Microbial community dynamics in a seasonally anoxic fjord: Saanich Inlet, British Columbia

Dissolved oxygen concentration plays a major role in shaping biotic interactions and nutrient flows within marine ecosystems. Throughout the global ocean, regions of low dissolved oxygen concentration (hypoxia) are a common and expanding feature of the water column, with major feedback on productivity and greenhouse gas cycling. To better understand microbial diversity underlying biogeochemical transformations within oxygen-deficient oceanic waters, we monitored and quantified bacterial and archaeal community dynamics in relation to dissolved gases and nutrients during a seasonal stratification and deep water renewal cycle in Saanich Inlet, British Columbia, a seasonally anoxic fjord. A number of microbial groups partitioned within oxygen-deficient waters including Nitrospina and SAR324 affiliated with the δ- proteobacteria , SAR406 and γ- proteobacteria related to thiotrophic gill symbionts of deep-sea clams and mussels. Microbial diversity was highest within the hypoxic transition zone decreasing dramatically within anoxic basin waters and temporal patterns of niche partitioning were observed along defined gradients of oxygen and phosphate. These results provide a robust comparative phylogenetic framework for inferring systems metabolism of nitrogen, carbon and sulfur cycling within oxygen-deficient oceanic waters and establish Saanich Inlet as a tractable model for studying the response of microbial communities to changing levels of water column hypoxia.     

Freshwater littoral copepods of British Columbia and Alberta (Canada)

This is part of an ongoing study on the freshwater littoral copepods of northwestern North America, comprising Alaska, Yukon, western Northwest Territories, British Columbia, Alberta, and Saskatchewan. In this paper we report 13 species of calanoids and 16 species of cyclopoids found in 142 samples collected from northern British Columbia and Alberta on either side of the Rocky mountains. We discuss morphology and distribution of some of these species.     

Ultraviolet irradiance and primary production in a Vancouver Island fjord, British Columbia, Canada

The photosynthetic uptake of CO² by phytoplankton enclosed insilica- and quartz-glass bottles suspended at seven depths fromthe sea surface to 7 m was measured in Saanich Inlet, from earlyApril to mid-September, 1976. Rates of uptake were slower inquartz- than in silica-glass bottles at 0 and 1–m depthsduring spring and late summer. Differences were attributed tothe presence of ultraviolet light (315 – 350 nm) in quartz-glassbottles. No differences between bottles were observed in earlysummer months when total irradiances at the sea surface weremaximal. This absence of depression could have been due to thepresence of species resistant to u.v. damage since the taxonomkcomposition of phytoplankton during summer was quite differentthan in spring.     

Feeding rates of planktonic copepods from a tropical sea

The feeding rates of the marine planktonic copepods, Eucalanus subcrassus Giesbrecht, Tortanus gracilis (Brady), Calanopia elliptica (Dana) (both male and female), Temora turbinata (Dana), and Paracalanus aculeatus Giesbrecht (only female) from tropical inshore waters have been studied. Newly hatched Artemia nauplii (for Eucalanus, Tortanus, and Calanopia), Dunaliella (for Temora), and Skeletonema (for Paracalanus) were used as food.Feeding rates were measured for a single individual through successive incubations once or twice a day until death to determine changes in feeding rate after collection. Copepods survived from a few days to three weeks. In general, feeding rates varied from day to day, but were less variable than the differences between day and night rates. In some cases, feeding rate consistently decreased up to the death of the copepod. Daily ration, estimated in terms of percentage body weight, was in the range of 28–329 ‰ Using the results together with the those of other workers, gives the relation between daily ration (Y, % body weight) and body weight of copepods (X; μg dry weight) at 20 °C as, logY = 2.531?0.377 logX.Copepods given Artemia nauplii as food killed more nauplii than were eaten. This phenomenon, tentatively called ‘over-hunting’, is possibly an important feeding behaviour for carnivorous copepods.     

Ciliates as a food source for marine planktonic copepods

Copepods of the genusEurytemora, isolated from the Patuxent River, a tributary of Chesapeake Bay, were fed suspensions of the ciliateUronema isolated from the Rhode River, a subestuary of Chesapeake Bay. Grazing by copepods was determined by the decrease in numbers of ciliates, which were monitored by both direct counting and particle size analysis. Results from both methods of analysis showed significant reduction in the numbers ofUronema in the suspension whenEurytemora was present. Survival of copepods with ciliates added as food source was significantly longer than without ciliates. Analysis of field samples collected in the fall showed that ciliates comprised approximately 20% of the total plankton biomass at selected sampling sites. The results of the laboratory and field studies indicate that copepods can feed on ciliates and suggest that, in nature, ciliates may comprise an important source of food for copepods.     

Evolution of bioluminescence in marine planktonic copepods

Copepods are the dominant taxa in zooplankton communities of the ocean worldwide. Although bioluminescence of certain copepods has been known for more than a 100 years, there is very limited information about the structure and evolutionary history of copepod luciferase genes. Here, we report the cDNA sequences of 11 copepod luciferases isolated from the superfamily Augaptiloidea in the order Calanoida. Highly conserved amino acid residues in two similar repeat sequences were confirmed by the multiple alignment of all known copepod luciferases. Copepod luciferases were classified into two groups of Metridinidae and Heterorhabdidae/Lucicutiidae families based on phylogenetic analyses, with confirmation of the interrelationships within the Calanoida using 18S ribosomal DNA sequences. The large diversity in the specific activity of planktonic homogenates and copepod luciferases that we were able to express in mammalian cultured cells illustrates the importance of bioluminescence as a protective function against predators. We also discuss the relationship between the evolution of copepod bioluminescence and the aspects of their ecological characteristics, such as swimming activity and vertical habitat.     

Response of Euphausia pacifica to small-scale shear in turbulent flow over a sill in a fjord

Zooplankton in the ocean respond to visual and hydro-mechanical cues such as small-scale shear in turbulent flow. In addition, they form strong aggregations where currents intersect sloping bottoms. Strong and predictable tidal currents over a sill in Knight Inlet, Canada, make it an ideal location to investigate biological behaviour in turbulent cross-isobath flow. We examine acoustic data (38, 120 and 200 kHz) collected there during the daylight hours, when the dominant zooplankters, Euphausia pacifica have descended into low light levels at ～90 m. As expected, these data reveal strong aggregations at the sill. However, they occur consistently 10-20 m below the preferred light depth of the animals. We have constructed a simple model of the flow to investigate this phenomenon. Tracks of individual animals are traced in the flow and a variety of zooplankton behaviours tested. Our results indicate that the euphausiids must actively swim downward when they encounter the bottom boundary layer (bbl) to reproduce the observed downward shift in aggregation patterns. We suggest that this behaviour is cued by the small-scale shear in the bbl. Furthermore, this behaviour is likely to enhance aggregations found in strong flows at sills and on continental shelves.     

Propagation of planktonic copepods: production and mortality of eggs

Data on fecundity and egg mortality of neritic copepods were collected in various seasons, areas and under various hydrographical conditions. On a seasonal basis variations in fecundity (F) were related to temperature rather than to the abundance of phytoplankton (P). However, a strong correlation between F and P was evident when water column stability varied horisontally or temporally (i.e. at a tidal front or subsequent to a storm). Estimated specific egg-mortalities were variable and occasionally very severe, up to 9.1 d^–1, implying that down to 10^–4% of the eggs survive to hatching. The implications for phenology and distribution of copepods are discussed.     

Population dynamics and parasitation of planktonic and epibenthic crustaceans in the Baltic Schlei fjord

The planktonic and epibenthic crustacean fauna from two sites of the brackish Schlei fjord, Northern Germany, was investigated over a six-month period. Calanoid and cyclopoid copepods were more abundant in lower salinities, whereas, benthic decapods, isopods and amphipods prevailed in the site of higher salinity. Cestodan larvae were found only in spring which may be due to the timing of the respective life-cycles. Parasites of benthic crustaceans, mostly digenean metacercariae but also cestodans, acanthocephalans and nematodes, appeared from spring to late summer. Decreasing salinities caused lower intensities of the most abundant parasite,Maritrema subdolum; only the true brackish-water species among the hosts were more heavily infested than those found in higher salinities. The correlation of parasite size and host size at infestation became apparent. Therefore,Crangon crangon is an optimal host for the largePodocotyle atomon metacercariae. Coevolutive trends between some hosts and parasites are made evident.     

Motion behavior of nauplii and early copepodid stages of marine planktonic copepods

The goal of this study was to quantify periods of activity andvelocities of late naupliar and early copepodid stages of planktoniccopepods occurring regularly on the southeastern continentalshelf of the USA. We obtained quantitative information on eightspecies, including adult females of Oithona plumifera. All studieswere conducted at food concentrations near or above satiationlevels. Activities ranged from 0.85% (adult females of O.plumifera)to 100% of time (nauplii and copepodids of various calanoidspecies). Motion velocities (excluding escape motion) coveredmore than one order of magnitude: from 0.39 mm s^–1 fornauplii of Temora stylifera to 5.24 mm s^–1 for naupliiof Oncaea mediterranea. Ranges of activities of species rangefrom occasional for early juveniles to adult females of O.plumiferato 100% for the same range of T.stylifera, the latter creatinga feeding current from N III onwards, the former not at all.Of notable interest is Centropages velificatus which moves intermittentlyas a late nauplius, continuously as an early copepodid and intermittentlyas an adult. All observed calanoid late nauplii and copepodidsmove in three dimensions, excluding copepodids of the shelfbreak/oceanicParacalanus aculeatus. The results indicate not only significantdifferences in motion behavior between cyclopoids and calanoids,but also between calanoid species. Yet, some calanoid speciesshow little ontogenetic changes at all.     

Diel distribution of copepods across a channel of an overwash mangrove island

The distribution of copepod species and their nauplii was studied in a narrow, blind channel on an overwash mangrove island offshore of Belize. Copepodids were sampled with a pump at five stations across the channel during a diel cycle. Diel changes of copepodid stages II – VI were marked by horizontal dispersal of Dioithona oculata, the dominant species, from swarms in the prop roots along the shore during the day to the edge of the prop root habitat at night. Migration of copepodids back to the prop roots appeared to be controlled endogenously because change from a night to a daytime age structure began before first light. Mean copepodid stage at subsurface depths in the channel and prop root edge decreased from 4.2 (with 6.0 = all adults) to 2.9 at predawn to 1.1 during day. The oceanic Oithona nana and O. simplex, and the coastal zone O. fonsecae were evenly distributed with depth and distance from shore during day and night, with avoidance of prop root shoreline during day. These species were much less abundant than Dioithona oculata in the prop roots, but of comparable or greater abundance in the channel. Coastal zone Acartia spinata exhibited evidence of swarming. Nauplii, sampled with a 25m plankton net, were dominated by harpacticoid (50%) and cyclopoid (34%) nauplii, which generally were more abundant at 1m than at the surface and more abundant at night than the day. Lagrangian current measurements indicated velocities at ebb tide twice those of flood tide (1.9 vs. 0.8 cm s^–1) and a minimal residence time of 5 days, which could result in advection of D. oculata nauplii out of the Lair Channel before their recruitment into swarms as copepodid stage II. Previously reported maximum swimming speeds of swarming D. oculata copepodid stages (2.0 cm s^–1) and greater densities in prop roots and near the benthos may help copepodids avoid advection. The swarming behavior and diel horizontal migration (or dispersal) reported for D. oculata appears analogous to that of limnetic zooplankton, which may swarm among macrophytes along shorelines during the day to avoid visual predators and disperse or migrate away from the shoreline at night.     

Life history, biomass and production of two planktonic cyclopoid copepods in a shallow subtropical reservoir

Two planktonic cyclopoid copepods (Tropocyclops prasinus andMesocyclops longisetus) were raised in the laboratory to obtainlife history information (duration of embryonic and post-embryonicdevelopment, reproductive performance, longevity, and stage-specificlength and weight values). Animals were maintained at 20 and25°C, and fed ad libitum. Development times were temperaturedependent when food was not limiting, with shorter periods ofembryonic and post-embryonic development and decreased longevityat 25°C. Laboratory data on the duration of developmentand biomass, together with population dynamics data obtainedin the field, were used to estimate summer and winter biomassand production of these species in a shallow reservoir, LagoaDourada, Brazil. The maximum production rate of T. prasinus,attained during summer, was 2.8 mg dry weight (DW) m^–3day^–1 and the highest daily production:biomass (P:B) ratiowas 0.29, whereas for M. longisetus the maximum production ratewas 1.4 mg DW m^–3 day^–1 and the highest daily P:Bratio was 0.39, in the winter. Over short time intervals (everyother day), there was great variability of the species productionrates. Species production rates were low compared to valuesreported in the literature for the same or other species ofequivalent sized copepods from both tropical and subtropicalregions.     

High Levels of Heterogeneity in the HIV Cascade of Care across Different Population Subgroups in British Columbia,Canada

Background

The HIV cascade of care (cascade) is a comprehensive tool which identifies attrition along the HIV care continuum. We executed analyses to explicate heterogeneity in the cascade across key strata, as well as identify predictors of attrition across stages of the cascade.

Methods

Using linked individual-level data for the population of HIV-positive individuals in BC, we considered the 2011 calendar year, including individuals diagnosed at least 6 months prior, and excluding individuals that died or were lost to follow-up before January 1^st, 2011. We defined five stages in the cascade framework: HIV ‘diagnosed’, ‘linked’ to care, ‘retained’ in care, ‘on HAART’ and virologically ‘suppressed’. We stratified the cascade by sex, age, risk category, and regional health authority. Finally, multiple logistic regression models were built to predict attrition across each stage of the cascade, adjusting for stratification variables.

Results

We identified 7621 HIV diagnosed individuals during the study period; 80% were male and 5% were <30, 17% 30–39, 37% 40–49 and 40% were ≥50 years. Of these, 32% were MSM, 28% IDU, 8% MSM/IDU, 12% heterosexual, and 20% other. Overall, 85% of individuals ‘on HAART’ were ‘suppressed’; however, this proportion ranged from 60%–93% in our various stratifications. Most individuals, in all subgroups, were lost between the stages: ‘linked’ to ‘retained’ and ‘on HAART’ to ‘suppressed’. Subgroups with the highest attrition between these stages included females and individuals <30 years (regardless of transmission risk group). IDUs experienced the greatest attrition of all subgroups. Logistic regression results found extensive statistically significant heterogeneity in attrition across the cascade between subgroups and regional health authorities.

Conclusions

We found that extensive heterogeneity in attrition existed across subgroups and regional health authorities along the HIV cascade of care in B.C., Canada. Our results provide critical information to optimize engagement in care and health service delivery.