Four new species of <Emphasis Type="Italic">Aloe</Emphasis> (Aloaceae) from Ethiopia,with notes on the ethics of describing new taxa from foreign countries

Subsequent to the treatment of the Aloaceae, with 38 species of Aloe, in the Flora of Ethiopia (Sebsebe Demissew & Gilbert 1997), four more species, Aloe bertemariae Sebsebe & Dioli (2000), A. friisii Sebsebe & M. G. Gilbert (2000), A. clarkei L. E. Newton (2002) and A. elkerriana Dioli & T. A. McCoy (2007) have been described from that country. Here four additional new species are described: Aloe benishangulana Sebsebe & Tesfaye from near Assosa, Benishangul-Gumuz in Welega floristic region; A. ghibensis Sebsebe & Friis from the Ghibe Gorge, Kefa floristic region; A. weloensis Sebsebe from near Dessie in Welo floristic region and A. welmelensis Sebsebe & Nordal along the Welmel River in Bale floristic region. The phytogeographical positions of the new species are assessed by comparison with the previously known species. Complications with the deposition of type material of A. clarkei and A. elkerriana is used to raise various issues regarding the ethics of describing new taxa from foreign countries.     

Cationic hydrous thorium dioxide colloids - a useful tool for staining negatively charged surface matrices of bacteria for use in energy-filtered transmission electron microscopy

Background  

Synthesis of cationic hydrous thorium dioxide colloids (ca. 1.0 to 1.7 nm) has been originally described by Müller [22] and Groot [11] and these have been used by Groot to stain acidic glucosaminoglycans for ultrastructure research of different tissues by conventional transmission electron microscopy.     

Dynamic formation of oriented patches in chondrocyte cell cultures

Growth factors have a significant impact not only on the growth dynamics but also on the phenotype of chondrocytes (Barbero et al. in J. Cell. Phys. 204:830–838, 2005). In particular, as chondrocytes approach confluence, the cells tend to align and form coherent patches. Starting from a mathematical model for fibroblast populations at equilibrium (Mogilner et al. in Physica D 89:346–367, 1996), a dynamic continuum model with logistic growth is developed. Both linear stability analysis and numerical solutions of the time-dependent nonlinear integro-partial differential equation are used to identify the key parameters that lead to pattern formation in the model. The numerical results are compared quantitatively to experimental data by extracting statistical information on orientation, density and patch size through Gabor filters.     

TROSY-selected ZZ-exchange experiment for characterizing slow chemical exchange in large proteins

A TROSY-selected ZZ-exchange experiment is described for measuring slow chemical exchange rates by monitoring the TROSY component of ¹⁵N longitudinal magnetization. Application of the proposed pulse sequence to the cadherin 8 N-terminal extracelluar domain demonstrates that enhanced sensitivity is obtained, compared to a previously described TROSY-detected ZZ-exchange sequence (Sahu et al. J Am Chem Soc 129: 13232–13237, 2007), by preserving the TROSY effect during the mixing period as well as the frequency encoding periods.     

A general linear framework for the comparison and evaluation of models of sensorimotor synchronization

Sensorimotor synchronization (SMS), the temporal coordination of a rhythmic movement with an external rhythm, has been studied most often in tasks that require tapping along with a metronome. Models of SMS use information about the timing of preceding stimuli and responses to predict when the next response will be made. This article compares the theoretical structure and empirical predictions of four two-parameter models proposed in the literature: Michon (Timing in temporal tracking, Van Gorcum, Assen, 1967), Hary and Moore (Br J Math Stat Psychol 40:109–124, 1987b), Mates (Biol Cybern 70:463–473, 1994a; Biol Cybern 70:475–484, 1994b), and Schulze et al. (Mus Percept 22:461–467, 2005). By embedding these models within a general linear framework, the mathematical equivalence of the Michon, Hary and Moore, and Schulze et al. models is demonstrated. The Mates model, which differs from the other three, is then tested empirically with new data from a tapping experiment in which the metronome alternated between two tempi. The Mates model predictions are found to be invalid for about one-third of the trials, suggesting that at least one of the model’s underlying assumptions is incorrect. The other models cannot be refuted as easily, but they do not predict some features of the data very accurately. Comparison of the models’ predictions in a training/test procedure did not yield any significant differences. The general linear framework introduced here may help in the formulation of new models that make better predictions.     

Using fuzzy numbers to propagate uncertainty in matrix-based LCI

Background, aim, and scope  Analysis of uncertainties plays a vital role in the interpretation of life cycle assessment findings. Some of these uncertainties arise from parametric data variability in life cycle inventory analysis. For instance, the efficiencies of manufacturing processes may vary among different industrial sites or geographic regions; or, in the case of new and unproven technologies, it is possible that prospective performance levels can only be estimated. Although such data variability is usually treated using a probabilistic framework, some recent work on the use of fuzzy sets or possibility theory has appeared in the literature. The latter school of thought is based on the notion that not all data variability can be properly described in terms of frequency of occurrence. In many cases, it is necessary to model the uncertainty associated with the subjective degree of plausibility of parameter values. Fuzzy set theory is appropriate for such uncertainties. However, the computations required for handling fuzzy quantities has not been fully integrated with the formal matrix-based life cycle inventory analysis (LCI) described by Heijungs and Suh (2002). Materials and methods  This paper integrates computations with fuzzy numbers into the matrix-based LCI computational model described in the literature. The approach uses fuzzy numbers to propagate the data variability in LCI calculations, and results in fuzzy distributions of the inventory results. The approach is developed based on similarities with the fuzzy economic input–output (EIO) model proposed by Buckley (Eur J Oper Res 39:54–60, 1989). Results  The matrix-based fuzzy LCI model is illustrated using three simple case studies. The first case shows how fuzzy inventory results arise in simple systems with variability in industrial efficiency and emissions data. The second case study illustrates how the model applies for life cycle systems with co-products, and thus requires the inclusion of displaced processes. The third case study demonstrates the use of the method in the context of comparing different carbon sequestration technologies. Discussion  These simple case studies illustrate the important features of the model, including possible computational issues that can arise with larger and more complex life cycle systems. Conclusions  A fuzzy matrix-based LCI model has been proposed. The model extends the conventional matrix-based LCI model to allow for computations with parametric data variability represented as fuzzy numbers. This approach is an alternative or complementary approach to interval analysis, probabilistic or Monte Carlo techniques. Recommendations and perspectives  Potential further work in this area includes extension of the fuzzy model to EIO-LCA models and to life cycle impact assessment (LCIA); development of hybrid fuzzy-probabilistic approaches; and integration with life cycle-based optimization or decision analysis. Additional theoretical work is needed for modeling correlations of the variability of parameters using interacting or correlated fuzzy numbers, which remains an unresolved computational issue. Furthermore, integration of the fuzzy model into LCA software can also be investigated.     

Life cycle assessment of magnetic and electronic ballast for 36-W fluorescent lamp

Background, aim, and scope   

Ballast is a device in a fluorescent lamp that supports the production of light. In this study, the environmental impacts of two types of Malaysian ballast, magnetic ballast and electronic ballast, were identified and compared using the life cycle assessment approach through the ISO 14040 (2005) series.     

Response probability and response time: a straight line, the Tagging/Retagging interpretation of short term memory, an operational definition of meaningfulness and short term memory time decay and search time

The functional relationship between correct response probability and response time is investigated in data sets from Rubin, Hinton and Wenzel, J Exp Psychol Learn Mem Cogn 25:1161–1176, 1999 and Anderson, J Exp Psychol [Hum Learn] 7:326–343, 1981. The two measures are linearly related through stimulus presentation lags from 0 to 594 s in the former experiment and for repeated learning of words in the latter. The Tagging/Retagging interpretation of short term memory is introduced to explain this linear relationship. At stimulus presentation the words are tagged. This tagging level drops slowly with time. When a probe word is reintroduced the tagging level has to increase for the word to be properly identified leading to a delay in response time. The tagging time is related to the meaningfulness of the words used—the more meaningful the word the longer the tagging time. After stimulus presentation the tagging level drops in a logarithmic fashion to 50% after 10 s and to 20% after 240 s. The incorrect recall and recognition times saturate in the Rubin et al. data set (they are not linear for large time lags), suggesting a limited time to search the short term memory structure: the search time for recall of unusual words is 1.7 s. For recognition of nonsense words the corresponding time is about 0.4 s, similar to the 0.243 s found in Cavanagh (1972).     

Nomenclature of tribes within the Urticaceae

Summary  As part of systematic studies of the genus Elatostema (Urticaceae) and its sister genera, it was apparent that different names had been applied at the tribal level for these genera. This paper proposes that the tribal name Elatostemeae be used for the genera currently delineated as belonging to tribe Lecantheae (Friis 1993). It is also proposed that the authorship of the currently recognised tribes in the Urticaceae should be attributed to Charles Gaudichaud-Beaupres as described in H. L. C. de Freycinet’s Voyage autour du monde…executé sur les corvettes de S. M. l’Uranie et la Physiciene, published in 1830.     

S100β Protein Expression: Gender- and Age-Related Daily Changes

S100β is a soluble protein released by glial cells mainly under the activation of the 5-HT1A receptor. It has been reported as a neuro-trophic and -tropic factor that promotes neurite maturation and outgrowth during development. This protein also plays a role in axonal stability and the plasticity underlying long-term potentiation in adult brains. The ability of S100β to rapidly regulate neuronal morphology raises the interesting point of whether there are daily rhythm or gender differences in S100β level in the brain. To answer this question, the S100β expression in adult female and male rats, as well as in adult female CD-21 and S100β −/− female mice, were investigated. Scintillation counting and morphometric analysis of the immunoreactivity of S100β, showed rhythmic daily expression. The female and male rats showed opposite cycles. Females presented the highest value at the beginning of the rest phase (5:00 h), while in males the maximum value appeared in the beginning of the motor activity period (21:00 h). These results confirm previous S100β evaluations in human serum and cerebrospinal fluid reporting the protein’s function as a biomarker for brain damage (Gazzolo et al. in Clin Chem 49:967–970, 2003; Clin Chim Acta 330:131–133, 2003; Pediatr Res 58:1170–1174, 2005), similar behavior was also observed for GFAP in relation to Alzheimer Disease (Fukuyama et al. in Eur Neurol 46:35–38, 2001). The data should be taken into account when considering S100β as a biomarker of health condition. In addition, the results raise questions on which structure or condition imposes these rhythms as well as on the physiological meaning of the observed gender differences.     

Interaction between descending input and thoracic reflexes for joint coordination in cockroach. II Comparative studies on tethered turning and searching

Tethered cockroaches turn from unilateral antennal contact using asymmetrical movements of mesothoracic (T2) legs (Mu and Ritzmannin J Comp Physiol A 191:1037–1054, 2005). During the turn, the leg on the inside of the turn (the inside T2 leg) has distinctly different motor patterns from those in straight walking. The transformation from walking to inside leg turning could be triggered by descending commands that alter a few critical reflexes that start a cascade of physical changes in leg movement or posture, leading to further alterations. This hypothesis has two implications: First, the descending activities must be able to influence thoracic reflexes. Second, one should be able to initiate the turning motor pattern in the absence of descending signals by mimicking a point farther down in the reflex cascade. We addressed the first implication in the companion paper. To examine the second implication, we compared kinematics and motor activities of the T2 leg during searching with that of inside leg turning. The reaching movements made during searching were found to be similar to the movements made by the inside leg during turning. Moreover, even after disconnecting the brain from the thoracic ganglia the reaching movements were similar. This observation is consistent with the second implication from the hypothesis.     

CRK9 contributes to regulation of mitosis and cytokinesis in the procyclic form of Trypanosoma brucei

Background  

The Trypanosoma brucei cell cycle is regulated by combinations of cyclin/CRKs (cdc2 related kinases). Recently, two additional cyclins (CYC10, CYC11) and six new CRK (CRK7-12) homologues were identified in the T. brucei genome database [1,2].     

<Emphasis Type="Italic">Anisakis nascettii</Emphasis> n. sp. (Nematoda: Anisakidae) from beaked whales of the southern hemisphere: morphological description,genetic relationships between congeners and ecological data

A new anisakid nematode, Anisakis nascettii n. sp., is described from beaked whales Mesoplodon spp. off the coast of New Zealand and South Africa. Morphological and molecular (allozymes and mtDNA cox2 sequence) data were used for diagnostic and identification purposes. Among the 19 allozymes studied, 10 were found to be unique and characteristic for A. nascettii n. sp. Analysis of allozymes demonstrated reproductive isolation from A. ziphidarum Paggi, Nascetti, Webb, Mattiucci, Cianchi & Bullini, 1998 and mtDNA cox2 sequences depict this Anisakis species as a distinct and unique entity. Key morphological diagnostic traits for A. nascettii with respect to the genetically closely related species A. ziphidarum include: spicule length, the spicule/body length ratio, the arrangement of the caudal papillae and the shape of the plectanes of the adult males. Genetic data confirmed that Anisakis sp. A of Pontes et al. (2005), which was partly described by Iglesias et al. (2008), and Anisakis sp. of Valentini et al. (2006) are conspecific with A. nascettii. Both molecular and morphological data indicate that the new species belongs to the ‘ziphidarum-group’; however, it is genetically very distinct from A. ziphidarum (D _Nei  = 0.69, K2P = 0.09), as well as from all of the previously genetically characterised Anisakis spp. All tree topologies inferred by different methods (MP, NJ and Bayesian) support the finding that A. nascettii n. sp. and A. ziphidarum are sister-species. It is also confirmed that A. nascettii n. sp. is, at the adult stage, a parasite of beaked whales of the genus Mesoplodon, whereas, as a larva, it has been identified from the squid Moroteuthis ingens Smith. Furthermore, Mesoplodon bowdoini Andrews represents a new host record for A. ziphidarum. The parallelism between the clade formed by these two anisakine taxa, i.e. A. ziphidarum and A. nascettii, and that formed by their definitive hosts further supports the hypothesis of host–parasite co-evolutionary relationships, as previously suggested for Anisakis spp. and their cetacean hosts.     

A new species of the interstitial genus <Emphasis Type="Italic">Neopetitia</Emphasis> (Polychaeta,Syllidae, Eusyllinae) from Tenerife,with modified acicular chaetae in males

A new species of Neopetitia San Martín, 2003 is described from intertidal and shallow subtidal soft-bottom stations on the eastern and western coast of Tenerife, Canary Islands. The new species is characterized by the presence in males of a modified acicular chaeta in chaetiger 11. A discussion of known species of the genus is presented.     

TGF-Mediated Dynamics in a System of Many Coupled Nephrons

This paper presents a mathematical model of a system of many coupled nephrons branching from a common cortical radial artery, and accompanying analysis of that system. This modeling effort is a first step in understanding how coupling magnifies the tendency of nephrons to oscillate owing to tubuloglomerular feedback. Central to the present work is the single nephron integral model (as in Pitman et al., The IMA Volumes in Mathematics and Its Applications, vol. 129, pp. 345–364, 2002 and in Zaritski, Ph.D. Dissertation, 1999) which is a simplification of the single nephron PDE model of Layton et al. (Am. J. Physiol. 261, F904–F919, 1991). A second principal idea used in the present model is a coupling of model nephrons, generalizing the work of Pitman et al. (Bull. Math. Biol. 66, 1463–1492, 2004) who proposed a model of two coupled nephrons. In this study, we couple nephrons through a nearest neighbor interaction. Speaking generally, our results suggest that a series of similar nephrons coupled to their nearest neighbors are more prone to be found in an oscillatory mode, relative to a single nephron with the same properties. More specifically, we show analytically that, for N coupled identical nephrons, the region supporting oscillatory solutions in the time delay–gain parameter plane increases with N. Numerical simulations suggest that, if N nephrons have gains and time delays that do not differ by much, the system is, again, more prone to oscillate, relative to a single nephron, and the oscillations tend to be approximately synchronous and in-phase. We examine the effect of parameters on bifurcation. We also examine alternative models of coupling; this analysis allows us to conclude that the increased propensity of coupled nephrons to oscillate is a robust finding, true for several models of nephron interaction.     

A synoptic revision of Dacryodes (Burseraceae) in Africa, with a new species from Central Africa

Summary  A synoptic revision is presented for the genus Dacryodes Vahl in Africa. The studies are based on examination of herbarium material. Eighteen species are recognised, including two not well known due to poor material. The new species Dacryodes villiersiana Onana is described and illustrated. The conservation status of the species is discussed following the categories and criteria of IUCN (2001).     

Effect of of ATP on Neurons of the Rat Intact Nodose Ganglion

Under intracellular recording, we studied the effect of ATP on nerve cells of the rat intact nodose ganglion. The resting membrane potential of the examined neurons was, on average, –60.3 ± 1.4 mV (n = 84); among such units, 88% were classified as C cells. Local application of 2 mM ATP to the surface of the ganglion using a modified laminar flow system led to depolarization of neurons by 7.1 ± 0.9 mV, on average (n = 19). A blocker of P2X receptors, PPADS (100 μM), suppressed these depolarization responses, decreasing their amplitude, on average, to 16 ± 3% (n = 3) of the initial value. The obtained data indicate that an overwhelming majority of neurons of the intact nodose ganglion possess functional P2X receptors on their membranes. The absence of the corresponding responses in a considerable part of neurons of intact spinal ganglia [13-15] was, apparently, determined by the fact that P2X receptors in the course of the described experiments had enough time to desensitize before ATP reached the effective concentration.     

Cortical beta EEG oscillations related to changes in muscle tone activity during sleep in spider monkey (Ateles geoffroyi)

Background

The physiological mechanisms that allow for sleeping in a vertical position, which is primordial for arboreal primates, have not been studied yet.

Methods

A non‐invasive polysomnographic study of 6 spider monkeys (Ateles geoffroyi) was conducted. The relative beta power of the motor cortex and its linear relation with muscle tone in the facial mentalis muscle and the abductor caudae medialis muscle of the tail during wakefulness and sleep stages were calculated.

Results

A strong negative linear relationship (r = ?.8, P = .03) was found between the relative power of the beta2 band in the left motor cortex and abductor caudae medialis muscle tone during delta sleep.

Conclusions

The left motor cortex, through beta2 band activity, interacts with abductor caudae medialis muscle tonicity during delta sleep. This interaction takes part in the mechanisms that regulate the sleep postures.