A MaxEnt modelling approach to understand the climate change effects on the distributional range of White-bellied Sholakili Sholicola albiventris (Blanford, 1868) in the Western Ghats,India

Each species is uniquely influenced by anthropogenic climate change. Change in temperature and precipitation due to climate change may lead to species adaptation or extinction, or in some cases, a range shift. To know the influence of climate change on a restricted and endemic bird species of the Western Ghats (WG), White-bellied Sholakili (WBS) Sholicola albiventris (Blanford, 1868), we conducted a study by using species distribution modelling. We considered 73 spatial bias-corrected occurrence points of WBS along with environmental variables like the mean temperature of coldest quarter (Bio 11), precipitation of driest month (Bio 14) and mean precipitation of warmest quarter (Bio 18). We used the MaxEnt application with ENM evaluate tool in R statistical package for developing a climate model for WBS. Bio 11 was observed to be the most crucial climate variable shaping the habitat of WBS. The current study predicts that only 2823km² in WG is suitable for WBS. One-third of this area falls under the protected area network, of which 52% is becoming unsuitable to this narrow endemic due to climate warming. The model also predicts 26% to 45% habitat loss under different climate change scenarios by the 2050s.     

The identification and conservation of climate refugia for two Colombian endemic titi (Plecturocebus) monkeys

Natural resource managers face the challenge of developing conservation plans for key species and given that anthropogenic climate change (CC) effects on biodiversity are becoming increasingly evident, the new challenge is to properly incorporate CC adaptation strategies into such plans. Thus, the objective of this study is to evaluate the potential CC effects on the climatically suitable areas for two Colombian endemic titi monkeys Plecturocebus ornatus and P. caquetensis and to identify the prospective climate refugia as macro-ecological adaptation strategies for each species. A detailed ecological niche modeling (ENM) approach was applied with the maximum entropy algorithm, using presence records and different sets of bioclimatic variables describing baseline (1960–1990) and future climates (∼2070). Models of future climatic suitability were generated using projections of variables under a stabilization (RCP4.5) and business as usual (RCP8.5) scenarios with data from two general circulation models (GCMs) describing storylines of increasing (CESM1_CAM5) and decreasing (CSIRO_ACCESS1_3) rainfall patterns. The results for both species indicate that in a warmer future, opposite rainfall patterns and choice of the bioclimatic variables may lead to divergent responses on the extent and geographic distribution of their climatic niche, which varied from regions gaining, losing, and retaining suitability in potential climate refugia. Moreover, CC represents a serious threat for P. caquetensis and P. ornatus since their ranges may be largely exposed to novel climates. Their baseline climatic suitability area is projected to shrink and shift to higher elevations in the Andes mountains, and the climate refugia identified for both species are poorly covered by protected areas. Therefore, the climate refugia identified in this work and the management recommendations offered should be considered by species conservation plans to contribute to the selection of priority regions for conservation actions. The modeling approach reveals the uncertainties arising from the selection of bioclimatic variables and GCMs in ENM, which can be replicated to identify climate refugia targeting different species of conservation concern.     

Ecological analysis and environmental niche modelling of Dactylorhiza hatagirea (D. Don) Soo: A conservation approach for critically endangered medicinal orchid

The natural populations of Dactylorhiza hatagirea have been greatly affected due to incessant exploitation. As such, studies on its population attributes together with habitat suitability and environmental factors affecting its distribution are needed to be undertaken for its conservation in nature. Present study aimed at accessing an impact of anthropogenic pressure on population structure and locate suitable habitats for the conservation of this critically endangered orchid. Considerable changes in the phytosociological attributes were observed on account of the changing magnitude and extent of anthropogenic threat in their natural abode. The distribution pattern of species indicated that more than 90% of the populations exhibit substantially aggregated spatial distribution. Maximum Entropy (MaxEnt) distribution modelling algorithm was used to predict suitable habitat and potential area for its cultivation and reintroduction. Twenty-seven occurrence records, nineteen bioclimatic variables, altitude, and slope were used. MaxEnt map output gave the habitat suitability for this species and predicted its distribution in the North-Western Himalayas of India for approximately 616 km². Jackknifing indicated that maximum temperature of warmest month, annual mean temperature, mean temperature of the driest quarter, and mean temperature of the wettest quarter were the governing factors for its distribution and hence, presented a higher gain with respect to other variables. According to permutation importance, precipitation seasonality and mean temperature of wettest quarter shows the prominent impact on the habitat distribution. Results of AUC (area under curve) were statistically significant (0.940) and the line of predicted omission falls very close to an omission on training samples, validating a better run of the model. Response curves revealed a probable increase in the occurrence of D. hatagirea with an increase in mean temperature of the wettest quarter and maximum temperature of the warmest month contributed more than 50% to predicted habitat suitability. Direct field observations concurrent with predicted habitat suitability and google-earth images represent greater model thresholds for successful inception of the species. Together, the study proposes that the species can be conserved in or near its present-day natural habitats and is equally effective in determining the possible habitats for its cultivation and reintroduction.     

Does habitat heterogeneity influence taxonomic richness and abundance? A case study from a terrestrial protected area in Abu Dhabi,United Arab Emirates

Biodiversity is under enormous pressure from multiple threats including climate change, land use change, habitat alterations and hunting pressure. One way to ease this pressure on biodiversity and to mitigate the effects of above-mentioned threats, is to establish protected areas. Importance of protected increases many folds in regions that are considered as biodiversity poor regions i.e. deserts. Protected areas have long been a major pillar of biodiversity conservation strategies; the Houbara Protected Area (HPA) is one of the 13 terrestrial protected areas in Abu Dhabi Emirate officially declared in 2017. However, no information regarding the status of biodiversity in the HPA has been communicated to the research fraternity. During the present study, surveys were conducted to fill this gap. The survey area was divided in to 50 grids of 5 × 5 km² and monitoring surveys were undertaken from January to December 2016. A total of 14 bi-monthly to monthly surveys were conducted within HPA and 196 species of different taxonomical groups were recorded. A year-long survey yielded highly diversified fauna and flora from 19 different habitat types (H) 1.32, (E) 2.28, Shannon Diversity Index). We looked at the influence of habitat breadth and temperature on the species richness and abundance, results shows that in desert setup heterogeneity of habitat is not an important factor in maintaining the biodiversity as total number of individuals as well as species were similar in the grids that have different number of habitat types (df = 34.3, t = -0.472, P = 0.640). However, we did find a positive impact of mean monthly temperature on species richness (df = 154, t = 2.53, P = 0.012). Our study highlights the importance of temperature in driving species abundance and richness in protected area. Abundance and species richness are similar in protected areas indicating that protection is allowing species to explore the heterogenous habitats. Overall, we can conclude that protection is beneficial for species.     

Assessing high conservation value areas for rare,endemic and threatened (RET) species: A study in high altitude Changthang landscape of India

The Forest Stewardship Council developed the concept of High Conservation Values (HCVs) as a criteria in the forest certification process in order to promote sustainable forest management. It has six major components or values and component one and two of HCVs deal with the habitat for viable populations of “rare, endemic and threatened (RET) species” using the IUCN Red List category and other national / regional / local lists. But a consistent robust methodology for identification of these areas, does not exist. The present study tried to develop for the first time, a straight forward inclusive methodology for identification of HCVAs for the RET species on a spatio-temporal scale. A total of 50 RET and other significant species (32 flora, 10 fauna and 8 avifauna) were identified after a thorough literature review, field surveys and consultations with experts. Occurrence data of the selected species was collected from different secondary sources, field surveys, institutes and scientists who have worked on them. A 10 km grid-based approach and stratified random sampling was used for the primary GPS field surveys conducted during 2018–2019. MaxEnt species distribution model (SDM) software was used based on the occurrence data and environmental variables for identification of potential suitable habitats for the selected species. Linear support vector machine (LSVM) model was used for assessing the performance of the SDMs. The performance of each SDM has been validated through Cohen's Kappa (KAPPA), true skill statistic (TSS) and receiver operating characteristics (ROC) models. The proposed methodology addresses the urgent need for a holistic and robust set of techniques to apply the HCV toolkit. This is key to identify and map HCVAs for RET species at the landscape level and can be easily adapted to and adopted at the national, regional, state or local level in India. The methods offer an efficient, reliable approach for the application of the HCV concept, elsewhere in the world.     

Coastal waterbird eco-habitat stability assessment in Zhangjiangkou Mangrove National Nature Reserve Based on habitat function-coordination coupling

As a result of waterbird population declines, several habitat studies have been undertaken. Nonetheless, a vast majority of these studies fall short of a full assessment of the underlying relationship between functionality and coordinated development relationships between the habitat and threat variables. To comprehensively analyze the stability of the waterbird habitat in the Zhangjiangkou Mangrove National Nature Reserve (ZMNNR), this study offers a unique technique that integrates the functionality of the waterbird habitat with the coordinated development of habitat and threat variables in a GIS environment over a three-decade timeframe (1990–2020). The findings revealed that the very stable region of the research site grew by nearly 50% throughout the three-decade study period, with a substantial portion concentrated around the mangrove reserve. This growing distribution of highly stable sections in the mangrove reserve was believed to be the outcome of progressive expansion in habitat functioning and the region's counterbalanced interaction between habitat and threat variables. A comparison of stability within and beyond the mangrove reserve border found that an unbalanced link between habitat and threat variables resulted in a 23% decline in stability outside the mangrove reserve boundary. From 2020 to 2050, this deterioration was expected to worsen, eventually affecting more than half of the territory.Further investigation found that habitat type and area, ecosystem service value, habitat fragmentation, and wetness were all identified as the primary driving mechanisms influencing changes in habitat stability. Moreover, these driving forces were shown to have varied influences on changes in waterbird habitat stability. This approach's capacity to successfully analyze and discover significant regions of waterbird habitat and zones with a coordinated relationship between habitat and threat variables makes it a valuable technical reference tool to aid decision-makers in habitat conservation and eco-restoration studies.     

Temperature rise curtails activity period predicted for a winter-active forest lizard,Scincella formosensis,from subtropical areas in Taiwan

1. Temperature rise due to climate change affects seasonal activity times, leading to a discordance of phenology among species and changing the strength of interaction between species. Understanding how temperature changes will affect the length of a species’ activity period is essential in order to forecast its response to climate warming.2. We investigated the thermal physiology and monthly activity of a skink from subtropical areas in Taiwan, Scincella formosensis. In addition, we predicted its response to climate warming and potential landscape vegetation changes using a mechanistic model, Niche Mapper^TM. We incorporated the animals’ thermal traits and climatic data to simulate thermally suitable time for activity each month in two sites (open area, dense forest).3. We found that this species restricts its activity to the cool months of the year, and that juveniles emerge in June. The thermally suitable period for activity is predicted to be longer in cool months than warm months.4. Our model predicts that a 3 °C increase in temperature will curtail the thermally suitable time for activity in open areas in late spring and result in very minimal time for activity in the summer, even when dense forest is available. These results add to the growing body of literature indicating that a temperature rise will have a widespread impact on sub/tropical forest reptiles.     

Prioritizing conservation areas and vulnerability analyses of the genus Pinus L. (Pinaceae) in Mexico

Mexico hosts the highest species richness of pines (Pinus, Pinaceae) worldwide; however, the priority areas for their conservation in the country are unknown. In this study, the ecological niche of the 50 native pine species was modeled. Then, through a multi-criteria analysis, the priority areas for the conservation of the genus Pinus were identified according to the spatial patterns of richness, geographic rareness, irreplaceability, the level of vulnerability of their habitat and the status of legal protection. The results revealed that the regions with high species richness differed from those with high endemism. Also, most pine species have undergone processes of habitat degradation, having been the endemic species the most affected. The priority areas covered regions with high species richness, high endemism, and highly degraded forests, located at mountainous portions of the Baja California Peninsula, the Sierra Madre Occidental, the Sierra Madre Oriental, the Trans-Mexican Volcanic Belt, and the Sierra Madre del Sur. A low proportion of priority areas overlapped with protected areas or terrestrial regions considered priorities for biological conservation. These results suggest that conservation efforts for this genus should be focused beyond regions with high species richness and current protected areas. Besides, the priority areas identified in this study can be the basis to create biological corridors and new protected areas, which could contribute significantly to the conservation of this genus in Mexico.     

Structural and Functional Characterization of a Biliverdin-Binding Near-Infrared Fluorescent Protein From the Serpin Superfamily

Biliverdin-binding serpins (BBSs) are proteins that are responsible for coloration in amphibians and fluoresce in the near-infrared (NIR) spectral region. Here we produced the first functional recombinant BBS of the polka-dot treefrog Boana punctata (BpBBS), assembled with its biliverdin (BV) chromophore, and report its biochemical and photochemical characterization. We determined the crystal structure of BpBBS at 2.05 Å resolution, which demonstrated its structural homology to the mammalian protease inhibitor alpha-1-antitrypsin. BV interaction with BpBBS was studied and it was found that the N-terminal polypeptide (residues 19–50) plays a critical role in the BV binding. By comparing BpBBS with the available NIR fluorescent proteins and expressing it in mammalian cells, we demonstrated its potential as a NIR imaging probe. These results provide insight into the non-inhibitory function of serpins, provide a basis for improving their performance in mammalian cells, and suggest possible paths for the development of BBS-based fluorescent probes.     

Detecting low fragmented sites surrounding European protected areas – Implications for expansion of the Natura 2000 network

EU member states have set an ambitious goal of establishing additional protected areas (PAs) preserving 30 % of terrestrial land by 2030, specifying that additions should be of high ecological quality. A targeted selection of existing PA expansions into surroundings marginally fragmented by human infrastructure, may be an efficacious strategy to secure high ecological quality by maximizing PA area, accommodating species movement, and boosting climate change resilience. We used high-resolution data on effective mesh density, a metric measuring landscape fragmentation, in the vicinity of Natura 2000 PAs (N2k) to assess their potential for expansion. Our results show that contrary to most of Central Europe, mountainous and remote territories exhibit the lowest degree of fragmentation in N2k surroundings. Fragmentation in N2k surroundings is highly correlated with national population density, while economic wealth, measured by GDP per capita, plays a minor role. To address the long-standing dilemma of where scarce economic resources in nature conservation do the most-good, we conducted a country-level comparison between fragmentation in N2k surroundings and national expenditures on nature conservation relative to N2k area. Our results show a vast incongruity in resource availability for nature conservation among EU countries. Eastern European states, especially Romania, host underfunded N2k PAs while holding the highest potential for expanding N2k PAs into low fragmented lands. If protecting low fragmented lands is accepted as an efficacious strategy to meet EU biodiversity targets our results could be used to formulate pragmatic conservation decisions, while also ensuring high ecological quality of PA additions under climate change.     

Whole picture of human stratum corneum ceramides,including the chain-length diversity of long-chain bases

Ceramides are essential lipids for skin permeability barrier function, and a wide variety of ceramide species exist in the stratum corneum (SC). Although ceramides with long-chain bases (LCBs) of various lengths have been identified in the human SC, a quantitative analysis that distinguishes ceramide species with different LCB chain lengths has not been yet published. Therefore, the whole picture of human SC ceramides remains unclear. Here, we conducted LC/MS/MS analyses to detect individual ceramide species differing in both the LCB and FA chain lengths and quantified 1,327 unbound ceramides and 254 protein-bound ceramides: the largest number of ceramide species reported to date. Ceramides containing an LCB whose chain length was C16–26 were present in the human SC. Of these, C18 (28.6%) was the most abundant, followed by C20 (24.8%) and C22 (12.8%). Each ceramide class had a characteristic distribution of LCB chain lengths and was divided into five groups according to this distribution. There was almost no difference in FA composition between the ceramide species containing LCBs of different chain lengths. Furthermore, we demonstrated that one of the serine palmitoyltransferase (SPT) complexes, SPTLC1/SPTLC3/SPTSSB, was able to produce C16–24 LCBs. The expression levels of all subunits constituting the SPT complexes increased during keratinocyte differentiation, resulting in the observed chain-length diversity of LCBs in the human SC. This study provides a molecular basis for elucidating human SC ceramide diversity and the pathogenesis of skin disorders.     

Novel oxindole compounds inhibit the aggregation of amyloidogenic proteins associated with neurodegenerative diseases

Amyloidogenic proteins form aggregates in cells, thereby leading to neurodegenerative disorders, including Alzheimer's and prion's disease, amyotrophic lateral sclerosis (ALS) in humans, and degenerative myelopathy (DM) and cognitive dysfunction in dogs. Hence, many small-molecule compounds have been screened to examine their inhibitory effects on amyloidogenic protein aggregation. However, no effective drug suitable for transition to clinical use has been found. Here we examined several novel oxindole compounds (GIF compounds) for their inhibitory effects on aggregate formation of the canine mutant superoxide dismutase 1 (cSOD1 E40K), a causative mutation resulting in DM, using Thioflavin-T fluorescence. Most GIF compounds inhibited the aggregation of cSOD1 E40K. Among the compounds, GIF-0854-r and GIF-0890-r were most effective. Their inhibitory effects were also observed in cSOD1 E40K-transfected cells. Additionally, GIF-0890-r effectively inhibited the aggregate formation of human SOD1 G93A, a causative mutation of ALS. GIF-0827-r and GIF-0856-r also effectively inhibited aggregate formation of human prion protein (hPrP). Subsequently, the correlation between their inhibitory effects on cSOD1 and hPrP aggregation was shown, indicating GIF compounds inhibited the aggregate formation of multiple amyloidogenic proteins. Conclusively, the novel oxindole compounds (GIF-0827-r, GIF-0854-r, GIF-0856-r, and GIF-0890-r) are proposed as useful therapeutic candidates for amyloidogenic neurodegenerative disorders.     

Artemisia: a promising plant for the treatment of cancer

Due to the promising features of the ancient herbal plant Artemisia, its biologic activity has been investigated for use in modern medicine. In this regard, Artemisia and its active phytochemicals have been introduced as having antimalarial, antioxidant, cytotoxic, antispasmodic, anthelmintic, neuroprotective, anti-inflammatory, and antimicrobial agents. In the case of cancer treatment, the plant species and its bioactive compounds target multiple pathways. Here we reviewed the scientific literature published up until 2018, which have explained the cytotoxic activity of the Artemisia species and their constituents. This review summarizes the published data found in PubMed, Science Direct and Scopus. Here, studies about the cytotoxicity and antitumor action on cancer cells and tumor bearing animals are discussed. Also, detailed molecular pathways affected by the plant and the phytochemistry of the cytotoxic active components are presented. Among all species and chemical constituents, the active ones have been selected and discussed in detail. The cytotoxic comparison made here may open a window for future works and selection of agents for cancer chemotherapy.     

Functional analysis of thermo-sensitive TRPV1 in an aquatic vertebrate,masu salmon (Oncorhynchus masou ishikawae)

Transient receptor potential vanilloid 1 (TRPV1) is mainly expressed in nociceptive primary sensory neurons and acts as a sensor for heat and capsaicin. The functional properties of TRPV1 have been reported to vary among species and, in some cases, the species difference in its thermal sensitivity is likely to be associated with thermal habitat conditions. To clarify the functional properties and physiological roles of TRPV1 in aquatic vertebrates, we examined the temperature and chemical sensitivities of TRPV1 in masu salmon (Oncorhynchus masou ishikawae, Om) belonging to a family of salmonids that generally prefer cool environments. First, behavioral experiments were conducted using a video tracking system. Application of capsaicin, a TRPV1 agonist, induced locomotor activities in juvenile Om. Increasing the ambient temperature also elicited locomotor activity potentiated by capsaicin. RT-PCR revealed TRPV1 expression in gills as well as spinal cord. Next, electrophysiological analyses of OmTRPV1 were performed using a two-electrode voltage-clamp technique with a Xenopus oocyte expression system. Heat stimulation evoked an inward current in heterologously expressed OmTRPV1. In addition, capsaicin produced current responses in OmTRPV1-expressing oocytes, but higher concentrations were needed for its activation compared to the mammalian orthologues. These results indicate that Om senses environmental stimuli (heat and capsaicin) through the activation of TRPV1, and this channel may play important roles in avoiding environments disadvantageous for survival in aquatic vertebrates.     

Spectroscopic studies for identifying the chemical states of the periostracum of the Corbicula species in Lake Biwa

Corbicula clam shells consist of thin periostracum and calcareous layers made of calcium carbonate (CaCO₃). Depending on habitat conditions, the shell exhibits various colorations, such as yellow, brown, and black. The chemical state of the periostracum of the Corbicula species in Lake Biwa was studied by X-ray absorption fine structure (XAFS) and Raman scattering spectroscopies. Fe K-edge X-ray absorption near edge structure (XANES) revealed that the Fe³⁺ intensity increases as the color of the shell changes from yellow to black. Raman spectra suggested that quinone-based polymers cover the yellow shell, and the black shell is further covered by dihydroxyphenylalanine (DOPA) rings of amino acid derivatives. From Fe K-edge extended X-ray absorption fine structure (EXAFS), it was found that Fe³⁺ in the periostracum was surrounded by five to six oxygen atoms with an average Fe-O ligand distance of 2.0 Å. Accordingly, a tris-DOPA-Fe³⁺ complex is formed, which is responsible for the periostracum’s black color.     

Aphanomyces astaci mtDNA: insights into the pathogen’s differentiation and its genetic diversity from other closely related oomycetes

The causative agent of crayfish plague, Aphanomyces astaci (Saprolegniales, Oomycota), is one of the 100 world’s worst invasive alien species and represents a major threat to freshwater crayfish species worldwide. A better understanding of the biology and epidemiology of A. astaci relies on the application of efficient tools to detect the pathogen and assess its genetic diversity. In this study, we validated the specificity of two recently developed PCR-based approaches used to detect A. astaci groups. The first relies on the analysis of mitochondrial ribosomal rnnS (small) and rnnL (large) subunit sequences and the second, of sequences obtained by using genotype-specific primers designed from A. astaci whole genome sequencing. For this purpose, we tested the specificity against 76 selected isolates, including other oomycete species and the recently described species Aphanomyces fennicus, which, when used in nrITS-based specific tests for A. astaci, is known to result in a false positive. Under both approaches, we were able to efficiently and accurately identify A. astaci and its genetic groups in both pure cultures and clinical samples. We report that sequence analysis of the rnnS region alone is sufficient for the identification of A. astaci and a partial characterization of haplogroups. In contrast, the rnnL region alone is not sufficiently informative for A. astaci identification as other oomycete species present sequences identical to those of A. astaci.     

Morphological traits of wheat (Triticum aestivum L.) associated with resistance to shoot fly,Atherigona approximata Malloch

Shoot flies (Atherigona spp.) are the members of muscidae family which have got economic importance as pest of several crops of Gramineae family mostly cereals and millets. One of the most effective management strategies for controlling shoot fly is the use of resistant wheat cultivars carrying specific resistant traits. Among thirty wheat genotypes screened at the University of Agricultural Sciences, Dharwad-Karnataka (India), two advanced germplasms UAS BW-12417 and UAS BW-11110 recorded least oviposition and dead heart due to shoot fly and found to be less preferred by Atherigona approximata Malloch. The morphological traits of different wheat genotypes revealed a significant negative correlation of shoot fly oviposition and dead heart with leaf length, leaf length to breadth ratio, seedling height, average seedling growth rate, seedling vigour, leaf glossiness and trichome density of wheat leaves, which indicated the enhanced shoot fly infestation as decrease in the values of above-mentioned morphological traits. Meanwhile, increase in leaf breadth and leaf area of wheat genotype aggrandised the oviposition and dead heart damage by shoot fly. Under the changing climate where, the minor insect pests attaining major pest status, the present investigation would pave way for breeders to tailor future breeding programmes to evolve shoot fly resistant hybrids with high yielding traits.     

The N-terminal Proline Hinge Motif Controls the Structure of Bovine Herpesvirus 1-encoded Inhibitor of the Transporter Associated with Antigen Processing Required for its Immunomodulatory Function

Due to unique features, proline residues may control protein structure and function. Here, we investigated the role of ⁵²PPQ⁵⁴ residues, indicated by the recently established experimental 3D structure of bovine herpesvirus 1-encoded UL49.5 protein as forming a characteristic proline hinge motif in its N-terminal domain. UL49.5 acts as a potent inhibitor of the transporter associated with antigen processing (TAP), which alters the antiviral immune response. Mechanisms employed by UL49.5 to affect TAP remain undetermined on a molecular level. We found that mutations in the ⁵²PPQ⁵⁴ region had a vast impact on its immunomodulatory function, increasing cell surface MHC class I expression, TAP levels, and peptide transport efficiency. This inhibitory effect was specific for UL49.5 activity towards TAP but not towards the viral glycoprotein M. To get an insight into the impact of proline hinge modifications on structure and dynamics, we performed all-atom and coarse-grained molecular dynamics studies on the native protein and PPQ mutants. The results demonstrated that the proline hinge sequence with its highly rigid conformation served as an anchor into the membrane. This anchor was responsible for the structural and dynamical behavior of the whole protein, constraining the mobility of the C-terminus, increasing the mobility of the transmembrane region, and controlling the accessibility of the C-terminal residues to the cytoplasmic environment. Those features appear crucial for TAP binding and inhibition. Our findings significantly advance the structural understanding of the UL49.5 protein and its functional regions and support the importance of proline motifs for the protein structure.