Timing of propagule release significantly alters the deposition area of resulting aerial dispersal

Aim The aim of this study is to determine whether changes to the seasonal and circadian timing of propagule release can a have a significant effect on the area covered by resulting aerial dispersal. Location Western Australia. Methods Using the atmospheric pollution model (TAPM), an existing meso‐scale dispersal model, a range of release patterns was simulated and the resulting deposition compared. Comparisons were based on observations of deposition patterns and the calculated area of deposition. Results Small changes to the timing of propagule release were shown to significantly impact on the area experiencing deposition from the resulting aerial dispersal. Main conclusions Simulations performed in this study show that, for small propagules, changes to the timing of release can lead to alternate, clearly differentiable dispersal events. Small changes in both the seasonal and circadian patterns of release can have significant effects on the area that experiences deposition during the resulting dispersal event. This effect is particularly important at the landscape scale and when there is a need to quantify individual dispersal events. Predictive modelling of aerial dispersal needs to be undertaken with an understanding of the manner in which biological and environmental factors that affect the timing of propagule release can influence results. Results presented highlight the need to characterize the epidemiology of pathogenic organisms of importance to biosecurity as much as possible before they arrive.     

Proteomic analysis of striated muscle

The techniques collectively known as proteomics are useful for characterizing the protein phenotype of a particular tissue or cell as well as quantitatively identifying differences in the levels of individual proteins following modulation of a tissue or cell. In the area of striated muscle research, proteomics has been a useful tool for identifying qualitative and quantitative changes in the striated muscle protein phenotype resulting from either disease or physiological modulation. Proteomics is useful for these investigations because many of the changes in the striated muscle phenotype resulting from either disease or changes in physiological state are qualitative and not quantitative changes. For example, modification of striated muscle proteins by phosphorylation and proteolytic cleavage are readily observed using proteomic technologies while these changes would not be identified using genomic technology. In this review, I will discuss the application of proteomic technology to striated muscle research, research designed to identify key protein changes that are either causal for or markers of a striated muscle disease or physiological condition.     

Deconstructing the neuropathic pain phenotype to reveal neural mechanisms

After nerve injury maladaptive changes can occur in injured sensory neurons and along the entire nociceptive pathway within the CNS, which may lead to spontaneous pain or pain hypersensitivity. The resulting neuropathic pain syndromes present as a complex combination of negative and positive symptoms, which vary enormously from individual to individual. This variation depends on a diversity of underlying pathophysiological changes resulting from the convergence of etiological, genotypic, and environmental factors. The pain phenotype can serve therefore, as a window on underlying pathophysiological neural mechanisms and as a guide for developing personalized pain medicine.     

Evolutionary adaptability of biological macromolecules

Summary The degree of gradualism with which tertiary structure and function of protein changes with stepwise changes in primary structure (assumed to be influenced by redundancy of weak bonding) is both a precondition for and consequence of evolution. The resulting selection for degree of gradualism has implications for a number of structural and functional properties of modern proteins as well as for the significance of neutral (so-called non-Darwinian) phenomena in relation to selection.     

Cranial vault modification as a cultural artifact: a comparison of the Eurasian steppes and the Andes.

This paper details the practice of intentional cranial vault modification in the Eurasian steppes as well as in the pre-Columbian Andes focusing on the similarities and differences in how the practice was used to respond to changes in society. The appearance of vault modification in the steppes and the forms seen in the cemeteries of the Syr Darya and Amu Darya River deltas are discussed. Temporal changes in the pattern of modification are also investigated, especially the dramatic homogenization of the custom resulting from the conquests of the Huns. This is contrasted with incidences of cranial modification in the south-central Andes, including the appearance of deliberate head shaping as well as shifts in the practice during the expansion of the Bolivian Altiplano state of Tiwanaku. Similarities in the use of cranial vault modification between these unrelated areas and in the alterations of the practice resulting from foreign contact are considered in light of vault modification's role as a malleable cultural artifact.     

Rearrangement of the endoplasmic reticulum and calcium transient formation: the computational approach

Experiments affecting calcium signaling often lead to changes in the calcium transient height. The present work is designed to approach this effect theoretically. Use of computational model let us to follow results of precisely designed changes in the endoplasmic reticulum distribution as a possible cause of cytoplasmic free calcium ion level. Obtained results suggest that indeed, rearrangement of the endoplasmic reticulum elements may be responsible for modulation of calcium signal's strength. We have also noticed that even if the endoplasmic reticulum concentration levels are local, the resulting changes in free calcium concentration are global and evenly distributed throughout the cell. The used mathematical method proved to be a powerful tool which made us understand the chemical dynamics of nonequilibrium processes of calcium transient formation. Presented data show how Ca2+ signal resulting from IP3 provoked release of calcium from the endoplasmic reticulum may depend on the cytoskeleton structure.     

Domestication Shapes Recombination Patterns in Tomato

Meiotic recombination is a biological process of key importance in breeding, to generate genetic diversity and develop novel or agronomically relevant haplotypes. In crop tomato, recombination is curtailed as manifested by linkage disequilibrium decay over a longer distance and reduced diversity compared with wild relatives. Here, we compared domesticated and wild populations of tomato and found an overall conserved recombination landscape, with local changes in effective recombination rate in specific genomic regions. We also studied the dynamics of recombination hotspots resulting from domestication and found that loss of such hotspots is associated with selective sweeps, most notably in the pericentromeric heterochromatin. We detected footprints of genetic changes and structural variants, among them associated with transposable elements, linked with hotspot divergence during domestication, likely causing fine-scale alterations to recombination patterns and resulting in linkage drag.     

Conformational behavior of ionic self-complementary peptides

Several de novo designed ionic peptides that are able to undergo conformational change under the influence of temperature and pH were studied. These peptides have two distinct surfaces with regular repeats of alternating hydrophilic and hydrophobic side chains. This permits extensive ionic and hydrophobic interactions resulting in the formation of stable beta-sheet assemblies. The other defining characteristic of this type of peptide is a cluster of negatively charged aspartic or glutamic acid residues located toward the N-terminus and positively charged arginine or lysine residues located toward the C-terminus. This arrangement of charge balances the alpha-helical dipole moment (C --> N), resulting in a strong tendency to form stable alpha-helices as well. Therefore, these peptides can form both stable alpha-helices and beta-sheets. They are also able to undergo abrupt structural transformations between these structures induced by temperature and pH changes. The amino acid sequence of these peptides permits both stable beta-sheet and alpha-helix formation, resulting in a balance between these two forms as governed by the environment. Some segments in proteins may also undergo conformational changes in response to environmental changes. Analyzing the plasticity and dynamics of this type of peptide may provide insight into amyloid formation. Since these peptides have dynamic secondary structure, they will serve to refine our general understanding of protein structure.     

A look inside the diabetic brain: Contributors to diabetes-induced brain aging

Central nervous system (CNS) complications resulting from diabetes is a problem that is gaining more acceptance and attention. Recent evidence suggests morphological, electrophysiological and cognitive changes, often observed in the hippocampus, in diabetic individuals. Many of the CNS changes observed in diabetic patients and animal models of diabetes are reminiscent of the changes seen in normal aging. The central commonalities between diabetes-induced and age-related CNS changes have led to the theory of advanced brain aging in diabetic patients. This review summarizes the findings of the literature as they relate to the relationship between diabetes and dementia and discusses some of the potential contributors to diabetes-induced CNS impairments.     

The broken mouse: the role of development, plasticity and environment in the interpretation of phenotypic changes in knockout mice

With the advent of gene knockout technology has arisen the problem of how to interpret the resulting phenotypic changes in mice lacking specific genes. This problem is especially relevant when applied to behavioral phenotypes of knockout mice, which are difficult to interpret. Of particular interest are the roles of development and compensatory changes, as well as other factors, such as the influence of the gene knockout on nearby genes, the effect of the genetic background strain, maternal behavioral influences, and pleiotrophy.     

Possible involvement of the membrane potential in the gravitactic orientation of Euglena gracilis

Euglena gracilis, a unicellular photosynthetic flagellate, uses light and gravity as environmental hints to reach and stay in regions optimal for growth and reproduction. The current model of gravitaxis (the orientation with respect to the earth's gravitational field) is based on the specific density difference between cell body and medium. The resulting sedimentation of the cell body applies a force to the lower membrane. This force activates mechano-sensitive ion channels. The resulting ion flux changes the membrane potential, which in turn triggers reorientational movements of the trailing flagellum. One possibility for recording the predicted membrane potential changes during reorientation is the use of potential-sensitive dyes, such as Oxonol VI. The absorption changes of the dye indicating potential changes were recorded with a custom-made photometer, which allows a high precision measurement with a high temporal resolution. After a gravitactic stimulation, a short period of hyperpolarization was detected, followed by a massive depolarization of the cell. The membrane potential returned to initial values after a period of approximately 200 s. Parallel measurements of the precision of orientation and the membrane potential showed a close relationship between both phenomena. The obtained results support the current model of gravitaxis of Euglena gracilis.     

Changes in the phospholipid composition of mitochondria during heat incubation

Incubation of liver mitochondria at 37 degrees C causes changes in the phospholipid composition, such as the decrease in the levels of major phospholipids (e.g. phosphatidylcholine, phosphatidylethanolamine, cardiolipin) and their lysoderivatives as well as an increase in the levels of phosphatidic and lysophosphatidic acids. Similar changes in the phospholipid composition are observed upon heat incubation of mitochondrial fragments ("ghosts", inner and outer mitochondrial membranes). Ca2+ accelerate the heat-induced changes in the phospholipid levels resulting from heat incubation, whereas EGTA, in contrast, decelerates them. The role of an endogenous system of lipolytic enzymes in the observed conversions of mitochondrial phospholipids is discussed.     

Ribosome accumulation and the regulation of epidermal hyperplastic growth.

Ribosomes accumulate in large numbers during epidermal hyperplastic growth, and their number returns to normal levels during the period of regression when the hyperplastic epidermis returns to its normal size. There is a rough correlation between the degree of epidermal hyperplastic growth and the amount of ribosome accumulation in each epidermal cell. Elevated ribosome levels are also seen in chronic epidermal hyperplasia and in epidermal papillomas. The suggestion is put forward that the marked accumulation of ribosomes in epidermal cells, as well as other as yet unspecified linked molecular changes, produce an imbalance which keeps epidermal cells proliferating resulting in hyperplastic growth. In epidermal tumors this imbalance is locked in place resulting in a permanent epidermal hyperplastic growth condition.     

Hunting for protein markers of hypoxia by combining plasma membrane enrichment with a new approach to membrane protein analysis

Nontransient hypoxia is strongly associated with malignant lesions, resulting in aggressive behavior and resistance to treatment. We present an analysis of mRNA and protein expression changes in neuroblastoma cell lines occurring upon the transition from normoxia to hypoxia. The correlation between mRNA and protein level changes was poor, although some known hypoxia-driven genes and proteins correlated well. We present previously undescribed membrane proteins expressed under hypoxic conditions that are candidates for evaluation as biomarkers.     

Coordination of stomatal,hydraulic, and canopy boundary layer properties: Do stomata balance conductances by measuring transpiration?

A striking coordination is observed in sugarcane between prevailing levels of stomatal opening and the hydraulic capacity of the soil, roots and stem to supply the leaves with water. This coordination of vapor phase and liquid phase conductances is associated with decreases in stomatal conductance on a leaf area basis that compensate for increasing leaf area during canopy development, causing transpiration to approach a maximum value on a per plant or ground area basis rather than increase linearly with leaf area. The resulting balance between water loss and water transport capacity maintains leaf water status remarkably constant over a wide range of plant. sizes and growing conditions. These changes in stomatal conductance during development are determined by changes in the composition of the xylem sap rather than by changes in leaf properties. Changes in boundary layer conductance resulting from non-developmental changes in canopy structure such as loding cause additional changes in stomatal conductance mediated by altered humidity at the leaf surface. These maintain a constant level of total canopy vapor phase conductance (stomatal and boundary layer in series) and a constant level of canopy transpiration. These patterns indicate that stomata exert an active role in regulating transpiration even in dense canopies. This control function is consistent with stomatal metering of transpiration, mediated by fluxes of root-derived materials in the xylem sap.     

Identification of phosphorylation-induced changes in vimentin intermediate filaments by site-directed spin labeling and electron paramagnetic resonance

Phosphorylation drives the disassembly of the vimentin intermediate filament (IF) cytoskeleton at mitosis. Chromatographic analysis has suggested that phosphorylation produces a soluble vimentin tetramer, but little has been determined about the structural changes that are caused by phosphorylation or the structure of the resulting tetramer. In this study, site-directed spin labeling and electron paramagnetic resonance (SDSL-EPR) were used to examine the structural changes resulting from protein kinase A phosphorylation of vimentin IFs in vitro. EPR spectra suggest that the tetrameric species resulting from phosphorylation is the A11 configuration. EPR spectra also establish that the greatest degree of structural change was found in the linker 2 and the C-terminal half of the rod domain, despite the fact that most phosphorylation occurs in the N-terminal head domain. The phosphorylation-induced changes notably affected the proposed "trigger sequences" located in the linker 2 region, which have been hypothesized to mediate the induction of coiled-coil formation. These data are the first to document specific changes in IF structure resulting from a physiologic regulatory mechanism and provide further evidence, also generated by SDSL-EPR, that the linker regions play a key role in IF structure and regulation of assembly/disassembly.     

Phospholipase activity and plasma membrane homeostasis

Cyclic changes in the physiochemical state of the plasma membrane appear to be necessary for the normal functioning of the cell, especially with respect to division and differentiation. Such changes require a flexible membrane lipid composition to permit the necessary sequence of physicochemical changes to occur during these cellular events. This flexibility can be lost as a result of peroxidation-induced cross linking of membrane constituents, which prevents the normal physico-chemical membrane changes from occurring, resulting in abnormal cellular function. It is proposed that phospholipase A2 and C form a mutually regulatory enzyme system playing an important role with respect to the maintenance of membrane composition and flexibility.     

Post-irradiation cytology of cervical cancer patients

The accuracy of cervicovaginal cytology following radiotherapy for cervical cancer is compromised by the anatomical and tissue changes resulting from irradiation. Collection of representative samples may be more difficult, and benign radiation changes, post-irradiation dysplasia, and the frequent occurrence of repair cells and active stromal cells in post-irradiation smears may cause diagnostic problems. Nevertheless, cytology is a valuable tool for the detection of locally recurrent cervical cancer. It is simple and economical to perform at the time of clinical follow-up examination, and may detect occult tumour recurrence. Awareness of the cellular changes resulting from irradiation, and the varied composition of post-irradiation smears may lead to more accurate interpretation of the cytological findings.     

氧化应激相关性疾病中线粒体机制的研究进展

氧化应激是由体内生成的活性氧（reactive oxygen species,ROS）／活性氮（reactivenitro．genspecies,RNS）与抗氧化防御机制之间的平衡被打破引起的,这与许多疾病的发病机理相关,包括神经退行性病变、肿瘤、炎症性疾病等。而线粒体作为细胞代谢的中枢,是其作用的主要靶细胞器,氧化应激引起线粒体内脂质、蛋白质与核酸的损伤,导致线粒体结构和功能的改变,该文就线粒体在上述与氧化应激相关的疾病中改变的研究进展作一综述。     

On the mechanism of aging in soybean seeds

Changes in seeds of soybeans (Glycine max [L.] Merr. var. Wayne) which occur during accelerated aging (41 C, 100% relative humidity) showed subsequent loss of vigor, a decline in early respiratory activity, increased leakage of electrolytes, losses of as much as 10% dry weight from imbibing cotyledons, and a decrease in the swelling response of the imbibing system (seed plus H₂O). Each of these changes with aging is interpreted as resulting from deteriorative changes in membranes.