Phylogenetic diversity analysis of subterranean hot springs in Iceland

Geothermal energy has been harnessed and used for domestic heating in Iceland. In wells that are typically drilled to a depth of 1,500 to 2,000 m, the temperature of the source water is 50 to 130 degrees C. The bottoms of the boreholes can therefore be regarded as subterranean hot springs and provide a unique opportunity to study the subterranean biosphere. Large volumes of geothermal fluid from five wells and a mixture of geothermal water from 50 geothermal wells (hot tap water) were sampled and concentrated through a 0.2-microm-pore-size filter. Cells were observed in wells RG-39 (91.4 degrees C) and MG-18 (71.8 degrees C) and in hot tap water (76 degrees C), but no cells were detected in wells SN-4, SN-5 (95 to 117 degrees C), and RV-5 (130 degrees C). Archaea and Bacteria were detected by whole-cell fluorescent in situ hybridization. DNAs were extracted from the biomass, and small-subunit rRNA genes (16S rDNAs) were amplified by PCR using primers specific for the Archaea and Bacteria domains. The PCR products were cloned and sequenced. The sequence analysis showed 11 new operational taxonomic units (OTUs) out of 14, 3 of which were affiliated with known surface OTUs. Samples from RG-39 and hot tap water were inoculated into enrichment media and incubated at 65 and 85 degrees C. Growth was observed only in media based on geothermal water. 16S rDNA analysis showed enrichments dominated with Desulfurococcales relatives. Two strains belonging to Desulfurococcus mobilis and to the Thermus/Deinococcus group were isolated from borehole RG-39. The results indicate that subsurface volcanic zones are an environment that provides a rich subsurface for novel thermophiles.     

Quantitative food web analysis supports the energy-limitation hypothesis in cave stream ecosystems

Energy limitation has long been the primary assumption underlying conceptual models of evolutionary and ecological processes in cave ecosystems. However, the prediction that cave communities are actually energy-limited in the sense that constituent populations are consuming all or most of their resource supply is untested. We assessed the energy-limitation hypothesis in three cave streams in northeastern Alabama (USA) by combining measurements of animal production, demand, and resource supplies (detritus, primarily decomposing wood particles). Comparisons of animal consumption and detritus supply rates in each cave showed that all, or nearly all, available detritus was required to support macroinvertebrate production. Furthermore, only a small amount of macroinvertebrate prey production remained to support other predatory taxa (i.e., cave fish and salamanders) after accounting for crayfish consumption. Placing the energy demands of a cave community within the context of resource supply rates provided quantitative support for the energy-limitation hypothesis, confirming the mechanism (limited energy surpluses) that likely influences the evolutionary processes and population dynamics that shape cave communities. Detritus-based surface ecosystems often have large detrital surpluses. Thus, cave ecosystems, which show minimal surpluses, occupy the extreme oligotrophic end of the spectrum of detritus-based food webs.     

Drift of stream invertebrates below a cave source

Stream invertebrate drift below the cave source of South Branch Creek, Minnesota, generally increased rapidly. Ephemeroptera and Trichoptera increased rapidly and then decreased at the lower stations (to 430 m) below the cave. Chironomidae drift, in high numbers but low biomass because of their small size, increased fairly rapidly and leveled out at the lowermost stations. Gastropods increased slowly below the cave, reached a maximum, then decreased somewhat at the lowermost station. Drifting oligochaetes, small in size but in very large numbers, increased more slowly below the cave and appeared not to have reached a maximum at the lowermost station. It was concluded that, in general, drift increases fairly rapidly below the stream origin and fluctuates in the upper reaches, probably reflecting benthic population abundance and local ecological conditions, before attaining equilibria downstream, rather than increasing linearly due to cumulative effects. Paper no. 11,172 Scientific Journal Series, Minnesota Agricultural Experiment Station, St. Paul, Minnesota 55108 Paper no. 11,172 Scientific Journal Series, Minnesota Agricultural Experiment Station, St. Paul, Minnesota 55108     

Infestation of African savanna ecosystems by subterranean termites

This review is an analysis of the dimensions of termite infestation in African savannas. The aim of this work is to draw the attention of ecologists, conservationists, policy makers and farmers to the current and future threats of subterranean termites to the functioning and sustainability of such ecosystem habitats. This study analyzes and describes termite problem (questionable changes in density and assemblage structure) in selected African savannah ecosystems, synthesizes information on the effects of various human induced habitat disturbance regimes on termites’ assemblage structure, predators, nests and feed resources to generate hypotheses relating termite infestation with anthropogenic activities; it describes and critiques existing termite management practices. The review is suggestive that the infestation and resultant undesirable effects of subterranean termites in African savannahs are largely a consequence of the inappropriate savannah management practices (overgrazing, indiscriminate tree cutting and overhunting) undertaken by humans in pursuit of various livelihood options. Based on the evidence presented herein, we hypothesized that (1) human induced habitat disturbance in savanna ecosystems alters the feeding group composition of termites’ assemblages, favoring grass harvesters and polyphagus termite feeders that forage on more abundant food items, paying little attention to rarer food items and (2) habitat disturbance through activities like heavy grazing and overhunting results in decline in the populations of both macro and microscopic termite predators, which eventually enhances the proliferation of termite populations, escalates the density of termite nests particularly epigeal mounds and intensifies consumption of herbaceous savannah vegetation. The review calls for dedicated efforts to develop ecological thresholds of savannah biotic and abiotic ecosystem components in which human induced disturbance regimes trigger the destructive behavior of termites. This would provide information that will act as a precautionary savannah habitat monitoring and decision support tool to prevent future infestation of savannah habitats with termites. Also, the review shows that majority of the termite control practices are ineffective, ecologically unsustainable and above all, do not address the root cause of termite infestation and thus merely provide temporary relief to the problem. As such, termite control methods that attempt to enhance proliferation of termite predators need to be studied, developed and emphasized. This review reveals that human induced habitat disturbance depletes termites’ predator populations, leading to proliferation of termite populations particularly grass harvesters that intensify their consumption on grass biomass and eventually contribute to denudation of herbaceous vegetation cover in savannah ecosystems.     

Response diversity determines the resilience of ecosystems to environmental change

A growing body of evidence highlights the importance of biodiversity for ecosystem stability and the maintenance of optimal ecosystem functionality. Conservation measures are thus essential to safeguard the ecosystem services that biodiversity provides and human society needs. Current anthropogenic threats may lead to detrimental (and perhaps irreversible) ecosystem degradation, providing strong motivation to evaluate the response of ecological communities to various anthropogenic pressures. In particular, ecosystem functions that sustain key ecosystem services should be identified and prioritized for conservation action. Traditional diversity measures (e.g. ‘species richness’) may not adequately capture the aspects of biodiversity most relevant to ecosystem stability and functionality, but several new concepts may be more appropriate. These include ‘response diversity’, describing the variation of responses to environmental change among species of a particular community. Response diversity may also be a key determinant of ecosystem resilience in the face of anthropogenic pressures and environmental uncertainty. However, current understanding of response diversity is poor, and we see an urgent need to disentangle the conceptual strands that pervade studies of the relationship between biodiversity and ecosystem functioning. Our review clarifies the links between response diversity and the maintenance of ecosystem functionality by focusing on the insurance hypothesis of biodiversity and the concept of functional redundancy. We provide a conceptual model to describe how loss of response diversity may cause ecosystem degradation through decreased ecosystem resilience. We explicitly explain how response diversity contributes to functional compensation and to spatio‐temporal complementarity among species, leading to long‐term maintenance of ecosystem multifunctionality. Recent quantitative studies suggest that traditional diversity measures may often be uncoupled from measures (such as response diversity) that may be more effective proxies for ecosystem stability and resilience. Certain conclusions and recommendations of earlier studies using these traditional measures as indicators of ecosystem resilience thus may be suspect. We believe that functional ecology perspectives incorporating the effects and responses of diversity are essential for development of management strategies to safeguard (and restore) optimal ecosystem functionality (especially multifunctionality). Our review highlights these issues and we envision our work generating debate around the relationship between biodiversity and ecosystem functionality, and leading to improved conservation priorities and biodiversity management practices that maximize ecosystem resilience in the face of uncertain environmental change.     

Phylogenetic diversity and the functioning of ecosystems

Phylogenetic diversity (PD) describes the total amount of phylogenetic distance among species in a community. Although there has been substantial research on the factors that determine community PD, exploration of the consequences of PD for ecosystem functioning is just beginning. We argue that PD may be useful in predicting ecosystem functions in a range of communities, from single-trophic to complex networks. Many traits show a phylogenetic signal, suggesting that PD can estimate the functional trait space of a community, and thus ecosystem functioning. Phylogeny also determines interactions among species, and so could help predict how extinctions cascade through ecological networks and thus impact ecosystem functions. Although the initial evidence available suggests patterns consistent with these predictions, we caution that the utility of PD depends critically on the strength of phylogenetic signals to both traits and interactions. We advocate for a synthetic approach that incorporates a deeper understanding of how traits and interactions are shaped by evolution, and outline key areas for future research. If these complexities can be incorporated into future studies, relationships between PD and ecosystem function bear promise in conceptually unifying evolutionary biology with ecosystem ecology.     

Aliens in caves: the global dimension of biological invasions in subterranean ecosystems

Alien species are a significant threat to natural ecosystems and human economies. Despite global efforts to address this challenge, the documented number of alien species is rapidly increasing worldwide. However, the magnitude of the impact of alien species may vary significantly across habitats. For example, some habitats are naturally less prone to biological invasions due to stringent abiotic and biotic characteristics, selecting for a limited number of introduced species possessing traits closely related to the native organisms. Subterranean ecosystems are quintessential examples of habitats with strong environmental filters (e.g. lack of light and scarcity of food), driving convergent adaptations in species that have successfully adapted to life in darkness. Despite these stringent environmental constraints, the number of records of alien species in subterranean ecosystems has increased in recent decades, but the relevant literature remains largely fragmented and mostly anecdotal. Therefore, even though caves are generally considered very fragile ecosystems, their susceptibility to impacts by alien species remains untested other than for some very specific cases. We provide the first systematic literature survey to synthesise available knowledge on alien species in subterranean ecosystems globally. This review is supported by a database summarising the available literature, aiming to identify gaps in the distribution and spread of alien invertebrate species in subterranean habitats, and laying the foundations for future management practices and interventions. First, we quantitatively assessed the current knowledge of alien species in subterranean ecosystems to shed light on broader questions about taxonomic biases, geographical patterns, modes of dispersal, pathways for introductions and potential impacts. Secondly, we collected species-specific traits for each recorded alien species and tested whether subterranean habitats act as ecological filters for their establishment, favouring organisms with pre-adaptive traits suitable for subterranean life. We found information on the presence of 246 subterranean alien species belonging to 18 different classes. The dominant alien species were invertebrates, especially insects and arachnids. Most species were reported in terrestrial subterranean habitats from all continents except Antarctica. Palaearctic and Nearctic biogeographic regions represented the main source of alien species. The main routes of introductions into the recipient country are linked to commercial activities (84.3% of cases for which there was information available). Negative impacts have been documented for a small number of case studies (22.7%), mostly related to increased competition with native species. For a limited number of case studies (6.1%), management strategies were reported but the effectiveness of these interventions has rarely been quantified. Accordingly, information on costs is very limited. Approximately half of the species in our database can be considered established in subterranean habitats. According to our results, the presence of suitable traits grants access to the stringent environmental filter posed by subterranean environments, facilitating establishment in the new habitat. We recommend that future studies deepen the understanding of invasiveness into subterranean habitats, raising public and scientific community awareness of preserving these fragile ecosystems.     

Consumption of aquatic subsidies by soil invertebrates in coastal ecosystems

Routes of aquatic allochthonous inputs (aquatic subsidies) to detrital food webs are studied, as is the effect of aquatic subsidies on the functional and taxonomic structure of soil invertebrate communities in coastal ecosystems. The study took place in the coastal zone of an oxbow lake of the Pra River in the Oka Reserve. The results indicate a strong dependence of soil animals in the coastal habitats on aquatic subsidies. Isotopic analysis shows that aquatic resources enter soil food webs not only via predators feeding on flying insects or aquatic prey, but also via saprophages decomposing organic debris of aquatic origin. The contribution of aquatic subsidies to the energy balance of soil invertebrates decreases rapidly with increasing distance from the lake. The fraction of aquatic carbon in tissues of collembolans and saprophages is negligible already a few meters from the water edge. The dependence of predatory invertebrates on aquatic resources can be traced at somewhat greater distance (tens of meters).     

Linking species diversity to the functioning of ecosystems: on the importance of environmental context

There is currently much interest in understanding how loss of biodiversity might alter ecological processes vital to the functioning of ecosystems. Unfortunately, ecologists have reached little consensus regarding the importance of species diversity to ecosystem functioning because empirical studies have not demonstrated any consistent relationship between the number of species in a system and the rates of ecological processes. We present the results of a simple model that suggests there may be no single, generalizable relationship between species diversity and the productivity of an ecosystem because the relative contributions of species to productivity change with environmental context. The model determined productivity for landscapes varying in species diversity (the number of species in the colonist pool), spatial heterogeneity (the number of habitat types composing the landscape), and disturbance regimes (+/? a non‐selective mortality). Linear regressions were used to relate species diversity and productivity for each of the environmental contexts. Disturbance changed the form of the diversity/productivity relationship by reducing the slope (i.e. the change in productivity per species added to the colonist pool), but spatial heterogeneity increased or decreased this slope depending on the particular habitat types composing the landscape. The cause of the diversity/productivity relationship also changed with environmental context. The amount of variation in productivity explained by species diversity always increased with spatial heterogeneity, while the amount of variation explained by species composition (i.e. the particular species composing the colonist pool) tended to increase with disturbance. These results lead us to conclude that the form and cause of the relationship between species diversity and productivity may be highly dynamic‐changing over both time and space. Because the trends resulted from well‐known mechanisms by which environmental variation alters the absolute and relative abundances of taxa, we suspect this conclusion may be applicable to many different systems.     

Rewilding with invertebrates and microbes to restore ecosystems: Present trends and future directions

1. Restoration ecology has historically focused on reconstructing communities of highly visible taxa while less visible taxa, such as invertebrates and microbes, are ignored. This is problematic as invertebrates and microbes make up the vast bulk of biodiversity and drive many key ecosystem processes, yet they are rarely actively reintroduced following restoration, potentially limiting ecosystem function and biodiversity in these areas.
2. In this review, we discuss the current (limited) incorporation of invertebrates and microbes in restoration and rewilding projects. We argue that these groups should be actively rewilded during restoration to improve biodiversity, ecosystem function outcomes, and highlight how they can be used to greater effect in the future. For example, invertebrates and microbes are easily manipulated, meaning whole communities can potentially be rewilded through habitat transplants in a practice that we refer to as “whole‐of‐community” rewilding.
3. We provide a framework for whole‐of‐community rewilding and describe empirical case studies as practical applications of this under‐researched restoration tool that land managers can use to improve restoration outcomes.
4. We hope this new perspective on whole‐of‐community restoration will promote applied research into restoration that incorporates all biota, irrespective of size, while also enabling a better understanding of fundamental ecological theory, such as colonization and competition trade‐offs. This may be a necessary consideration as invertebrates that are important in providing ecosystem services are declining globally; targeting invertebrate communities during restoration may be crucial in stemming this decline.

     

Genetic diversity of the subterranean Gansu zokor in a semi-natural landscape

We studied the relationship between genetic diversity of the subterranean Gansu zokor Myospalax cansus and habitat variability in the Loess Plateau, Qinghai Province, China. We used a combination of geographic information systems and molecular techniques to assess the impact of habitat composition and human activities on the genetic diversity of zokor populations in this semi-natural landscape. Although they occurred relatively infrequently in the landscape, woodland and high-coverage grassland habitats were the main positive contributors to the genetic diversity of zokor populations. Rural residential land, plain agricultural land and low-coverage grassland had a negative effect on genetic diversity. Hilly agricultural land and middle-coverage grassland had little impact on zokor genetic diversity. There were also interactions between some habitat types, that is, habitat types with relatively better quality together promoted conservation of genetic diversity, while the interaction between (among) bad habitat types made situations worse. Finally, habitat diversity, measured as patch richness and Shannon's diversity index, was positively correlated with the genetic diversity. These results demonstrated that: (1) different habitat types had different effects on the genetic diversity of zokor populations and (2) habitat quality and habitat heterogeneity were important in maintaining genetic diversity. Habitat composition was closely related to land use thus emphasizing the importance of human activities on the genetic diversity of subterranean rodent populations in this semi-natural landscape. Although the Gansu zokor was considered to be a pest species in the Loess Plateau, our study provides insights for the management and conservation of other subterranean rodent species.     

Ecosystem engineering effects on species diversity across ecosystems: a meta‐analysis

Ecosystem engineering is increasingly recognized as a relevant ecological driver of diversity and community composition. Although engineering impacts on the biota can vary from negative to positive, and from trivial to enormous, patterns and causes of variation in the magnitude of engineering effects across ecosystems and engineer types remain largely unknown. To elucidate the above patterns, we conducted a meta‐analysis of 122 studies which explored effects of animal ecosystem engineers on species richness of other organisms in the community. The analysis revealed that the overall effect of ecosystem engineers on diversity is positive and corresponds to a 25% increase in species richness, indicating that ecosystem engineering is a facilitative process globally. Engineering effects were stronger in the tropics than at higher latitudes, likely because new or modified habitats provided by engineers in the tropics may help minimize competition and predation pressures on resident species. Within aquatic environments, engineering impacts were stronger in marine ecosystems (rocky shores) than in streams. In terrestrial ecosystems, engineers displayed stronger positive effects in arid environments (e.g. deserts). Ecosystem engineers that create new habitats or microhabitats had stronger effects than those that modify habitats or cause bioturbation. Invertebrate engineers and those with lower engineering persistence (<1 year) affected species richness more than vertebrate engineers which persisted for >1 year. Invertebrate species richness was particularly responsive to engineering impacts. This study is the first attempt to build an integrative framework of engineering effects on species diversity; it highlights the importance of considering latitude, habitat, engineering functional group, taxon and persistence of their effects in future theoretical and empirical studies.     

再论生物多样性与生态系统的稳定性

本文在简述生物多样性与生态系统稳定性研究动态的基础上,从生物多样性和稳定性的概念出发,指出忽视多样性和稳定性的生物组织层次可能是造成观点纷争的根源之一。特定生物组织层次的稳定性可能更多地与该层次的多样性特征相关,探讨多样性和稳定性的关系应从不同的生物组织层次上进行,抗动是生态系统多样性与稳定性关系悖论中的重要因子,如果根据扰动的性质,把生态系统（或其他组织层次）区分为受非正常外力干扰和受环境因子时间异质性波动干扰2类系统,稳定性的4个内涵可以理解为：对于受非正常外力干扰的系统而言,抵抗力和恢复力是稳定性适宜的测度指标;对于受环境因子时间异质性波动干扰和系统而言。利用持久性和变异性衡量系统的稳定性则更具实际意义。结合对群落和种群层次多样性与稳定性相关机制的初步讨论,本文认为;在特定的前提下,多样性可以导致稳定性。     

Landscape approaches to the analysis of aquatic ecosystems

1. In the mid-1970s, Hynes (1975) wrote eloquently about the complex interactions between aquatic and terrestrial systems. Central theories in stream ecology developed thereafter have dealt with the longitudinal flow of energy, materials and organisms in streams, and, with the exception of the flood pulse concept (Junk, Bayley & Sparks, 1989), have largely ignored areas outside the riparian zone. The structure of the upland and activities occurring there play a more important part than previously recognized in regulating community structure and ecosystem processes in streams.
2. These new perspectives are made possible by developments in hierarchy theory, patch dynamics, and the refinement of tools used to quantify spatial and temporal heterogeneity.
3. Geographical information systems (GIS), image processing technology and spatial statistical techniques allow quantitative assessment of lateral, longitudinal and vertical components of the landscape that interact at several spatial and temporal scales to influence streams. When GIS is used in concert with geostatistics, multivariate statistics, or landscape models, complex relationships can be elucidated and predicted.
4. To a certain extent, the tools discussed above have only automated functions that were previously performed manually. This suite of tools has improved the ability of aquatic ecologists to examine relationships and test theories over larger, more heterogeneous regions than were previously possible.
5. At the local, state and federal level, management and regulatory frameworks are currently being re-evaluated to incorporate this new perspective in resource management and policy decision making.
6. We will discuss current and future trends in technologies and tools used for aquatic ecosystem research, and the use of techniques as they are applied in these regional assessments are also discussed.