Coastal plant and soil relationships along the southwestern coast of South Korea

We studied how plant species distribution was regulated by the relationships between vegetation and soil factors on the southwestern coast of South Korea. Vegetation was classified using two-way indicator species analysis (TWINSPAN), thereby producing four vegetation groups that were linked to three habitat types. Two ordination techniques —; detrended correspondence analysis (DCA) and canonical correspondence analysis (CCA) —; were applied to examine the relationships between vegetation and 12 edaphic factors, including soil pH, water and osmotic potentials, moisture content, electrical conductivity, Cl and Na⁺ contents, total Kjeldahl nitrogen, and contents of organic matter, sand, silt, and clay. Results were similar for both types of evaluations. According to DCA and CCA, the 23 communities tended to cluster into three types: salt swamp, salt marsh, and sand dune. The first two canonical axes accounted for 14.9% of the community-soil factor relationship among communities. As identified via CCA, the main gradients were soil-water relations and soil texture.     

Cyanobacterial blooms and water quality in Greek waterbodies

The cyanobacterial species composition of nine Greek waterbodies of different type and trophic status was examined during the warm period of the year (May–October). Cyanobacterial water blooms were observed in all waterbodies. Forty-six cyanobacterial taxa were identified, 11 of which are known to be toxic. Eighteen species are reported for the first time in these waterbodies, 8 of which are known to produce toxins. Toxin producing species were found in all of the waterbodies and were primarily dominant in bloom formations (e.g., Microcystis aeruginosa, Anabaena flos-aquae, Aphanizomenon flos-aquae and Cylindrospermopsis raciborskii). Cosmopolitan species (e.g., M. aeruginosa), pantropic (e.g., Anabaenopsis tanganyikae) and holarctic species (e.g., Anabaena flos-aquae) were encountered. Shallow, eutrophic waterbodies had blooms dominated by Microcystis species and were characterized by phytoplankton association M. Anabaena and Aphanizomenon species of association H were dominant in waterbodies with low dissolved inorganic nitrogen and thermal stratification in the summer. Total cyanobacterial biovolumes (CBV) ranged from 7 to 9,507 cm³ m⁻³ and were higher than Alert Level 2 and Guidance Level 2 (10 cm³ m⁻³; World Health Organization; WHO) in seven of the waterbodies. Chlorophyll a concentrations ranged from 6 to 90,000 mg m⁻³ and were higher than Alert Level 2 and Guidance Level 2 (50 mg m⁻³; WHO) in eight of the waterbodies. There is also an elevated risk of acute toxicosis (Guidance Level 3; WHO) in five waterbodies. Water of an undesirable quality, hazardous to humans and animals occurs in several Greek waterbodies.     

Novel Chlamydiales strains isolated from a water treatment plant

Chlamydiae are obligate intracellular bacteria infecting free-living amoebae, vertebrates and some invertebrates. Novel members are regularly discovered, and there is accumulating evidence supporting a very important diversity of chlamydiae in the environment. In this study, we investigated the presence of chlamydiae in a drinking water treatment plant. Samples were used to inoculate Acanthamoeba monolayers ( Acanthamoeba co-culture), and to recover autochthonous amoebae onto non-nutritive agar. Chlamydiae were searched for by a pan-chlamydia 16S rRNA gene PCR from both Acanthamoeba co-cultures and autochthonous amoebae, and phylotypes determined by 16S rRNA gene sequencing. Autochthonous amoebae also were identified by 18S rRNA gene amplification and sequencing. From a total of 79 samples, we recovered eight chlamydial strains by Acanthamoeba co-culture, but only one of 28 amoebae harboured a chlamydia. Sequencing results and phylogenetic analysis showed our strains belonging to four distinct chlamydial lineages. Four strains, including the strain recovered within its natural host, belonged to the Parachlamydiaceae ; two closely related strains belonged to the Criblamydiaceae ; two distinct strains clustered with Rhabdochlamydia spp.; one strain clustered only with uncultured environmental clones. Our results confirmed the usefulness of amoeba co-culture to recover novel chlamydial strains from complex samples and demonstrated the huge diversity of chlamydiae in the environment, by identifying several new species including one representing the first strain of a new family.     

Bacterial diversity in biofilms formed on condenser tube surfaces in a nuclear power plant

To elucidate the bacterial diversity in biofilms formed on a condenser tube from a nuclear power plant, 16S rRNA gene sequences were examined using a PCR-cloning-sequencing approach. Twelve operational taxonomic units were retrieved in the clone library, and the estimated species richness was low (13.2). Most of the clones (94.7%) were affiliated with α-Proteobacteria; Planctomycetes and γ-Proteobacteria were much rarer. Interestingly, except for one clone belonging to Pseudoalteromonas, most of the sequences displayed sequence similarities <97% of those of the closest type strains. Based on 16S rRNA phylogenetic analysis, most bacteria were assigned to novel taxa above the species level. The low species richness and unusual bacterial composition may be attributable to selective pressure from chlorine in the cooling water. To prevent or control bacterial biofilms in cooling circuits, additional studies of the physiology and ecology of these species will be essential.     

Bacterial diversity in biofilms formed on condenser tube surfaces in a nuclear power plant

To elucidate the bacterial diversity in biofilms formed on a condenser tube from a nuclear power plant, 16S rRNA gene sequences were examined using a PCR-cloning-sequencing approach. Twelve operational taxonomic units were retrieved in the clone library, and the estimated species richness was low (13.2). Most of the clones (94.7%) were affiliated with α-Proteobacteria; Planctomycetes and γ-Proteobacteria were much rarer. Interestingly, except for one clone belonging to Pseudoalteromonas, most of the sequences displayed sequence similarities <97% of those of the closest type strains. Based on 16S rRNA phylogenetic analysis, most bacteria were assigned to novel taxa above the species level. The low species richness and unusual bacterial composition may be attributable to selective pressure from chlorine in the cooling water. To prevent or control bacterial biofilms in cooling circuits, additional studies of the physiology and ecology of these species will be essential.     

Ozone treatment of process water from a dry-mill ethanol plant

Fuel ethanol production in corn dry milling plants is a rapidly expanding industrial sector. Whole stillage, the residue from the distillation of the fermented corn, is centrifuged and the concentrate, thin stillage, is found to have a chemical oxygen demand (COD) of approximately 75,000 mg/L. This thin stillage is partly recycled, but much of it needs to be evaporated to concentrate the solubles for addition to the animal feed coproduct from corn dry milling. This research is an exploration into lowering COD from thin stillage using ozonation as a simple single-step unit process to facilitate a larger reusable fraction. The ozonation would usually be a pretreatment before additional flocculation or biological treatment. Also, COD removal by ozonation with and without a catalyst has been studied. Three different application rates of ozone O(3,1)=7 mg/min, O(3,2)=21 mg/min, and O(3,3)=33 mg/min were used for 8h into samples of 2L each of three dilutions 20x, 30x and 40x. COD removal of 85% was observed with an ozone dosage of 4000 mg/L into a 40x-diluted sample. This would correspond to about 0.5 mg COD removed per mg ozone dosed. However, at lower dosages and smaller dilutions, more than 1mg COD removal was achieved per mg ozone dosed. Two different catalysts, Fe(II) and Fe(III), were used and the samples were ozonated for 4 h. Five different dosages of each of the two catalysts were used and better COD removal was observed compared to ozonation alone with all 5 dosages. COD removal rate was increased from 45% to 74% with Fe(III) and was increased to 77% with Fe(II). Up to 10mg/L COD was removed per mg O(3) dosed well below the maximum dosage. Both the catalysts resulted in almost the same improved COD removal rates when compared to ozonation alone.     

Effects of management and structural connectivity on the plant communities of organic vegetable field margins in South Korea

Field margins are an important component of the agri-environment as they contribute to maintaining ecosystem functions and protecting biodiversity. Field margin structure, landscape attributes, and management practices have been examined as determinants of plant species diversity and composition for mainly cereal field margins; however, relatively little is known about their influence on vegetable field margins. We selected three types of field margins (each n = 4; non-managed connected to forests, non-managed isolated, and isolated and managed margins with mowing and organic herbicide) adjacent to organic vegetable crop fields and recorded the species richness and abundance of all vascular plants. The effects of structural connectivity, weed control management, and margin width on the community composition, species richness, and diversity were examined using multivariate statistical techniques. Plant community composition was clearly explained by structural connectivity between field margin and forest, as well as by weed control management. In contrast, species richness of functional guilds was influenced by connectivity and margin width, but not by weed control management. All communities had similar numbers of summer and fall blooming nectar- and pollen-producing plants, an important source of pollination services. In addition, each community of field margin types, despite different species composition, had similar levels of Shannon diversity and evenness. Our results suggest that habitat arrangement is important for determining community composition in field margins. Management practices may be important in determining dominance patterns of individual species. A combination of various margin types and widths may be beneficial for biodiversity conservation and ecosystem services.     

Biodiversity of amoebae and amoebae-resisting bacteria in a drinking water treatment plant

The complex ecology of free-living amoebae (FLA) and their role in spreading pathogenic microorganisms through water systems have recently raised considerable interest. In this study, we investigated the presence of FLA and amoebae-resisting bacteria (ARB) at various stages of a drinking water plant fed with river water. We isolated various amoebal species from the river and from several points within the plant, mostly at early steps of water treatment. Echinamoeba- and Hartmannella-related amoebae were mainly recovered in the drinking water plant whereas Acanthamoeba- and Naegleria-related amoebae were recovered from the river water and the sand filtration units. Some FLA isolates were recovered immediately after the ozonation step, thus suggesting resistance of these microorganisms to this disinfection procedure. A bacterial isolate related to Mycobacterium mucogenicum was recovered from an Echinamoeba-related amoeba isolated from ozone-treated water. Various other ARB were recovered using co-culture with axenic Acanthamoeba castellanii, including mycobacteria, legionella, Chlamydia-like organisms and various proteobacteria. Noteworthy, a new Parachlamydia acanthamoebae strain was recovered from river water and from granular activated carbon (GAC) biofilm. As amoebae mainly multiply in sand and GAC filters, optimization of filter backwash procedures probably offers a possibility to better control these protists and the risk associated with their intracellular hosts.     

Bacterial-fungal biofilms in flowing water photo-processing tanks

A complex seven species model community, including bacteria and fungi, was selected from organisms isolated from the walls of an industrial flowing water system. Growth rates of the species were determined in single and mixed batch culture growth. The rates were found to be significantly higher in mixed culture for Pseudomonas alcaligenes and Flavobacterium indologenes and higher in single culture for Xanthomonas maltophilia , Rhodotorula glutinis and Fusarium solani , whereas no significant difference was recorded for Alcaligenes denitrificans and Fusarium oxysporum . All species attached to PVC in single and mixed culture to form biofilms. Xanthomonas maltophilia , Alc. denitrificans , Ps. alcaligenes and F. solani biofilm cell densities cm^-2 were significantly higher than attachment of the component species in mixed culture. Statistical analyses showed a significant difference in rate of colonization between single and mixed cultures for some species. No significant difference was noted between mixed culture cell densities cm^-2 at laminar flows of Reynolds number 2·7 and 5·4.     

Eutrophication of reservoirs in South Korea

Natural lakes in South Korea are limited in number and generally quite small. As a result, reservoirs and regulated rivers are the major sources of freshwater for society. About 18 000 reservoirs have been constructed in South Korea, and they are particularly important for domestic water supply. Thirteen of the major reservoirs were surveyed in this general assessment of the trophic state of South Korean reservoirs. Ten reservoirs were from the upper or middle reaches of rivers (including eight of the ten largest reservoirs in Korea), and three were estuarine reservoirs. Reservoirs in the mountainous district of South Korea were usually mesotrophic, whereas the estuarine reservoirs were highly eutrophic. Because total nitrogen to total phosphorus ratios were always between 18 and 163, phosphorus was probably more limiting than nitrogen for algal growth. However, hydraulic residence time and light penetration may be limiting in the nutrient-enriched downstream reservoirs. In winter, algal density was lowest in deep reservoirs, perhaps due to deep mixing. During the same season, algal density was high in shallow reservoirs, perhaps due to a favorable hydraulic residence time. Factors contributing to the observed eutrophication patterns, including nutrient runoff from agriculture, animal farms, fish aquaculture, and urban areas, are discussed. According to the national budget of phosphorus, fertilizer and livestock manure are major source of phosphorus, contributing 133 400 and 73 700 tons of phosphorus per year, respectively, while human excretion discharges 30 000 tons P year⁻¹. Reduction of the application of fertilizer, proper treatment of manure, and conservation of topsoil may be the most practical and effective measures to prevent further lake eutrophication. Received: February 15, 2001 / Accepted: July 2, 2001     

Polymorphism of 6-PGD in South Korea: a new genetic variant 6-PGD Korea

Summary During population genetic studies in Korea a new variant in the 6-phosphogluconate (6-PGD) system preliminary called 6-PGD^Korea was observed.     

Distribution of lichen flora on South Korea

After an overview on the temporary situation of the lichenology in South Korea, localities of 95 macrolichen taxa are reported for South Korea. In this revised lichen flora of South Korea, 16 species are apparently new to the territory. Voucher specimens have been deposited in the Korean Lichen Research Institute (KoLRI) at Sunchon National University in Korea, and duplicates have also been donated to the National History Museum and Institute, in Chiba, (CBM) Japan.     

Conservation of plant diversity in Korea

Korea is a land of contrasts. The mountainous Korean peninsula arches north and northwest towards the Russian and Chinese borders, where the last areas of old growth coniferous forest and the land formed five forest types. Plant and habitat diversity in Korea has been largely damaged by various kinds of human activities. The plant diversity of Korea is severely threatened due to the high population density and rapid industrialization since the 1960s, as well as the illegal collection of wild plants for ornamental, medicinal, and food purposes. Natural areas have been greatly fragmented and survive only as ecological islands surrounded by modified cultivated and industrial lands. For instance, more than 60 industrial parks are located along the coast, and these have contributed to the rapid destruction of plant diversity in the coastal areas of the peninsula. The modern concept of plant conservation in Korea is still in an infant stage. The cooperation of plant conservation bodies with disciplinary approaches based on conservation biology are essential strategies to pursue plant conservation. The capacity building for plant conservation in Korea has different management regimes by the relevant ministries. Since the late 1990s, the plant conservation body Korean Plant Specialist Group of the International Union for the Conservation of Nature and Natural Resources Species Survival Commission (IUCN SSC) has been closely linked with international conservation bodies for in situ and ex situ conservation management. Under the umbrella of the national plant conservation strategies, the different strategies and working agencies can be fully integrated. Furthermore, the systematic approaches for the recovery of threatened species, as well as habitat monitoring over the long-term basis, will need to be supported by a stable budget policy. Also, protocol for the conservation of rare and endangered plant species, including recovery works in Korea, is strongly needed.     

A dynamic model for tuberculosis transmission and optimal treatment strategies in South Korea

We have developed a dynamic model for tuberculosis (TB) transmission in South Korea using a SEIR model with the time-dependent parameters. South Korea ranked the highest TB incidence among members of the Organization for Economic Cooperation and Development (OECD) in 2005 yr. The observed data from the Korea Center for Disease Control and Prevention (KCDC) shows a certain rise of active-TB incidence individuals after 2001 yr. Because of this sudden jump, we have considered two different periods for best fitting the model: prior to 2001 yr and posterior to 2001 yr. The least-squares fitting has been used for estimating model parameters to the observed data of active-TB incidence. Our model agrees well with the observed data. In this work, we also propose optimal treatment strategies of TB model in South Korea for the future. We have considered three control mechanisms representing distancing, case finding and case holding efforts. Optimal control programs have been proposed in various scenarios, in order to minimize the number of exposed and infectious individuals and the cost of implementing the control treatment.     

Cyclic sedimentation across a Middle Ordovician carbonate ramp (Duwibong Formation), Korea

Summary The Middle Ordovician Duwibong Formation (about 100 m thick), Korea, comprises various lithotypes deposited across a carbonate ramp. Their stacking patterns constitute several kinds of meter-scale, shallowing-upward carbonate cycles. Lithofacies associations are grouped into four depositional facies: deep- to mid-ramp, shoal-complex, lagoonal, and tidal-flat facies. These facies are composed of distinctive depositional cycles: deep subtidal, shallow subtidal, restricted marine, and peritidal cycles, respectively. The subtidal cycles are capped by subtidal lithofacies and indicate incomplete shallowing to the peritidal zone. The restricted marine and peritidal cycles are capped by tidal flat lithofacies and show evidence of subaerial exposure. These cycles were formed by higher frequency sea-level fluctuations with durations of 120 ky (fifth order), which were superimposed on the longer term sea-level events, and by sediment redistribution by storm-induced currents and waves. The stratigraphic succession of the Duwibong Formation represents a general regressive trend. The vertical facies change records the transition from a deep- to mid-ramp to shoal, to lagoon, into a peritidal zone. The depositional system of the Duwibong Formation was influenced by frequent storms, especially on the deep ramp to mid-ramp seaward of ooid shoals. The storm deposits comprise about 20% of the Duwibong sequence.     

Core-satellite populations and seasonality of water meter biofilms in a metropolitan drinking water distribution system

Drinking water distribution systems (DWDSs) harbor the microorganisms in biofilms and suspended communities, yet the diversity and spatiotemporal distribution have been studied mainly in the suspended communities. This study examined the diversity of biofilms in an urban DWDS, its relationship with suspended communities and its dynamics. The studied DWDS in Urbana, Illinois received conventionally treated and disinfected water sourced from the groundwater. Over a 2-year span, biomass were sampled from household water meters (n=213) and tap water (n=20) to represent biofilm and suspended communities, respectively. A positive correlation between operational taxonomic unit (OTU) abundance and occupancy was observed. Examined under a ‘core-satellite'' model, the biofilm community comprised 31 core populations that encompassed 76.7% of total 16 S rRNA gene pyrosequences. The biofilm communities shared with the suspended community highly abundant and prevalent OTUs, which related to methano-/methylotrophs (i.e., Methylophilaceae and Methylococcaceae) and aerobic heterotrophs (Sphingomonadaceae and Comamonadaceae), yet differed by specific core populations and lower diversity and evenness. Multivariate tests indicated seasonality as the main contributor to community structure variation. This pattern was resilient to annual change and correlated to the cyclic fluctuations of core populations. The findings of a distinctive biofilm community assemblage and methano-/methyltrophic primary production provide critical insights for developing more targeted water quality monitoring programs and treatment strategies for groundwater-sourced drinking water systems.