On the unfitness of natural selection to explain sexual reproduction, and the difficulties that remain.

In its essence, the explanatory potential of the theory of natural selection is based on the iterative process of random production and variation, and subsequent non-random, directive selection. It is shown that within this explanatory framework, there is no place for the explanation of sexual reproduction. Thus in Darwinistic literature, sexual reproduction - one of nature's most salient characteristics - is often either assumed or ignored, but not explained. This fundamental and challenging gap within a complete naturalistic understanding of living beings calls for the need of a cybernetic account for sexual reproduction, meaning an understanding of the dynamic and creative potential of living beings to continuously and autonomously produce new organisms with unique and specific constellations.     

Existence of two sexual races in the planarian species switching between asexual and sexual reproduction

In certain planarian species that are able to switch between asexual and sexual reproduction, determining whether a sexual has the ability to switch to the asexual state is problematic, which renders the definition of sexuals controversial. We experimentally show the existence of two sexual races, acquired and innate, in the planarian Dugesia ryukyuensis. Acquired sexuals used in this study were experimentally switched from asexuals. Inbreeding of acquired sexuals produced both innate sexuals and asexuals, but inbreeding of innate sexuals produced innate sexuals only and no asexuals. Acquired sexuals, but not innate sexuals, were forced to become asexuals by ablation and regeneration (asexual induction). This suggests that acquired sexuals somehow retain asexual potential, while innate sexuals do not. We also found that acquired sexuals have the potential to develop hyperplastic and supernumerary ovaries, while innate sexuals do not. In this regard, acquired sexuals were more prolific than innate sexuals. The differences between acquired and innate sexuals will provide a structure for examining the mechanism underlying asexual and sexual reproduction in planarians.     

利用红外相机调查湖南高望界国家级自然保护区鸟兽多样性

<正>湖南高望界国家级自然保护区(以下简称高望界保护区)位于湖南省湘西土家族苗族自治州古丈县东北部,东接高峰乡,南连岩头寨乡,西临罗依溪镇,北傍酉水(图1),地理坐标109°58′23″–110°14′38″E,28°36′32″–28°45′39″N,总面积17,169.8 ha。高望界保护区地处中国17个具有国际意义的生物多样性关键地区《(中国生物多样性国情研究报告》编写组,1998)之一的武陵山区核心地带,也是全球200个重要生态区的范围之一(OlsonDinerstein,1998)。境内地貌结构独特,地势崎岖陡     

Using computational modeling to investigate sperm navigation and behavior in the female reproductive tract

The processes by which individual sperm cells navigate the length and complexity of the female reproductive tract and then reach and fertilize the oocyte is fascinating. Numerous complex processes potentially influence the transport of spermatozoa within the tract, resulting in a regulated supply of spermatozoa to the oocytes at the site of fertilization. Despite significant differences between species, breeds, and individuals, these processes converge to ensure that a sufficient number of high quality spermatozoa reach the oocytes, resulting in successful fertilization without a significant risk of polyspermy. Different factors, such as the physical complexity of the oviductal environment, changing swimming patterns, capacitation, chemotactic and thermotactic attraction, attachment and detachment from the oviductal epithelium, interactions with local oviductal secretions, individual variations in spermatozoa and subpopulations, peristaltic contractions, and the movement of fluid have all been theorized to influence the transport of spermatozoa to the site of fertilization. However, the predominance of each factor is not fully understood. Computational modeling provides a useful method for combining knowledge about the individual processes in complex systems to help understand the relative significance of each factor. The process of constructing and validating an agent-based computational model of sperm movement and transport within the oviductal environment is described in this report. Spermatozoa are modeled as individual cells with a set of behavioral rules defining how they interact with their local environment and regulate their internal state. The inclusion or potential exclusion of each factor is discussed, along with problems identifying parameters and defining behavioral rules from available literature. Finally, the benefits and limitations of the model are described.     

The relative importance of sexual and asexual reproduction in the spread of Spartina alterniflora using a spatially explicit individual-based model

This study investigates a spatially explicit, individual-based model for simulating the spread of invasive smooth cordgrass (Spartina alterniflora) in Yancheng coastal wetlands from 1995 to 2010. The model, which considers the landscape heterogeneity and changes detected by remote sensing, also reveals the relative importance of sexual and asexual reproduction in the spread by global sensitivity analysis. The model was verified as suitable for simulating the range expansion of S. alterniflora. The results show that: (1) although seedling recruitment is low, it significantly contributes to the range expansion of S. alterniflora. Removing sexual propagation greatly reduces the expansion rate. Rapid expansion requires both sexual and asexual reproduction; (2) in the global sensitivity analysis, the most significant affecters of S. alterniflora invasion were seed dispersal distance, adult survival rate and asexual recruitment survival rate. Sexual propagation contributes much more significantly to quick range expansion than asexual reproduction, but asexual reproduction is the main source of recruitment. Invasion control strategies should target a single reproduction mode. Here, limiting the germination and dispersal of seeds is suggested as a realistic strategy for controlling and managing invasion by this species.     

Limited resources and evolutionary learning may help to understand the mistimed reproduction in birds caused by climate change

We present an agent-based model inspired by the Evolutionary Minority Game (EMG), albeit strongly adapted, to the case of competition for limited resources in ecology. The agents in this game become able, after some time, to predict the a priori best option as a result of an evolution-driven learning process. We show that a self-segregated social structure can emerge from this process, i.e., extreme learning strategies are always favoured while intermediate learning strategies tend to die out. This result may contribute to understanding some levels of organization and cooperative behaviour in ecological and social systems. We use the ideas and results reported here to discuss an issue of current interest in ecology: the mistimings in egg laying observed for some species of bird as a consequence of their slower rate of adaptation to climate change in comparison with that shown by their prey. Our model supports the hypothesis that habitat-specific constraints could explain why different populations are adapting differently to this situation, in agreement with recent experiments.     

Uncoupling of sexual reproduction from homologous recombination in homozygous Oenothera species

Salient features of the first meiotic division are independent segregation of chromosomes and homologous recombination (HR). In non-sexually reproducing, homozygous species studied to date HR is absent. In this study, we constructed the first linkage maps of homozygous, bivalent-forming Oenothera species and provide evidence that HR was exclusively confined to the chromosome ends of all linkage groups in our population. Co-segregation of complementary DNA-based markers with the major group of AFLP markers indicates that HR has only a minor role in generating genetic diversity of this taxon despite its efficient adaptation capability. Uneven chromosome condensation during meiosis in Oenothera may account for restriction of HR. The use of plants with ancient chromosomal arm arrangement demonstrates that limitation of HR occurred before and independent from species hybridizations and reciprocal translocations of chromosome arms-a phenomenon, which is widespread in the genus. We propose that consecutive loss of HR favored the evolution of reciprocal translocations, beneficial superlinkage groups and ultimately permanent translocation heterozygosity.     

Resource competition and patterns of sexual reproduction in sympatric sibling rotifer species

We present experimental data on the reproduction patterns of three sympatric sibling rotifer species, belonging to the Brachionus plicatilis complex, as they compete for food. Variation existed in the amount and pattern of sexual reproduction among the three cyclical parthenogenetic species. Competitive exclusion between the three Brachionus species was related to a higher investment in sexual reproduction by the inferior competitor. In general, no correlation was found between sexual reproduction and population density in a given species. However, when pairs of competing species were compared, a negative relationship between sexual investment differences (between species) and average population density differences was frequently found. From the results we conclude that: (1) the characteristic sexual pattern of each species has some implications for the competitive outcome; (2) allocation of resources into sexual reproduction does not mediate coexistence; and (3) the response of sexual reproduction to competitive interaction is unlikely to determine competition outcome. Nevertheless, our results suggest that the competitively inferior species invests more in sexual reproduction, as a response to resource limitation, which would accelerate its exclusion.     

Using HPLC pigment analysis to investigate phytoplankton taxonomy: the importance of knowing your species

Phytoplankton microscopic enumerations and HPLC analyses of their pigments were performed weekly for a complete year at a coastal station in the English Channel. The taxonomic composition of the phytoplankton community was assessed using the HPLC results combined with the mathematical tool CHEMTAX in two different ways. Firstly, without using the species level taxonomic information obtained at the microscopic level (blind analyses), and secondly by including the information from the microscopic taxonomic analysis (directed analyses). The results indicate that, due to the particular pigment composition of some species (for example, the dinoflagellate, Karenia mikimotoi and the haptophyte, Phaeocystis pouchetii), a blind analysis would result in very significant errors in the taxonomic determination of the bloom events at this station. Major blooms of Karenia mikimotoi and P. pouchetii were mistaken for blooms of diatoms on the basis of a blind HPLC-CHEMTAX analysis. Only with the information from the microscopic observations was it possible to obtain an accurate representation of the phytoplankton community.Communicated by H.-D. Franke     

Differences in binding sites of two melatonin receptors help to explain their selectivity to some melatonin analogs: a molecular modeling study

Numerous diseases have been linked to the malfunction of G-protein coupled receptors (GPCRs). Their adequate treatment requires rational design of new high-affinity and high-selectivity drugs targeting these receptors. In this work, we report three-dimensional models of the human MT(1) and MT(2) melatonin receptors, members of the GPCR family. The models are based on the X-ray structure of bovine rhodopsin. The computational approach employs an original procedure for optimization of receptor-ligand structures. It includes rotation of one of the transmembrane alpha-helices around its axis with simultaneous assessment of quality of the resulting complexes according to a number of criteria we have developed for this purpose. The optimal geometry of the receptor-ligand binding is selected based on the analysis of complementarity of hydrophobic/hydrophilic properties between the ligand and its protein environment in the binding site. The elaborated "optimized" models are employed to explore the details of protein-ligand interactions for melatonin and a number of its analogs with known affinity to MT(1) and MT(2) receptors. The models permit rationalization of experimental data, including those that were not used in model building. The perspectives opened by the constructed models and by the optimization procedure in the design of new drugs are discussed.     

Using long-term monitoring to investigate the changes in species composition in the harbour of Ghent (Belgium)

The macroinvertebrate community of the harbour of Ghent was studied by analysing 135 samples taken at different sampling locations from 1990 until 2008. The results showed that the current Crustacea and Mollusca communities are mainly represented, in terms of abundances, by alien species. In total, seven alien and four indigenous crustacean species were found. Mollusc diversity was higher, with a total of 14 species, four of which were alien. Macroinvertebrate diversity was very low at the beginning of the 1990s, but increased due to the improvement of the chemical water quality achieved by sanitation and stricter environmental laws. This is reflected by the dissolved oxygen concentration, which increased from an average of 2 mg/l to an average of 9 mg/l, allowing more sensitive species to establish. Since 1993, the number of alien taxa has augmented, whereas the number of native taxa has remained stable. The improvement of the chemical water quality and the simultaneous increase in total number of species were also reflected in an increase of the Multimetric Macroinvertebrate Index Flanders, which is used to assess the ecological water quality in Flanders. Due to intensive international boat traffic and the low species diversity, the harbour of Ghent is highly vulnerable for invasions. Stronger regulations and a better understanding about the contribution of shipping, shortcuts via artificial water ways, habitat degradation and environmental pollution are required to reduce the further spread of alien species.     

Using water and energy variation to explain the botanical richness pattern of Theaceae species in southern China

BackgroundEnergy and water availability are essential for biodiversity maintenance. In addition to the independent effects of water and energy on biodiversity, recent studies clarified that the effects of interaction between water and energy availability were indispensable.MethodsIn this exercise, by combining the species presence information and the environmental predictors, we produced species distribution models at 20 × 20 arc-minute resolution for 193 Theaceae species. Initially, the ordinary least square (OLS) regression was used to examine the stationary relationships between Theaceae diversity and climate. The statistical effects of water and energy on species diversity were detected using Geographically Weighted Regression analysis (GWR). Furthermore, the contour plots were used to view the statistical effects of the water and energy interaction on species diversity.ResultsThe OLS results suggested that both energy and water availability are related to Theaceae species diversity. In GWR regression, the spatial variation of energy and water showed high explanatory power to the diversity pattern of Theaceae species. The patterns in the residuals of both OLS and GWR regression varied geographically. Therefore, the results of GWR regression were kept for further analysis. The value of diversity-water slopes decrease changed from positive to negative in extremely wet regions; In extremely dry conditions, the value of diversity-energy slopes decrease faster than other regions.ConclusionsOur results support the following findings: 1) the latitudinal distribution of Theaceae species was limited by thermal tolerance, which support the freezing-tolerance hypothesis in macro-ecology; 2) Theaceae species diversity are sensitive to the instability of precipitation, while the limitation from energy availability is weak; 3) the effects of water and energy on species diversity are strong in dry regions. Those findings can provide further implications for Theaceae species conservation under climate change scenarios.     

Spatial and temporal patterns of sexual reproduction in a hybrid Daphnia species complex

Evidence for extensive interspecific hybridization among speciesof the genus Daphnia has been accumulating on a global scale.Although there is evidence for limited gene flow between taxavia hybridization, many species still maintain discrete morphologicaland molecular characteristics. We studied temporal and spatialpatterns of sexual reproduction within the Daphnia galeata–hyalina–cucullatahybrid species complex in a lake (Plußsee), located innorthern Germany. Allozyme electrophoresis allowed us to trackseasonal changes in taxon composition as well as the quantificationof back-crosses. Sexually-reproducing animals (ephippial femalesand males) were mainly found in autumn. The simultaneous presenceof sexual morphs of D. galeata and D. galeata x hyalina withthe dominant D. hyalina taxa makes recent hybridization, aswell as back-crossing, plausible. Males and ephippial femalesof D. hyalina were not back-crossed as were the parthenogeneticfemales. The low number of sexual clones of the hybrid D. galeatax hyalina might reflect its reduced fertility, although thesefew clones were detected in high densities. Only hybrid-clonesthat had a back-cross genotype (towards D. hyalina) exhibitedephippial females and males. This indicates that male and ephippialfemale production within the Daphnia taxa is not random, whichmight increase the chance for the parental Daphnia species toremain distinct.     

Using functional response modeling to investigate the effect of temperature on predator feeding rate and energetic efficiency

Temperature is one of the most important environmental parameters influencing all the biological processes and functions of poikilothermic organisms. Although extensive research has been carried out to evaluate the effects of temperature on animal life histories and to determine the upper and lower temperature thresholds as well as the optimal temperatures for survival, development, and reproduction, few studies have investigated links between thermal window, metabolism, and trophic interactions such as predation. We developed models and conducted laboratory experiments to investigate how temperature influences predator-prey interaction strengths (i.e., functional response) using a ladybeetle larva feeding on aphid prey. As predicted by the metabolic theory of ecology, we found that handling time exponentially decreases with warming, but--in contrast with this theory--search rate follows a hump-shaped relationship with temperature. An examination of the model reveals that temperature thresholds for predation depend mainly on search rate, suggesting that predation rate is primarily determined by searching activities and secondly by prey handling. In contrast with prior studies, our model shows that per capita short-term predator-prey interaction strengths and predator energetic efficiency (per capita feeding rate relative to metabolism) generally increase with temperature, reach an optimum, and then decrease at higher temperatures. We conclude that integrating the concept of thermal windows in short- and long-term ecological studies would lead to a better understanding of predator-prey population dynamics at thermal limits and allow better predictions of global warming effects on natural ecosystems.