI-TOF/MS). Among the 23 protein spots selected, 14 were identified as isoforms of enolase B present in all species, but with different isoelectric points or molecular mass. Exceptions were A. ruthenus and H. huso, species with a close phylogenetic relationship. Glycerol-3-phosphate dehydrogenase was detected exclusively in P. spathula. Phosphoglycerate kinase was detected only in A. ruthenus and H. huso, and 3 additional proteins (fructose bisphosphate aldolase A-2, glycogen phosphorylase type IV and glyceraldehyde-3-phosphate dehydrogenase) were found exclusively in A. gueldenstaedtii and H. huso. This study points to the application of proteomics for differential characterization and comparative studies of acipenseriform species at the molecular level.     

High‐throughput SNP‐genotyping analysis of the relationships among Ponto‐Caspian sturgeon species

Legally certified sturgeon fisheries require population protection and conservation methods, including DNA tests to identify the source of valuable sturgeon roe. However, the available genetic data are insufficient to distinguish between different sturgeon populations, and are even unable to distinguish between some species. We performed high‐throughput single‐nucleotide polymorphism (SNP)‐genotyping analysis on different populations of Russian (Acipenser gueldenstaedtii), Persian (A. persicus), and Siberian (A. baerii) sturgeon species from the Caspian Sea region (Volga and Ural Rivers), the Azov Sea, and two Siberian rivers. We found that Russian sturgeons from the Volga and Ural Rivers were essentially indistinguishable, but they differed from Russian sturgeons in the Azov Sea, and from Persian and Siberian sturgeons. We identified eight SNPs that were sufficient to distinguish these sturgeon populations with 80% confidence, and allowed the development of markers to distinguish sturgeon species. Finally, on the basis of our SNP data, we propose that the A. baerii‐like mitochondrial DNA found in some Russian sturgeons from the Caspian Sea arose via an introgression event during the Pleistocene glaciation.