Ecological diversity of the Eastern Mediterranean region of Turkey and its conservation

The Taurus Mountain range separates the central Anatolian steppe and the Eastern Mediterranean Region. The Amanos Mountains lie to the east, playing a significant role in forming this region which is strongly influenced by the Mediterranean Sea. Between the Taurus Mountains and the sea, there is a diversity of terrestrial, limnic and marine ecosystems. These contain a number of differing biotopes such as grassland above the timberline, evergreen and deciduous forests, scrubland, river beds, lagoons, coastal saltmarshes, coastal woodlands and sand dunes. Due to intensive land use, the ecological diversity is threatened, and so governmental and scientific bodies have combined resources to implement conservation measures. This paper emphasizes the importance of these conservation activities and discusses realistic proposals for conservation in the region.     

Environmental science and management of coastal lagoons in the Southern Mediterranean Region: key issues revealed by the MELMARINA Project

Lagoons in the heavily populated, semi-arid coastal zone of the Southern Mediterranean Region exemplify the conflict between human utilisation of water and related resources and aquatic ecosystems. Having recognised the requirement to improve understanding of the functioning of the region’s coastal wetlands, the MELMARINA Project undertook integrated hydro-ecological monitoring and modelling within lagoons in Morocco, Tunisia and Egypt. This article highlights some key issues regarding environmental science and management of the region’s coastal lagoons revealed during the course of the project. It stresses the importance of hydrology as a key control upon lagoon functioning and ecosystem dynamics. Hydrological modifications due to water resource management schemes are the cause of many recent changes experienced within lagoons. Linkages between water quality, water availability, human activities and biological characteristics of coastal lagoons are discussed with particular reference to the controls upon vegetation within the MELMARINA lagoons. A series of methodological advances are reviewed which have potential for wider application within coastal lagoons. It is suggested that the use of lagoon sediment for environmental reconstruction can be invaluable, especially when monitoring data are lacking. Recent advances in instrumentation technologies make long-term continuous monitoring more feasible although these approaches can be combined with more traditional site surveys to provide wider spatial coverage at the expense of temporal resolution. Wider spatial coverage can also be achieved through the use of space-borne or aerial remote sensing imagery whilst longer-term trends in site characteristics can be assessed through historical map analyses. Geographical Information Systems, which facilitate the storage and interrogation of large and varied datasets, have enormous potential. Similarly, coupled hydro-ecological models can inform understanding of lagoon functioning and can assess scenarios associated with environmental change or alternative management approaches. The application of integrated, basin-wide approaches to the management of water resources and aquatic ecosystems in the Southern Mediterranean Region is advocated. This includes the application of principles from the EU’s Water Framework Directive. Finally, the need to place management in the context of climate change and associated sea level rise is stressed. Emphasis should be placed on the development of adaptation strategies designed to minimise the effects of these changes. Guest editors: J. R. Thompson & R. J. Flower Hydro-ecological Monitoring and Modelling of North African Coastal Lagoons     

Comparative composition and dynamics of harmful dinoflagellates in Mediterranean salt marshes and nearby external marine waters

The taxonomic structure of phytoplankton populations in two Mediterranean coastal lagoons were compared with those of nearby marine waters (external waters). Mediterranean confined lagoons remain isolated for most the year and concentrate phytoplankton to a very high biomass. Coastal lagoons on the Mediterranean may, therefore, act as accumulators of neritic phytoplankton (including species related to harmful algal blooms). We examined whether coastal lagoons act as concentrators of marine toxic dinoflagellates during confinement periods, and the common environmental factors that favour growth of specific harmful species in the two ecosystems considered: coastal lagoons and external waters. An alternation between the dominance of diatoms and dinoflagellates was observed, coinciding with that described in Margalef's mandala, occurring in external waters as well as in coastal lagoons. Moreover, the temporal patter was different in the two ecosystems. Dinoflagellate species composition and their bloom period were highly variable in time and space, thus, species had to be analysed individually. Most of the dinoflagellate species found in this study were potentially harmful and high biomass producers. Harmful dinoflagellate species performed well in both, external waters and lagoons, but the specific species-dependent affinity to each of these environments determined which organisms bloom there. Thus, expansion of harmful algal blooms (HAB) to inland waters is not likely and some environmental factors such as the oxidised state of available nitrogen, became determinant to the success and bloom of a species in the coastal lagoon ecosystem.     

Environmental variables,habitat discontinuity and life history shaping the genetic structure of Pomatoschistus marmoratus

Coastal lagoons are semi-isolated ecosystems exposed to wide fluctuations of environmental conditions and showing habitat fragmentation. These features may play an important role in separating species into different populations, even at small spatial scales. In this study, we evaluate the concordance between mitochondrial (previous published data) and nuclear data analyzing the genetic variability of Pomatoschistus marmoratus in five localities, inside and outside the Mar Menor coastal lagoon (SE Spain) using eight microsatellites. High genetic diversity and similar levels of allele richness were observed across all loci and localities, although significant genic and genotypic differentiation was found between populations inside and outside the lagoon. In contrast to the F _ST values obtained from previous mitochondrial DNA analyses (control region), the microsatellite data exhibited significant differentiation among samples inside the Mar Menor and between lagoonal and marine samples. This pattern was corroborated using Cavalli-Sforza genetic distances. The habitat fragmentation inside the coastal lagoon and among lagoon and marine localities could be acting as a barrier to gene flow and contributing to the observed genetic structure. Our results from generalized additive models point a significant link between extreme lagoonal environmental conditions (mainly maximum salinity) and P. marmoratus genetic composition. Thereby, these environmental features could be also acting on genetic structure of coastal lagoon populations of P. marmoratus favoring their genetic divergence. The mating strategy of P. marmoratus could be also influencing our results obtained from mitochondrial and nuclear DNA. Therefore, a special consideration must be done in the selection of the DNA markers depending on the reproductive strategy of the species.     

Glass eel recruitment, Anguilla anguilla (L.), in a Mediterranean lagoon assessed by a glass eel trap: factors explaining the catches

Although the colonisation of coastal rivers on the Atlantic and Mediterranean coast by glass eels, Anguilla anguilla, has been well studied and understood, the colonisation of lagoons by glass eels is much less known. For the first time in the Mediterranean region, the installation of a glass eel fish-pass in Grau de la Fourcade channels in the Rhône delta enabled us to determine which factors could explain the variations in the catches of glass eel entering the Vaccarès coastal lagoon system. Whatever be the procedure chosen, the results of the model were the same: the temperature, the cumulative water discharge from the channel in the 5 nights before the catch (freshwater lure) and time that the drainage pumps were working explained the glass eel catches in the fish-pass in the Grau de la Fourcade. The tide and the cumulative discharge from the channel for only 3 nights before the catch did not seem to have a significant role in explaining catches. These results show that it is important that the lagoons should continue to receive rainfall runoff from their watersheds so that their water levels are high in winter, and that there is a good colonisation by glass eels as a result of a freshwater lure effect, when strong north winds expel low salinity water to the sea.     

Genetic architecture of the marbled goby Pomatoschistus marmoratus (Perciformes, Gobiidae) in the Mediterranean Sea

The marbled goby Pomatoschistus marmoratus, a species inhabiting coastal Mediterranean lagoons, has been studied by measuring its mitochondrial DNA variation. This analysis revealed a Mediterranean west vs east split and, subsequently, an eastern differentiation among the Libyan-Tunisian Gulf, the Adriatic Sea and the Aegean Sea. The high cohesion between the samples collected in the vast area of western Mediterranean contrasts with the genetic mosaic of the more sub-structured eastern Mediterranean. This western homogeneity can not yet be fully explained even if a human-mediated migratory flow, due to a maritime traffic, has been posited. The pattern in the eastern basin revealed a genetic architecture possibly due to the non-migratory habit of the gobid. Within this perspective, the role of the Mediterranean lagoon habitat should be related to how much it amplifies the effects of historical (e.g. past sea-level changes) and environmental (e.g. present-day hydrographic regime) processes as regards the genetic structure of the inhabiting species.     

Sediment-benthos relationships as a tool to assist in conservation practices in a coastal lagoon subjected to sediment change

This study explores the relation between sediment composition and intertidal macrobenthos populations in the Zwin nature reserve (Belgium and The Netherlands), a tidal lagoon that is included in the Ramsar list of wetlands of international importance and has been designated as Natura 2000 area, among others due to its function as wintering habitat for shorebirds that feed upon macrobenthic invertebrates. Species response models show highest biomass of these prey species in organically enriched cohesive sediments and a distinct decline in probability of occurrence for most species in coarse sediments. Further, the biomass of macrobenthos declined between 2003 and 2010 in the extensive low intertidal inlet channel concurrent with the coarsening of the sediment over time in this hydrodynamically stressed habitat. In contrast, macrobenthos biomass increased in a sheltered shallow intertidal habitat that acted as a catchment area for finer sediments, therefore facilitating the succession towards a higher elevated habitat with salt marsh vegetation establishment. Hence, spatio-temporal sediment dynamics decreased site quality for intertidal predators due to a reduction in feeding areas over time, and a change in physical sediment properties that alter the macrobenthos species occurrence and population biomass. This study thus illustrates that sediment transport dynamics may affect the functioning of coastal shallow soft-sediment habitats, like coastal lagoons. The presented macrobenthos species response models provide a tool to assist in management actions that enable the conservation of cohesive low intertidal habitats that provide a high food supply to shorebirds, fish and macrocrustaceans.     

Regime shifts in vegetation composition of Baltic Sea coastal lagoons

Vegetation communities, morphometric and water quality variables were sampled in 62 undisturbed coastal lagoons along a natural land-uplift gradient in the northern Baltic Sea. The lagoons had a morphological inlet threshold reflecting habitat isolation (i.e. the diminished connectedness of the lagoon to the sea) and located in different parts of the archipelago (corresponding to altering wave exposure). We used indirect multivariate methods to find changes in vegetation composition, and axes derived from the analyses were used in correlation and stepwise multiple regression analyses together with environmental variables. Habitat isolation proved to be the strongest predictor for vegetation composition. To identify significant change-points we used a method, which detects regime shifts by accounting for differences in chronological series and gives a regime shift index. Significant shifts in habitat isolation, average depth and total nitrogen were followed by shifts in species variables (i.e. dominant species, cover and species richness) and salinity, total phosphorus and turbidity. Of the species, especially Chara tomentosa showed a shift of high magnitude. Also a shift in wave exposure mirroring position of lagoons in the archipelago structured the species, but this division was seen only for less isolated lagoons. Our results suggest that lagoons are primarily structured by habitat isolation forming two structurally different regimes: one of less isolated lagoons dominated by a diverse array of vascular plants and marine algae of both outer and inner archipelago characters, and one with isolated lagoons dominated by high vegetation cover and dominance of Chara. In addition, vegetation seemed to stabilize water quality in the isolated regime by reducing turbidity and phosphorus, indicating a potential feed-back mechanism and a shift in structuring disturbances from abiotic to biotic factors with habitat isolation.     

Hydrological characteristics of three North African coastal lagoons: insights from the MELMARINA project

Hydrological and hydrodynamic characteristics are important controls in all wetlands including coastal lagoons. Enhanced understanding of lagoon functioning can be obtained through the acquisition and interpretation of hydrological, meteorological and related data. The MELMARINA Project investigated links between hydrological and ecological conditions within North African coastal lagoons. It employed three primary sites: Merja Zerga in Morocco, Ghar El Melh in Tunisia and Lake Manzala in Egypt. Hydrological, meteorological and related data were acquired for these lagoons. Data included precipitation, evaporation, wind speed and direction, freshwater discharges into the lagoons, tides beyond the lagoons in the open sea, lagoon bathymetry and time series of lagoon water levels/depths. Data were acquired from secondary sources (including online archives) and targeted field survey and monitoring programmes. Interpretation of these data provides insights into the hydrological functioning of the lagoons and contributed to the modelling requirements of MELMARINA. The functioning of Merja Zerga is dominated by the exchange of water between the Atlantic and the lagoon. Large, tidally induced oscillations in water level are responsible for the inundation of extensive inter-tidal mudflats whilst the rapid replacement of water by exchanges with the sea diminishes the influence of freshwater inflows and winter rainfall. The smaller Mediterranean tides reduce the magnitude of lagoon–sea exchanges and result in much smaller water level oscillations within Ghar El Melh. As a result, this lagoon lacks the inter-tidal environments found within the Moroccan site and hydrodynamic conditions are more likely influenced by wind set up. Although freshwater inflows to Ghar El Melh are smaller than those in Merja Zerga, their effects, coupled with heavy winter rainfall, can persist due to longer residence times of water within the lagoon. Freshwater inflows are central to the functioning of Lake Manzala. Large discharges of relatively freshwater are provided by major drains which cross the Nile Delta. These influence lake water levels and are responsible for the freshwater conditions within large parts of the lake. The small tidal range of the eastern Mediterranean, coupled with constricted connections with the sea, reduces the influence of lake–sea exchanges and tidally induced water level oscillations within Lake Manzala. Guest editors: J. R. Thompson & R. J. Flower Hydro-ecological Monitoring and Modelling of North African Coastal Lagoons     

Comparative estuarine and marine migration ecology of Atlantic salmon and steelhead: blue highways and open plains

This synthesis focuses on the estuarine and ocean ecology of Atlantic salmon (Salmo salar) and steelhead (Oncorhynchus mykiss) across their southern ranges in North America. General life history and ecology share many common traits including iteroparity, duration of freshwater (0–3 years) and marine (2–5 years) rearing, ocean emigration at relatively large sizes and strong surface orientation compared to other salmonids. Despite parallels in life history and anthropogenic pressures, several differences emerged for these species. First, steelhead have greater life history diversity and a broader geographic distribution. Generally, estuary habitats serve as short-term migration corridors for both species. However, some steelhead populations used lagoon habitat in south-coast watersheds. While both species are epipelagic, Atlantic salmon exhibit more vertical migration. Atlantic salmon tend to follow migratory highways—relatively narrow bands along the coastal shelf, then crossing the Atlantic to feed inshore and in fjords of West Greenland. Conversely, steelhead exit the coastal shelf quickly, dispersing across the Pacific, and rarely use coastal environments. Despite inhabiting rivers in warm dry Mediterranean climates, the extended range and stability of southern steelhead distribution is likely buffered by cool upwelled waters of the California Current. Whereas Atlantic salmon populations are restricted by warmer Northwest Atlantic circulation patterns lacking cool upwelling with greater susceptibility to warming associated with climate change. Determining the rate of marine habitat changes in the Atlantic and Pacific Oceans is important to the conservation of these species, including subtleties of temporal and spatial habitat use, and adaptability to ocean ecosystems under climate change.     

Application of specific exergy to macrophytes as an integrated index of environmental quality for coastal lagoons

This work aims to explore the application of specific exergy on macrophytes as an integrated index to assess ecosystem health in coastal lagoons, and to analyse its possible application in view of the implementation of the Water Framework Directive of the European Union (European Commission, 2000). Exergy and specific exergy are calculated as a function of the biomass multiplied by a weighting factor (β), which express the quantity of information embedded in the biomass. Until now only few general values of β have been published. Therefore, we have extended the calculation of β-values for 244 seaweed and seagrass species which are common in Mediterranean coastal lagoons. The estimated β-values have been then compared with macrophyte-based indicators which have been recently developed, namely the Ecological Evaluation Index and the IFREMER classification scheme. Overall, we found a good agreement between β-values and macrophyte indicators. Furthermore, the specific exergy was calculated for 71 sites in coastal lagoons of Southern France and compared with existing classification schemes, finding a good agreement between them. As a result, we argue that specific exergy may be used as an integrated index that is able to synthesize and complement existing approaches.     

Methodologies for measuring and modelling change in coastal saline lagoons under historic and accelerated sea-level rise,Suffolk coast,eastern England

Thorough assessment of vulnerable coastal habitats, impacted by sea-level rise and anthropogenic pressures, requires both the accurate establishment of the evidence base for current status and scientifically-informed forward planning of expected future status. Coastal saline lagoons are transitional, ephemeral habitats of considerable conservation interest; under European legislation their status requires on-going maintenance of ‘favourable status’. Over decadal timescales, the seaward barriers that enclose saline lagoons migrate progressively landwards. Geo-referenced and digitised historic maps and aerial photographs are used to create a detailed trajectory of barrier migration and loss of lagoon area for three saline ‘broads’ on the rapidly retreating coastline of Suffolk, eastern England. The SCAPE shoreline response model is then employed to extend this trajectory, under a range of sea-level rise scenarios, to 2050 and 2095 and to predict saline lagoon ‘time to extinction’. Loss rates are likely to accelerate considerably after 2015 and a fundamental revision of UK saline lagoon creation targets is urgently required. The approach is generic and could be used to assess the evolutionary trajectories for other vulnerable coastal habitats, under a range of near-future environmental change scenarios.     

Body shape and size divergence among populations of Poecilia vivipara in coastal lagoons of south-eastern Brazil

Geometric shape analyses were used to study body shape and size variation among populations of the livebearing fish Poecilia vivipara inhabiting the recently formed coastal lagoons of Grussaí and Iquipari in Northern Rio de Janeiro State, Brazil. The largest components of morphological variation among females were between different habitats in the same lagoon, whereas for males there were larger differences between lagoons than between habitats. The shape differences were mostly localized in the head region and midbody, which indicated different patterns of locomotion and foraging behaviour optimized for the habitat experienced by each population. The pattern of size variation was similar to that of size-independent shape variation.     

Food Sources of the Teleost Eucinostomus argenteus in Two Coastal Lagoons of Brazil

Eucinostomus argenteus is widely distributed along the Brazilian coast where it enters bays and lagoons. Imboacica and Cabiúnas are small coastal lagoons located in the southeastern coast of Brazil and in both localities E. argenteus is considered as a constant species. The diet of specimens collected between July 1991 through April 1993 was analysed by frequency of occurrence, numeric and volumetric methods. The predominant items ingested differed in each lagoon. In Imboacica lagoon, the stomach content comprised mainly of algae, polychaeta, detritus and sand particles, however in Cabiúnas lagoon calanoid copepods and shrimp larvae. Distinct features of the aquatic communities of the lagoons are discussed as possible causes for the differences observed.     

The Implications of Habitat Management on the Population Viability of the Endangered Ohlone Tiger Beetle (Cicindela ohlone) Metapopulation

Despite their role in providing ecosystem services, insects remain overlooked in conservation planning, and insect management approaches often lack a rigorous scientific basis. The endangered Ohlone tiger beetle (Cicindela ohlone) occurs in a 24-km² area in Santa Cruz County, California. The once larger metapopulation now consists of subpopulations inhabiting five patches of coastal prairie where it depends on bare ground for mating, foraging, and oviposition. Human activities have eliminated natural disturbances and spread invasive grasses, reducing C. ohlone''s bare-ground habitat. Management actions to restore critical beetle habitat consist of cattle and horse grazing, maintaining slow bicycle speeds on occupied public trails, and artificial creation of bare-ground plots. Recreational biking trails help maintain bare ground, but can cause beetle mortality if left unregulated. We tracked C. ohlone survivorship and estimated fecundity for three years. We then constructed a stage-structured population projection matrix model to estimate population viability among the five patches, and to evaluate the success of management interventions. We demonstrate that habitat creation, regulation of bicycle speed, and migration between patches increase C. ohlone survival and population viability. Our results can be directly applied to management actions for conservation outcomes that will reduce species extinction risk and promote recolonization of extirpated patches.     

Effects of Photochemical Transformations of Dissolved Organic Matter on Bacterial Metabolism and Diversity in Three Contrasting Coastal Sites in the Northwestern Mediterranean Sea during Summer

The effects of phototransformation of dissolved organic matter (DOM) on bacterial growth, production, respiration, growth efficiency, and diversity were investigated during summer in two lagoons and one oligotrophic coastal water samples from the Northwestern Mediterranean Sea, differing widely in DOM and chromophoric DOM concentrations. Exposure of 0.2-μm filtered waters to full sun radiation for 1 d resulted in small changes in optical properties and concentrations of DOM, and no changes in nitrate, nitrite, and phosphate concentrations. After exposure to sunlight or dark (control) treatments, the water samples were inoculated with the original bacterial community. Phototransformation of DOM had contrasting effects on bacterial production and respiration, depending on the water’s origin, resulting in an increase of bacterial growth efficiency for the oligotrophic coastal water sample (120%) and a decrease for the lagoon waters (20 to 40%) relative to that observed in dark treatments. We also observed that bacterial growth on DOM irradiated by full sun resulted in changes in community structure of total and metabolically active bacterial cells for the three locations studied when compared to the bacteria growing on un-irradiated DOM, and that changes were mainly caused by phototransformation of DOM by UV radiation for the eutrophic lagoon and the oligotrophic coastal water and by photosynthetically active radiation (PAR) for the mesoeutrophic lagoon. These initial results indicate that phototransformation of DOM significantly alters both bacterial metabolism and community structure in surface water for a variety of coastal ecosystems in the Mediterranean Sea. Further studies will be necessary to elucidate a more detailed appreciation of potential temporal and spatial variations of the effects measured.     

Lack of consistency between the trophic interrelationships of five sparid species in two adjacent central Mediterranean coastal lagoons

Both interspecific and intraspecific inter-lagoon differences, between the central Mediterranean coastal lakes of Fogliano and Caprolace, in the trophic patterns of the examined species Diplodus annularis, Diplodus puntazza, Diplodus sargus, Lithognathus mormyrus and Sparus aurata were revealed by means of correspondence analysis. The most evident inter-lagoon qualitative and quantitative diet changes were observed in S. aurata . Feeding similarities among species were synthesized for each lake by means of multidimensional scaling. Trophic interrelationships among sparid fish were different in the two lagoons, as a direct consequence of diet variations in each species. Such differences are interpreted as possibly reflecting differences in the overall structure of the benthic communities. Different feeding models could be identified, each corresponding to a peculiar adaptive strategy for the consumption of lagoon benthic resources. The use of benthophagous fish feeding habits as a tool for the monitoring of the structure and the dynamics of coastal lagoon communities is discussed.