Genetic evidence for introgression between domestic pigs and wild boars (Sus scrofa) in Belgium and Luxembourg: a comparative approach with multiple marker systems

Hybridization between wild species and their domestic relatives can be an important conservation and management problem. Genetic purity of the wild species is desirable per se and the phenomenon can have unpredictable evolutionary consequences. Declining European wild boar populations were frequently restocked with farmed wild boars that sometimes had been crossed with domestic pigs. We used simple polymerase chain reaction‐based diagnostic tests to detect the presence of mitochondrial DNA and coat colour alleles of domestic origin in wild boars from Belgium, Luxembourg, and western Germany. Microsatellite genotypes were used to test for genetic admixture between the wild boars and domestic pigs. Although almost one‐third of all Luxembourg wild boars carried Asian mitochondrial DNA haplotypes originating from domestic pigs, microsatellite‐based clustering only identified four putatively admixed individuals in Luxembourg. By contrast, clustering identified wild boar × domestic hybrids in most sampling locations in Belgium. We interpret these results as evidence of releases of hybrid captive‐reared wild boars. Our results emphasize the need (if working with classical markers) to use different systems to obtain an understanding as to whether hybridization between wild and domestic relatives might have affected the genetic make‐up of a local population. © 2013 The Linnean Society of London, Biological Journal of the Linnean Society, 2013, 110 , 104–115.     

Auf Exkursion in Südmähren

South Moravia in the south of the Czech Republic is a region of high faunistic diversity. This is due to both, the geologically diverse landscape, e. g. in the area of the cross‐border Thayatal National Park, and the fact that there the Hercynian woodland of Western Europe meets the Pannonian steppe of Southeast Europe. During ten one‐week zoological excursions with biology students of the University of Duisburg‐Essen between 2009 and 2018, a whole string of fascinating animal species of this area could be observed or caught and was subsequently discussed. The main focus was on the avifauna, with many different breeding species like corn bunting, black stork, Eurasian hoopoe, European bee‐eater or kingfisher and great reed warbler. A second emphasis was on the herpetofauna. European green lizard and Aesculapian snake are locally abundant and well observable, European tree frog, fire salamander and European fire‐bellied toad can also be found. One of the most remarkable mammals is the European ground squirrel. Among the invertebrates there are also charismatic species like the spiders Philaeus chrysops and Eresus moravicus or the bush cricket Saga pedo. In this article many species are discussed in the context of their habitats, complemented by a list of all vertebrates successfully determined during the excursions.     

古北和东洋界在我国东部的精确划界--据两栖动物

我国动物地理区划向以横跨古北界和东洋界而著称,但两界在我国东部即秦岭以东地区的精确划界始终没有明确的认识。依据我国东部河南、安徽和江苏省14个动物地理省2目10科17属42种两栖动物的分布资料,通过对物种相似性进行分析后表明,东部的分界呈现为一条过渡带：其北界为自秦岭—伏牛山—淮河—苏北灌溉总渠;其南界为伏牛山—桐柏大别山—淮南丘陵—通扬运河一线。讨论认为更准确的划界要依赖更多的动物类群,并从更大的尺度,进行深刻分析才能获得。     

The status of the Badger Meles meles (L., 1758) (Carnivora, Mustelidae) in Europe

The Eurasian Badger occurs throughout the Palaearctic, and in all states of Europe west of the border with the former Soviet Union. Within this area it is absent only from the arctic zones, high-altitude areas, and some islands. The Badger is currently a protected species in the UK, the Irish Republic, Spain, Portugal, Italy, Belgium, the Netherlands, Albania, Greece, Estonia, Luxembourg and Hungary, but Luxembourg and Hungary are to reconsider protected status. Elsewhere, the species is either considered as small-game or as a pest, hunting being regulated by closed seasons. At present Finland and Burgenland (Austria) afford protection to breeding females, whilst Bulgaria, Macedonia and the Austrian Bundesländer of Steiermark and Salzburg permit Badger hunting throughout the year. Where the species is protected, provisions usually exist for the removal or culling of ‘pest’ individuals. The official European game-bag currently totals about 118,000 Badgers, but poaching is common, particularly in the UK and Ireland. Published population estimates, coupled with national population minima obtained by extrapolation from game-bag statistics, indicate a minimum European Badger population of 1,220,000; the true figure may exceed this considerably. Badger populations appear to be either stable or increasing throughout much of Europe, although no data are currently available for the populations of Greece, Italy, Spain, Croatia, Bosnia-Hercegovina and Portugal. Badgers are uncommon in the Netherlands, Estonia, Belgium, the Slovak Republic, and possibly Poland. Only the populations of Albania and possibly of some parts of the former Yugoslavia appear to be decreasing. The Dutch population remains at considerable risk, despite modest recent increases. The population status of the endemic sub-species of Crete and Rhodes remain uncertain and require urgent clarification. A series of management recommendations are proposed to improve the status of the Badger in Europe.     

Investigating the environmental drivers of deep‐seafloor biodiversity: A case study of peracarid crustacean assemblages in the Northwest Atlantic Ocean

The deep‐sea benthos covers over 90% of seafloor area and hosts a great diversity of species which contribute toward essential ecosystem services. Evidence suggests that deep‐seafloor assemblages are structured predominantly by their physical environment, yet knowledge of assemblage/environment relationships is limited. Here, we utilized a very large dataset of Northwest Atlantic Ocean continental slope peracarid crustacean assemblages as a case study to investigate the environmental drivers of deep‐seafloor macrofaunal biodiversity. We investigated biodiversity from a phylogenetic, functional, and taxonomic perspective, and found that a wide variety of environmental drivers, including food availability, physical disturbance (bottom trawling), current speed, sediment characteristics, topographic heterogeneity, and temperature (in order of relative importance), significantly influenced peracarid biodiversity. We also found deep‐water peracarid assemblages to vary seasonally and interannually. Contrary to prevailing theory on the drivers of deep‐seafloor diversity, we found high topographic heterogeneity (at the hundreds to thousands of meter scale) to negatively influence assemblage diversity, while broadscale sediment characteristics (i.e., percent sand content) were found to influence assemblages more than sediment particle‐size diversity. However, our results support other paradigms of deep‐seafloor biodiversity, including that assemblages may vary inter‐ and intra‐annually, and how assemblages respond to changes in current speed. We found that bottom trawling negatively affects the evenness and diversity of deep‐sea soft‐sediment peracarid assemblages, but that predicted changes in ocean temperature as a result of climate change may not strongly influence continental slope biodiversity over human timescales, although it may alter deep‐sea community biomass. Finally, we emphasize the value of analyzing multiple metrics of biodiversity and call for researchers to consider an expanded definition of biodiversity in future investigations of deep‐ocean life.     

Species–energy relationship in the deep sea: a test using the Quaternary fossil record

Little is known about the processes regulating species richness in deep‐sea communities. Here we take advantage of natural experiments involving climate change to test whether predictions of the species–energy hypothesis hold in the deep sea. In addition, we test for the relationship between temperature and species richness predicted by a recent model based on biochemical kinetics of metabolism. Using the deep‐sea fossil record of benthic foraminifera and statistical meta‐analyses of temperature‐richness and productivity‐richness relationships in 10 deep‐sea cores, we show that temperature but not productivity is a significant predictor of species richness over the past c. 130 000 years. Our results not only show that the temperature‐richness relationship in the deep‐sea is remarkably similar to that found in terrestrial and shallow marine habitats, but also that species richness tracks temperature change over geological time, at least on scales of c. 100 000 years. Thus, predicting biotic response to global climate change in the deep sea would require better understanding of how temperature regulates the occurrences and geographical ranges of species.     

Pleurotomaria DeFrance, 1826 (Gastropoda,Mollusca) from the Lower Bajocian (Middle Jurassic) sediments of Luxembourg,with considerations on its systematics,evolution and palaeobiogeographical history

Abstract: Pleurotomaria species from lower Bajocian (Middle Jurassic) sediments of south‐western Luxembourg housed in the National Natural History Museum of Luxembourg are described. Seven species are recognized, one of which is new, Pleurotomaria faberi sp. nov. A more detailed definition of the diagnostic characters of the genus is proposed and the morphological continuity between Talantodiscus and Pleurotomaria is demonstrated, suggesting that the former cannot be considered as a distinct taxon. The palaeoecology, evolution and palaeobiogeographical history of Pleurotomaria are outlined. Pleurotomaria presumably first appeared in late Middle Triassic of New Zealand where it underwent a relative diversification up to the Hettangian (Early Jurassic). From early Hettangian, most of its evolutionary history took place in Europe and western Tethys. In the European epicontinental seas, Pleurotomaria experienced two important radiations. The first occurred in the Early Jurassic, with a peak in the late Pliensbachian, and was marked by an expansion of the distribution to the central part of western Tethys. After a collapse in species diversity, probably related to the early Toarcian anoxic event, a second radiation occurred. This culminated in the early Bajocian and was mainly confined in a region encompassing southern England, Paris Basin and southern Germany. Low‐spired species, formerly attributed to Talantodiscus, probably originated independently and iteratively during the history of Pleurotomaria. The facies and associated benthic faunas suggest that Pleurotomaria probably lived on shallow soft bottoms composed of mixed calcareous–siliciclastic sediments. The two main Early Jurassic and early Middle Jurassic radiations of the genus took place in these environments. Records of the genus in Jurassic carbonate platform deposits are very few and concern mainly post‐Bajocian species.     

Homogenization of fish assemblages in different lake depth strata at local and regional scales

相似文献   

A New Phaeodarian Species Discovered from the Japan Sea Proper Water,Auloscena pleuroclada sp. nov. (Aulosphaeridae,Phaeosphaerida, Phaeodaria)

A new phaeodarian species, characterized by the presence of long developed side branches recurved proximally and distally on the surface of its radial tube, was described as Auloscena pleuroclada. This new species was only collected from the layers below the 250 m depth in the Sea of Japan. They have never been found in the shallower layers (above 250 m) of this sea or in other investigated areas. The distribution of the present new species is presumably restricted within the deep water of this area, and this species could be a specific phaeodarian adapted to the deep‐sea environment.     

Pouzolzia saxophila sp. nov. (Urticaceae tribe Boehmerieae) from Bahia,Brazil

The paper supplements a taxonomic revision of the New World species of Pouzolzia by Wilmot‐Dear and Friis in 1996 and a supplement in 2011 with an additional new species. Here another new species of Pouzolzia, P. saxophila Friis, Wilmot‐Dear & A. K. Monro, is described from a restricted area of xerophytic scrub vegetation on rocky outcrops in the Boa Nova National Park, Bahia, Brazil. The new species is somewhat similar to P. pringlei, a Mexican endemic, and to P. amambaiensis from the Brazil–Paraguay border, but also to the widespread Asiatic P. zeylanica. However, the similarities with these species are probably due to adaptation to similar dry habitats on rocky outcrops.     

Genomic basis for an informed conservation management of Pelophylax water frogs in Luxembourg

Genetic identification methods have become increasingly important for species that are difficult to identify in the field. A case in point is Pelophylax water frogs. While their morphological determination is highly complex, they include species protected under EU law and some that are classified as invasive. Additionally, genetic data can provide insights into their complex breeding systems, which may or may not involve the reproductive dependency of one species on another. Here, we generate baseline data for water frog monitoring in Luxembourg. We applied a countrywide sampling approach and used SNPs generated by ddRAD sequencing to identify individuals and infer the breeding systems present in the country. We found Pelophylax lessonae and P. kl. esculentus throughout Luxembourg, mostly living in syntopy. In general, a reproductive dependency of P. kl. esculentus on P. lessonae (L‐E system) was revealed. Besides this general system, we detected triploid P. kl. esculentus in six ponds. This indicates a modified L‐E system with reproductive dependency of the triploids on the diploid P. kl. esculentus. The invasive P. cf. bedriagae was detected in three ponds in southern Luxembourg, with evidence for hybridization with native water frogs. In addition to the ddRAD data, we tested a simple genetic method for future monitoring based on the MND1 marker. It showed in almost all cases, an identical species identification as the ddRAD data and was successfully applied to DNA extracts from mouth swabs. Combining this method with our baseline data will enable informed choices for the protection of native water frog species in Luxembourg.     

Vegetation and seed bank in a calcareous grassland restored from a Pinus forest

Question: What is the importance of the seed bank in the maintenance of the restoration potential of a 60‐year‐old abandoned calcareous grassland overgrown by Pinus trees? Location: ‘Les Pairées’, province of Luxembourg, Belgium. Methods: The seed bank and the above‐ground vegetation were surveyed in three adjacent stands, previously forming a unique calcareous grassland: a 60‐year‐old Pinus forest, a four‐year‐old clear‐cutting and a typical calcareous grassland. Floristic diversity was compared among stands and between vegetation and seed bank. Results: The species richness of the vegetation and the seed bank was significantly lower in the Pinus forest. More floristic similarities were found between the clear‐cutting and the calcareous grassland. Seed bank was essentially transient, dominated by annual species. Its correspondence with the above‐ground vegetation was weak. Conclusion: Very few calcareous grassland species have persisted in the Pinus stand. Four years after clear‐cutting, the stand was nearing restoration towards a calcareous grassland. Seed longevity in the soil was not the most explicative factor. Dispersal of propagules from adjacent sources was also important.     

Grid origin affects scaling of species across spatial scales

Aim Distribution maps of species based on a grid are useful for investigating relationships between scale and the number or area of occupied grid cells. A species is scaled up simply by merging occupied grid cells on the observation grid to successively coarser cells. Scale–occupancy relationships (SORs) obtained in this way can be used to extrapolate species down, in other words to compute occupancies at finer scales than the observation scale. In this paper we demonstrate that the SOR is not unique but depends on where one positions the origin of the grid map. Innovation The effect of grid origin on SORs was explored with the aid of the Dutch national data base FLORBASE, which contains the observation records of all 1410 wild vascular plants in the Netherlands on a 1‐km square basis. For each species, we generated 2500 unique SORs by scaling up from 1 km, in steps of 1 km, to squares of 50 km. We computed the sensitivity of the SOR to the grid origin for each species, and subsequently analysed the factors that determined this sensitivity. The effect of grid origin on downscaling was demonstrated by means of a simple power function that we used to extrapolate down from both a 2‐km and a 5‐km grid, to the original 1‐km grid. It appeared that the position of grid origin could have a substantial effect on SORs. The sensitivity of SORs to the position of the grid origin depended on three characteristics of a species’ spatial distribution: rarity, degree of spatial clustering and the position of the distribution relative to the border of the investigated area. Rare species with a clustered distribution near the border were particularly highly sensitive. The dependence of SOR on grid origin caused unpredictable and non‐random errors in downscaled occupancies. Main conclusions In future, the whole bandwidth of scaled occupancies should be considered when testing and interpreting mathematical relationships between scale and occupancy. Moreover, downscaled occupancies should be interpreted cautiously.     

Lichen colonization patterns show minor effects of dispersal distance at landscape scale

The role of dispersal in controlling the distribution of species at landscape scale (10²–10⁴ m) is still a matter of dispute. Here, we use the early colonization pattern of 23 epiphytic lichen species in a former tree‐less heathland landscape (170 km²) to test three hypotheses on how a landscape is colonized: A) mainly by long‐distance dispersal (LDD), B) by rare LDD events followed by limited local dispersal, and C) mainly by limited dispersal, resulting in a colonization front. The study system consisted of a chronosequence of 94 habitat patches constituting 0.4% of the landscape area, with a minimum inter‐site distance of 0.2 km. We used generalized linear mixed models with Bayesian inference to test predictions from the hypotheses. When age of sites and habitat area were accounted for, additional effects of geographical position of sites (distance from old sites, distance‐dependent relative propagule pressure, and distance from border of study area) on the probability of colonization by lichen species were small. Furthermore, species richness of sites did not depend on geographical position, either. Our results support a colonization process mainly governed by LDD at landscape scale, and that local stepwise colonization was not important. We argue that passively dispersed species with numerous small propagules tend to exhibit patchy populations with extensive dispersal at the landscape scale, rather than behaving like classical metapopulations.     

History rather than hybridization determines population structure and adaptation in Populus balsamifera

Hybridization between species is known to greatly affect their genetic diversity and, therefore, their evolution. Also, within species, there may be genetic clusters between which gene flow is limited, which may impact natural selection. However, few studies have looked simultaneously at the influence of among‐species and within‐species gene flow. Here, we study the influence of hybridization between Populus balsamifera and Populus trichocarpa on population structure and adaptation in P. balsamifera. We did this by sampling a total of 1517 individuals from across the ranges of these two species, and by genotyping them using a combination of 93 nuclear and 17 cpDNA SNPs. We found that hybridization is mostly limited to the contact zone where the species’ distributions overlap. Within P. balsamifera, we found multiple levels of population structure. Interestingly, the border between the Eastern and Central clusters is very sharp, whereas the border between the Central and Western clusters is diffuse. Outlier analysis revealed that three loci associated with the sharp border were also associated with climate. We hypothesize that the observed clusters derive from three refugia during the Pleistocene ice ages. Between the Central and Western clusters, post‐glacial long‐distance gene flow has led to the diffusion of their border. In the Eastern cluster, we hypothesize that endogenous genomic barriers have developed, leading to the sharp border and a spurious climate association. We conclude that the large‐scale genetic structure of P. balsamifera is mostly shaped by historical factors and the influence of interspecific hybridization is limited.     

Invertebrate population genetics across Earth's largest habitat: The deep‐sea floor

Despite the deep sea being the largest habitat on Earth, there are just 77 population genetic studies of invertebrates (115 species) inhabiting non‐chemosynthetic ecosystems on the deep‐sea floor (below 200 m depth). We review and synthesize the results of these papers. Studies reveal levels of genetic diversity comparable to shallow‐water species. Generally, populations at similar depths were well connected over 100s–1,000s km, but studies that sampled across depth ranges reveal population structure at much smaller scales (100s–1,000s m) consistent with isolation by adaptation across environmental gradients, or the existence of physical barriers to connectivity with depth. Few studies were ocean‐wide (under 4%), and 48% were Atlantic‐focused. There is strong emphasis on megafauna and commercial species with research into meiofauna, “ecosystem engineers” and other ecologically important species lacking. Only nine papers account for ~50% of the planet's surface (depths below 3,500 m). Just two species were studied below 5,000 m, a quarter of Earth's seafloor. Most studies used single‐locus mitochondrial genes revealing a common pattern of non‐neutrality, consistent with demographic instability or selective sweeps; similar to deep‐sea hydrothermal vent fauna. The absence of a clear difference between vent and non‐vent could signify that demographic instability is common in the deep sea, or that selective sweeps render single‐locus mitochondrial studies demographically uninformative. The number of population genetics studies to date is miniscule in relation to the size of the deep sea. The paucity of studies constrains meta‐analyses where broad inferences about deep‐sea ecology could be made.     

Impact of competition on plant performances along a flooding gradient: a multi‐species experiment

Question: 1. How do the competitive response and the importance of competition vary between species and along a flooding gradient? 2. How does the role of competition in constraining species distribution limits along the gradient vary between lower and upper limits? Location: A 1‐ha meadow within the Alzette floodplain in Luxembourg. Methods: Competitive response and importance of competition were assessed on seven meadow species differing in their tolerance to flooding. Species were cultured in monocultures and in mixtures, in three water treatments reflecting the wet, the middle and the dry end of a natural flooding gradient. We developed two models based on a multiple regression in order to express each component of competition as a function of the neighbour biomass. Results: Five species showed variations in their competitive response across water treatments; however, these species achieved either their highest or their worst competitive response in their optimal water treatment (i.e. the treatment in which the species had the highest biomass in monoculture). Competition was more important for the flood‐tolerant species in the dry treatment than for the flood‐intolerant species in the wet treatment. Conclusions: 1. Variations in species competitive responses along flooding gradients may be the result of either an amplified effect between competition and hydrological stresses, or a hierarchical effect of stress over competition. 2. The role of competition is more important in constraining the upper distribution limits of the flood‐tolerant species than the lower limits of the flood‐intolerant species along flooding gradients.     

The complexity of forest borders determines the understorey vegetation

Questions

What are the most important drivers of plant species richness (gamma‐diversity) and species turnover (beta‐diversity) in the field layer of a forest edge? Does the tree and shrub species richness structure and complexity affect the richness of forest and grassland specialist species?

Location

Southeast Sweden.

Methods

We sampled 50 forest edges with different levels of structural complexity in agricultural landscapes. In each border we recorded trees, shrubs and herb layer species in a 50‐m transect parallel with the forest. We investigated species composition and species turnover in relation to the proportions of gaps in the border and the diversity of trees and shrubs.

Results

Total plant species richness in the field layer was mainly explained by the proportion of gaps to areas with full canopy cover and tree diversity. Increasing number of gaps promoted higher diversity of grassland specialist species within the field layer, resulting in open forest borders with the highest overall species richness. Gaps did however have a negative impact on forest species richness. Conversely, increasing forest species richness was positively related to tree diversity, but the number of grassland specialist species was negatively affected by tree diversity.

Conclusions

Managing forest borders, and therefore increasing the area of semi‐open habitats in fragmented agricultural landscapes, provides future opportunities to create a network of suitable habitats for both grassland and deciduous forest specialist species. Such measures therefore have the potential to increase functional connectivity and support dispersal of species in homogeneous forest/agricultural landscapes.     

Diverse Responses of Planktonic Crustaceans to Fish Predation by Shifts in Depth Selection and Size at Maturity

We investigated the behaviour and life histories of large zooplankton in the Esch-sur-Sûre reservoir (Luxembourg). We found that the decrease in size at maturity, as well as diurnal refuge in deep waters, were the adaptive responses (concurrently or alternatively) adopted by large zooplankters to cope with the increasing predation risk throughout the summer. Daphnia galeata initiated a more severe trade-off to cope with high summer predation relative to other cladoceran species. Diaphanosoma brachyurum and Daphnia cucullata seem less susceptible to fish predation as indicated by the low alteration of their size structure and their vertical distribution. The copepod Eudiaptomus gracilis took refuge in deep waters and achieved important modifications of its mature size.     

Ape behavior in two alternating environments: comparing exhibit and short‐term holding areas

In many facilities, primates are voluntarily transferred between different enclosures on a daily basis to facilitate animal husbandry and exhibit maintenance. This procedure is particularly relevant in the management of great apes living in zoos, where the requirements of functional management must be balanced with the desire to maintain enriching and naturalistic exhibit enclosures that benefit ape residents and attract the visiting public. In these settings, examinations of ape behavior and welfare typically focus exclusively on activity in the primary exhibit area. However, physical, social and sensory experiences unique to each area may shape different patterns of behavior. In the current study, zoo‐living chimpanzees and gorillas were moved each day from exhibit areas to off‐exhibit holding areas for a short duration as a part of regular management procedures. Behavioral data indicated species‐specific reactions to the holding area, including increased aggression and self‐directed behavior by chimpanzees and increased activity and prosocial behavior among gorilla subjects. Both species showed more feeding‐foraging behavior while in the exhibit enclosure. Results suggest that holding areas may not meet all behavior needs of captive great apes and demonstrate the importance of including all components of the captive enclosure in comprehensive analyses of great ape behavior and welfare. Am. J. Primatol. 72:951–959, 2010. © 2010 Wiley‐Liss, Inc.