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1.
The population structure of 147 marsh deer (Blastocerus dichotomus) from three areas in the Paraná River basin, Brazil, was
studied by observing protein polymorphism at 17 loci. Six loci were polymorphic and 11 monomorphic. The proportion of polymorphic
loci (P) was 35.29% and the average heterozygosity (H) was 6.31%. Wright's FST indicated that only 4.9% of the total variation in allelic frequencies was due to genetic differences between the three groups.
The high value of FIS (0.246) indicated inbreeding in the marsh deer. Genetic distance values (D = 0.014–0.051) showed little divergence between the three areas. We suggest that probable mechanisms accounting for the genetic
structure are female phylopatry and polygyny and also that inbreeding has resulted from decreasing areas of wetland leading
to isolation, overhunting, and diseases transmitted by cattle. 相似文献
2.
Journal of Ichthyology - The morphological and genetic heterogeneity of sockeye salmon Oncorhynchus nerka (from both the mixed samples and the samples collected in different periods of its mass... 相似文献
3.
Margarita Lampo Señaris J. Celsa Argelia Rodríguez‐Contreras Fernando Rojas‐Runjaic Carmen Z. García 《Biotropica》2012,44(3):420-426
Atelopus is among the most threatened of all amphibian genera. Most species of harlequin frogs disappeared more than two decades ago and only a few still exist. From ten critically endangered Atelopus species endemic to Venezuela, Atelopus cruciger is the only one that can be located at present. To assess the status of remnant populations of A. cruciger and to provide the demographic data for designing in situ management programs, we estimated: (1) the population size; (2) the apparent survival; and (3) the recruitment rates of one remnant population using mark‐recapture data. The adult population size varied (69–117), and this variation was not related to that of abundance indices based on visual counts at the river margins. Thus, caution is recommended when using visual counts as an index of abundance in Atelopus, because capture rates differ significantly among months and between seasons. Despite the observed variations, this population appears to be stable. Previous reports suggest that species of Atelopus are long‐lived. For populations of long‐lived species to remain approximately constant, recruitment must be low. Our mark‐recapture study, however, showed that adults tend to remain in the population for approximately 15 mo, but an average of 165 new frogs are recruited every year. Although immigration and emigration are possibilities, the site fidelity and the absence of nearby streams suggests that movement in and out of the study area is less important than births and deaths. Under the proposed hypothesis of a short life expectancy/high recruitment, the risk of extinction must be lower than previously thought. 相似文献
4.
Qualitative data are presented on the diet of juvenile chum salmon Oncorhynchus keta released from the Ryazanovka experimental fish hatchery farm situated in the south of Primor’e Territory. The stomach fullness,
frequency of occurrence of food items, their average weight value, and selectivity are estimated. Food spectra of chum salmon
juveniles during downstream migration comprised representatives of 51 taxa of bottom freshwater invertebrates and terrestrial
insects. The bulk of the diet consisted of larvae of aquatic insects—chironomids, other Diptera, and mayflies. Their diversity
increased with the growth of fry. Fry of chum salmon had a wide spectrum of feeding preference, favorite food items were larvae
and pupae of chironomids. 相似文献
5.
In this paper, we have analyzed the nuclear DNA of Alectoris magna samples, collected from the Longzhong Loess Plateau. We used allelic variation at eight microsatellite markers to describe the genetic structure of A. magna populations. The primary goal of this study was to examine the population genetic structure and determine the extent of population differentiation among populations of A. magna. The average value of H
E
(0.455) was smaller than H
O
(0.477), and there was a heterozygote deficit at the MCW135 locus in the Lanzhou population and the Beidao population. The AB063167 locus in each population (except that of Jingyuan) was not in equilibrium (P < 0.05). The Lixian edge population had a lower proportion of genetic diversity than the central geographic populations; the Haiyuan and Jingyuan populations had higher genetic diversity than the central geographic populations. Analysis of population structure revealed clear differentiation among the eight populations of A. magna, suggesting strong isolation of these populations and correspondingly low levels of migration or gene flow. The A. magna populations of Longzhong Loess Plateau are separated into eastern and western populations by a clustering chart. Genetic data indeed suggest that patterns of speciation and population diversification of A. magna in the Longzhong Plateau have been affected by the stability of the climate, natural selection, and human intervention. 相似文献
6.
The question whether environmental pollution affects genetic diversity in natural populations remains unanswered to date despite the fact that genetic variation is one of the three pillars of biodiversity recognized in the Rio convention of 1993. The loss of genetic diversity in populations subjected to anthropogenic stress can be designated as “genetic erosion” and may be considered as a factor of concern in risk assessment of toxic chemicals. Theoretically there are four different ways in which toxicants can affect genetic variation: (i) by increasing mutation rates, (ii) by directional selection on tolerant genotypes, (iii) by causing bottleneck events, and (iv) by altering migration. This paper reviews studies that have documented genetic change in animal populations exposed to environmental pollution. In these studies, genetic variation is measured in a variety of ways: heritability of quantitative characters, heterozygosity of allozyme loci, haplotype diversity in mitochondrial DNA, and variability in RAPD fingerprints. Studies on cadmium tolerance of Collembola living in metal-contaminated soil suggest that strong directional selection pressure may decrease genetic variability of traits immediately linked to tolerance. Allozyme studies in fish have documented a similar decrease of genetic variation in populations living in strongly acidified waters. A correlation between RAPD-PCR-based genetic similarity and site contamination has been documented in crayfish. Overall, there is significant support for the genetic erosion hypothesis, but the issue cannot be considered settled. In most studies insufficient attention is given to factors such as population size, bottlenecks and mutation, which may influence genetic variability in addition to the toxicant selection regime. At the moment, there does not seem to be a sound scientific basis for incorporating genetic diversity measurements into risk assessment, despite the variety of easily applicable molecular techniques available. It is often not known what kind of variation is measured by these techniques (neutral or selectable) and how the markers are inherited. Given the importance of the issue, as stressed by the Rio Convention, a concentrated research effort is necessary to better define the question and find a general approach to evaluate its importance in ecological risk assessment. 相似文献
7.
Mario J. Pastorino 《Restoration Ecology》2012,20(5):551-554
Two different studies based on isozymes that include genetic structure analysis have arrived at contrasting conclusions regarding the minimum number of seed transfer zones for Patagonian cypress (Austrocedrus chilensis) in Argentina that are required in order to avoid genetic contamination in restoration programs. Unfortunately, the more recent article lacks discussion on these controversial results, which is, therefore, the purpose of this article. The reliability of the markers used and the sampling performed in these studies are evaluated comparatively. The later study found higher levels of diversity and differentiation but paradoxically suggested that only two seed transfer zones would be enough to preserve the genetic identity of the natural populations of the species, whereas the earlier study concluded that at least five are necessary. Arguments are presented here for the case that definition of fewer than five genetically homogeneous groups is absolutely inappropriate and implies a probable risk of genetic contamination and maladaptation. 相似文献
8.
Sylvain Dolédec 《Hydrobiologia》1989,182(1):73-89
Seasonal sampling at six locations on the Lower Ardèche River was effected irregularly during 1982, 1983 and 1984. The seasonal structure of the taxa-sample matrix, much more important than sample location, is demonstrated using graphical interpretation.The Mediterranean aspect of the lower reaches of the Ardèche River is pointed out through its community structure which includes species often collected in other typical Mediterranean streams, e.g. Oligoneuriella rhenana, Ephoron virgo, Ecdyonurus dispar, E. insignis, Choroterpes picteti.Water temperature and day length were the determinant influences on seasonal variations in population structure of benthic macroinvertebrates. Three periods were distinguished: water (November to April), spring (May, June and beginning July) and summer (end of July to October). Spring and autumnal spates marked the limits of the summer and winter periods. Hence, annual fluctuations of this seasonal typology may occur in response to the hydrological regime. 相似文献
9.
During 2009–2011, mosquitoes were captured in CDC miniature light traps using CO2 (dry ice) at six sites in the Lower Dyje River Basin (Czech Republic). Other methods of capture — sweeping from vegetation
and collection of larvae and pupae from ponds — were also used for more precise diagnostics. Thirty mosquito species of six
genera were confirmed. A total of 415,218 females were captured. Most frequently found were the outbreak species Aedes vexans (56.52% of all mosquitoes collected) and Ae. sticticus (16.40%). Among other flood species, Ae. rossicus (5.17%), Ae. cantans and Ae. annulipes (2.44% of all females collected), and Ae. cinereus s. l. (1.11%) were especially abundant. Females of Ae. cataphylla were captured in spring (0.31%) and Ae. intrudens was numerous only at one site. Among the other species, Culex pipiens s. l. (6.61%) and Cx. modestus (8.87%) were abundant. Anopheles maculipennis s. l. (1.01%), An. claviger (0.43%), An. plumbeus (0.08%), An. hyrcanus (0.08%), Coquillettidia richiardii (0.52%) and Culiseta annulata (0.18%) were also detected. Sparsely occurring were Ae. excrucians, Ae. flavescens, Ae. caspius and Ae. geniculatus. Captured only very sporadically were Ae. communis, Ae. leucomelas, Ae. dorsalis, Ae. rusticus, Cx. martinii, Cx. territans, Cs. morsitans and Uranotaenia unguiculata. 相似文献
10.
The effective population size (Ne) is proportional to the loss of genetic diversity and the rate of inbreeding, and its accurate estimation is crucial for the monitoring of small populations. Here, we integrate temporal studies of the gecko Oedura reticulata, to compare genetic and demographic estimators of Ne. Because geckos have overlapping generations, our goal was to demographically estimate NbI, the inbreeding effective number of breeders and to calculate the NbI/Na ratio (Na = number of adults) for four populations. Demographically estimated NbI ranged from 1 to 65 individuals. The mean reduction in the effective number of breeders relative to census size (NbI/Na) was 0.1 to 1.1. We identified the variance in reproductive success as the most important variable contributing to reduction of this ratio. We used four methods to estimate the genetic based inbreeding effective number of breeders NbI(gen) and the variance effective populations size NeV(gen) estimates from the genotype data. Two of these methods - a temporal moment-based (MBT) and a likelihood-based approach (TM3) require at least two samples in time, while the other two were single-sample estimators - the linkage disequilibrium method with bias correction LDNe and the program ONeSAMP. The genetic based estimates were fairly similar across methods and also similar to the demographic estimates excluding those estimates, in which upper confidence interval boundaries were uninformative. For example, LDNe and ONeSAMP estimates ranged from 14–55 and 24–48 individuals, respectively. However, temporal methods suffered from a large variation in confidence intervals and concerns about the prior information. We conclude that the single-sample estimators are an acceptable short-cut to estimate NbI for species such as geckos and will be of great importance for the monitoring of species in fragmented landscapes. 相似文献
11.
The use of developmental instability (an individual's failure to produce a consistent phenotype in a given environment) was evaluated to detect the effects of outplanting hatchery fish on wild salmon. Juvenile chinook salmon were collected in 1989, 1990, and 1991 from five drainages in the Snake River Basin. In each drainage we attempted to collect fish from streams with no hatchery supplementation (wild), naturally spawning fish from streams with hatchery supplementation (natural), and fish collected at a hatchery. Forty fish were collected per site and the number of elements in bilateral characters were counted on each side of the fish. Indices of fluctuating asymmetry (FA), a measure of minor, random deviations in perfect symmetry of bilateral counts, were calculated as an estimator of developmental instability. Analysis of character counts from seven paired characters revealed normal distributions. Only one of the characters displayed counts that were statistically larger on one side than the other, indicating that directional asymmetry (DA) or antisymmetry was not a major bias of FA. However, the means of all individual characters revealed a non-statistically significant left side bias. We analyzed our data using two indices of FA (FA1 and FA5) with different levels of sensitivity to DA. Differences in both FA indices were found among years, with collection sites in 1989 having significantly larger FA values than in 1991 (FA p < 0.01). Levels of FA among wild, natural, and hatchery fish were comparatively small (FA1 p = 0.17). This suggests developmental conditions were different in the first year of the study than in the last. The cause of these differences may be linked to either genetic or environmental variation or to gene—environment interactions, but the general population declines of salmon that occurred during this time obscures more specific conclusions. 相似文献
12.
Eva Carolina Rueda Pedro Carriquiriborde Alexander Miguel Monzón Gustavo M. Somoza Guillermo Ortí 《Genetica》2013,141(7-9):401-407
Prochilodus lineatus is a highly migratory fish species that sustains the most important commercial fishery of Paraná-Paraguay basin. Migratory patterns are poorly known and only few population genetic studies are available for this species in the Upper Paraná. To assess genetic population structure, we genotyped a sample of 93 individuals from the Lower Uruguay River close to Gualeguaychú city (Entre Ríos, Argentina) at three different times, July 2008 (Winter), September 2008 (Spring) and May 2009 (Fall). All individuals were genotyped for 12 microsatellite loci previously found to be informative to assess populations of P. lineatus. Our results show seasonal variation of the genetic sub-structuring at this locality that may be related to the presence of different migratory stocks throughout the year. The Fall sample includes an additional genetic cluster of individuals not detected in Winter and Spring, suggesting that this species should be considered a mixed stock fishery. 相似文献
13.
Genetic Load in Natural Populations: Is It Compatible with the Hypothesis That Many Polymorphisms Are Maintained by Natural Selection? 总被引:5,自引:0,他引:5 下载免费PDF全文
Recent studies of genetically controlled enzyme variation lead to an estimation that at least 30 to 60% of the structural genes are polymorphic in natural populations of many vertebrate and invertebrate species. Some authors have argued that a substantial proportion of these polymorphisms cannot be maintained by natural selection because this would result in an unbearable genetic load. If many polymorphisms are maintained by heterotic natural selection, individuals with much greater than average proportion of homozygous loci should have very low fitness. We have measured in Drosophila melanogaster the fitness of flies homozygous for a complete chromosome relative to normal wild flies. A total of 37 chromosomes from a natural population have been tested using 92 experimental populations. The mean fitness of homozygous flies is 0.12 for second chromosomes, and 0.13 for third chromosomes. These estimates are compatible with the hypothesis that many (more than one thousand) loci are maintained by heterotic selection in natural populations of D. melanogaster. 相似文献
14.
We produced gynogenetic progeny families to estimate gene-centromere (G-C) distances of allozyme loci in even-year and odd-year pink salmon (Oncorhynchus gorbuscha). G-C distances of 37 loci distributed on a chromosome ranged from 1 cM at LDH-A1* to 49 cM at ADA-2*, DIA-2*, and sMDH-B1,2*. The distribution of the G-C distances along the chromosome arm was not even and appears telomeric. Eight loci in even-year and seven in odd-year showed high G-C distances (>45 cM), indicating that one crossover per chromosome arm is usual in pink salmon. Variation was observed in the results from different families; 14 loci out of 21 tested, showed heterogeneity. At mAH-3*, G-C distances from five odd-year families ranged from 6 to 37 cM; the widest range observed in this study. At isoloci such as sMDH-A 1,2* and sMDH-B1,2* the distances from different families were grouped into statistically discrete distributions, suggesting that it may be a reflection polymorphism at both isoloci. It appears G-C distances in salmonid species are well conserved with some minor differences. 相似文献
15.
M.D.B. Eldridge J.E. Kinnear K.R. Zenger L.M. McKenzie P.B.S. Spencer 《Conservation Genetics》2004,5(3):325-338
Since European settlement, mainland Australia has experienced a wave of mammal extinctions and population declines. However, some species have persisted on off-shore islands, which are now viewed as important wildlife refuges. In this study, we assessed the level of genetic diversity, at 7–11 microsatellite loci, in island and remnant mainland populations of three endemic species of macropodid marsupial; the tammar wallaby Macropus eugenii(n = 92); rufous hare-wallaby Lagorchestes hirsutus(n = 40) and black-footed rock-wallaby Petrogale lateralis(n = 164). There was a consistent pattern of significantly higher levels of microsatellite diversity in the remnant mainland population (A= 4.9–13.9; He= 0.61–0.86) of each species compared to conspecific pristine island populations (A= 1.2–3.7; He= 0.05–0.44). These marked differences are even apparent where island populations currently have a substantially larger census size. In addition, island populations were substantially inbred (Fe= 0.49–0.91). Although island populations have been insulated from the relatively recent threatening processes operating on the mainland, they have nevertheless been significantly impacted by increased inbreeding and the substantial erosion of genetic diversity. Despite the difficulties of ensuring the survival of remnant mainland populations, they appear to retain substantially more genetic diversity than their island counterparts and therefore are more likely to contribute to the long-term persistence of their species. These data also demonstrate that small remnant mainland populations (n < 10–20) are often capable of rapid recovery and are not necessarily genetically depauperate. 相似文献
16.
For over a century, Washington State Department of Fish and Wildlife has implemented hatchery programs as a means to boost salmon abundance. Concerns have developed that native populations may be replaced by hatchery strains, decreasing the genetic diversity required to respond to environmental changes. We report a comparison of microsatellite DNA variation in wild-spawning and hatchery-strain coho salmon from the Nooksack and Samish rivers in northern Puget Sound. Significant heterogeneity in genotype frequencies was detected between wild-spawning coho salmon from the upper North Fork (NF) Nooksack River and hatchery-strain coho salmon from the Nooksack River (descendants of primarily Nooksack River broodstock). Little difference in genotype frequencies was detected between wild-spawning coho salmon from the Samish River and hatchery-strain coho salmon from the Nooksack River. The 13-locus suite provided high resolution: in assignment tests over 85% of wild-spawning coho salmon from the upper NF Nooksack River were assigned to source. Wild-spawning coho salmon collected below hatcheries in the Nooksack River and 50% of wild-spawning Samish River coho salmon were assigned to hatchery collections. The genetic divergence of wild-spawning coho salmon in the upper NF Nooksack River is remarkable given the extensive stocking history and proximity of a hatchery. We suggest that these upper river fish are native coho salmon and that wild spawners in the lower Nooksack and Samish River are descendants of hatchery productions. We attribute divergence to earlier run timing in upper NF Nooksack River wild spawners, availability of extensive spawning and rearing habitat upstream of a hatchery in the upper NF Nooksack River, and a longer stocking history in the Samish River. 相似文献
17.
Robert Rutkowski Miha Krofel Giorgos Giannatos Du?ko ?irovi? Peep M?nnil Anatoliy M. Volokh József Lanszki Miklós Heltai László Szabó Ovidiu C. Banea Eduard Yavruyan Vahram Hayrapetyan Natia Kopaliani Anastasia Miliou George A. Tryfonopoulos Petros Lymberakis Aleksandra Penezi? Giedr? Pakeltyt? Ewa Suchecka Wies?aw Bogdanowicz 《PloS one》2015,10(11)
In the first continent-wide study of the golden jackal (Canis aureus), we characterised its population genetic structure and attempted to identify the origin of European populations. This provided a unique insight into genetic characteristics of a native carnivore population with rapid large-scale expansion. We analysed 15 microsatellite markers and a 406 base-pair fragment of the mitochondrial control region. Bayesian-based and principal components methods were applied to evaluate whether the geographical grouping of samples corresponded with genetic groups. Our analysis revealed low levels of genetic diversity, reflecting the unique history of the golden jackal among Europe’s native carnivores. The results suggest ongoing gene flow between south-eastern Europe and the Caucasus, with both contributing to the Baltic population, which appeared only recently. The population from the Peloponnese Peninsula in southern Greece forms a common genetic cluster with samples from south-eastern Europe (ΔK approach in STRUCTURE, Principal Components Analysis [PCA]), although the results based on BAPS and the estimated likelihood in STRUCTURE indicate that Peloponnesian jackals may represent a distinct population. Moreover, analyses of population structure also suggest either genetic distinctiveness of the island population from Samos near the coast of Asia Minor (BAPS, most STRUCTURE, PCA), or possibly its connection with the Caucasus population (one analysis in STRUCTURE). We speculate from our results that ancient Mediterranean jackal populations have persisted to the present day, and have merged with jackals colonising from Asia. These data also suggest that new populations of the golden jackal may be founded by long-distance dispersal, and thus should not be treated as an invasive alien species, i.e. an organism that is “non-native to an ecosystem, and which may cause economic or environmental harm or adversely affect human health”. These insights into the genetic structure and ancestry of Baltic jackals have important implications for management and conservation of jackals in Europe. The golden jackal is listed as an Annex V species in the EU Habitats Directive and as such, considering also the results presented here, should be legally protected in all EU member states. 相似文献
18.
Moise Saa Kagbadouno Mamadou Camara Jeremi Rouamba Jean-Baptiste Rayaisse Ibrahima Sory Traoré Oumou Camara Mory Fassou Onikoyamou Fabrice Courtin Sophie Ravel Thierry de Mee?s Bruno Bucheton Vincent Jamonneau Philippe Solano 《PLoS neglected tropical diseases》2012,6(12)
Human African Trypanosomiasis (HAT) in West Africa is a lethal, neglected disease caused by Trypanosoma brucei gambiense transmitted by the tsetse Glossina palpalis gambiensis. Although the littoral part of Guinea with its typical mangrove habitat is the most prevalent area in West Africa, very few data are available on the epidemiology of the disease in such biotopes. As part of a HAT elimination project in Guinea, we carried a cross-sectional study of the distribution and abundance of people, livestock, tsetse and trypanosomes in the focus of Boffa. An exhaustive census of the human population was done, together with spatial mapping of the area. Entomological data were collected, a human medical survey was organized together with a survey in domestic animals. In total, 45 HAT cases were detected out of 14445 people who attended the survey, these latter representing 50.9% of the total population. Potential additional carriers of T. b. gambiense were also identified by the trypanolysis test (14 human subjects and two domestic animals). No trypanosome pathogenic to animals were found, neither in the 874 tsetse dissected nor in the 300 domestic animals sampled. High densities of tsetse were found in places frequented by humans, such as pirogue jetties, narrow mangrove channels and watering points. The prevalence of T. b. gambiense in humans, combined to low attendance of the population at risk to medical surveys, and to an additional proportion of human and animal carriers of T. b. gambiense who are not treated, highlights the limits of strategies targeting HAT patients only. In order to stop T. b. gambiense transmission, vector control should be added to the current strategy of case detection and treatment. Such an integrated strategy will combine medical surveillance to find and treat cases, and vector control activities to protect people from the infective bites of tsetse. 相似文献
19.
Day — and night-forms of phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEP-C) were extracted from leaves of the CAM plant Kalanchoë daigremontiana. During storage after extraction, the day-form spontaneously lost its sensitivity towards the allosteric inhibitor l -malate. This effect was accelerated by inorganic phosphate, PEP, 3-PGA and G-6-P. l -Malate however stabilized the malate sensitivity of the day-form of PEP-C. Crude desalted extracts of the day-form and of the night-form of PEP-C were subjected to ultracentrifugation on a continuous sucrose gradient in the presence of malate and of marker enzymes. Both forms of PEP-C were found to have relative molecular masses of about 200,000. This suggests that both forms represent the dimers of the enzyme protein. The result also suggests that reversible dissociation and association of enzyme subunits is not the mechanism which brings about the interconversion of the two PEP-C forms during the diurnal CAM cycle in vivo. 相似文献
20.
Jean-Yves Zimmer Fran?ois Smeets Grégory Simonon Jean Fagot Eric Haubruge Frédéric Francis Bertrand Losson 《PloS one》2013,8(6)
Several species of Culicoides (Diptera: Ceratopogonidae) biting midges serve as biological vectors for the bluetongue virus (BTV) and the recently described Schmallenberg virus (SBV) in northern Europe. Since their recent emergence in this part of the continent, these diseases have caused considerable economic losses to the sheep and cattle industries. Much data is now available that describe the distribution, population dynamics, and feeding habits of these insects. However, little is known regarding the presence of Culicoides in unusual habitats such as peaty marshes, nor their potential vector capacity. This study evaluated Culicoides biting midges present in the bogs of a Belgian nature reserve compared to those residing at a nearby cattle farm. Culicoides were trapped in 2011 at four different sites (broadleaved and coniferous forested areas, open environments, and at a scientific station) located in the Hautes Fagnes Nature Reserve (Belgium). An additional light trap was operated on a nearby cattle farm. Very high numbers of biting midges were captured in the marshy area and most of them (70 to 95%) were Culicoides impunctatus, a potential vector of BTV and other pathogens. In addition, fewer numbers of C. obsoletus/C. scoticus species, C. chiopterus, and C. dewulfi were observed in the bogs compared to the farm. The wet environment and oligotrophic nature of the soil were probably responsible for these changes in the respective populations. A total of 297,808 Culicoides midges belonging to 27 species were identified during this study and 3 of these species (C. sphagnumensis, C. clintoni and C. comosioculatus) were described in Belgium for the first time. 相似文献