Taxonomic assessment of sharks,rays and guitarfishes (Chondrichthyes: Elasmobranchii) from south‐eastern Arabia,using the NADH dehydrogenase subunit 2 (NADH2) gene

An 829‐bp fragment of the NADH dehydrogenase subunit 2 (NADH2) gene was used to assess the taxonomic status of 1487 elasmobranch specimens, representing 52 putative species. Strong evidence was found for the existence of an undescribed Echinorhinus species and for cryptic speciation within Rhynchobatus djiddensis. The results also provide strong molecular support for the existence of two previously reported, but undescribed, guitarfish species. Potential, but less conclusive, cryptic lineage diversification was also noted in Carcharhinus leucas, Loxodon macrorhinus, Iago omanensis and Gymnura poecilura. A complex situation was found in the genus Himantura, with potentially three distinct lineages evident, one of which is probably an undescribed species, in the H. gerrardi complex. One dasyatid specimen could not be identified, but appears to be closely related to Dasyatis ushiei, while Himantura leoparda and Carcharhinus longimanus are reported from Oman for the first time. The results of the present study also reinforce previously reported geographical divisions within certain putative species, which has important implications for fishery management and conservation. © 2015 The Linnean Society of London     

Life-history characters and phylogeny are correlated with extinction risk in the Australian angiosperms

Aim To determine whether life‐history characters that affect population persistence (e.g. habit and life span) and those that influence reproductive success (e.g. sexual system and fruit type) are non‐randomly correlated with extinction risk (i.e. threat category) in the Australian flora (c. 19,000 species, of which c. 14% is threatened). To identify patterns that present useful conservation directions. To understand patterns of extinction risk in the Australian flora at a broad scale. Location Continental Australia. Methods A country‐wide exploration of four life‐history characters in the Australian flora (n = 18,822 species) was undertaken using reference texts, expert opinion, herbarium records and field work. For each character and threat‐category combination, a G‐test (using a log‐linear model) was performed to test the null hypothesis that the two factors were independent in their effects on count. A generalized linear model (GLM) with a logit link and binomial error distribution was constructed with the proportion of taxa in each extinction risk category as the response variable and the habit, sex and fruit‐type characters as explanatory terms. In a separate approach, we investigated patterns across the threat categories of non‐endangered extant, endangered, and extinct using a multinomial model. We examined whether or not species‐poor genera were more likely to contain threatened or extinct species than species‐rich genera. A GLM with a binomial error distribution and logit link function was constructed to obtain a weighted regression on the proportion of species listed as extinct or endangered within a genus versus the log of the size of the genus. We also used a supertree analysis and character tracing to investigate the role of phylogeny on extinction risk. Results We found that the Australian flora is primarily composed of bisexual shrubs with dry‐dehiscent fruits. Dioecious breeding systems (separate female and male flowers on separate plants) in many floras are the predominant unisexual system, but in Australia there are unexpectedly high levels of monoecy (separate female and male flowers on the same plant). Within the extinct data set of 31 species we detected a significant departure from that expected for habit but not for life span, sexual system or fruit type. There are significantly fewer trees on the extinct list than expected. This may reflect the greater resilience of trees than of other growth habits to extinction processes as well as the observation time‐frame. Within the endangered data set of 450 species we found significant differences in the representation of the observed characters from that expected within sex systems and fruit types. We show that, depending on the life form, unisexual breeding systems can be significantly and positively associated with endangered species compared with non‐threatened species. For example, there are more monoecious species than expected by chance among the tree species listed as endangered but fewer among the herbaceous life forms. Threat category was found to be non‐randomly clustered in some clades. Main conclusions Life‐history characters in certain combinations are predictive of extinction risk. Phylogeny is also an important component of extinction risk. We suggest that specific life‐history characters could be used for conservation planning and as an early warning sign for detecting vulnerability in lists of species.     

The effect of Peruvian small-scale fisheries on sunfishes (Molidae)

Reports were compiled of sunfish (family Molidae) by-catch in Peruvian small-scale fisheries and sunfish by-catch rates were estimated using data from shore-based and onboard monitoring programmes. A total of 114 sunfishes were reported in the longline and gillnet fisheries along the Peru coast from 2005 to 2017. Systematic monitoring effort of small-scale gillnets leads to an estimate of between 23 and 352 individuals captured annually by the fleet fishing from the northern port of Salaverry and central ports of Ancon and Chorrillos and suggests that the actual number captured by the Peruvian gillnet fleet is in the thousands of individuals. Thus, Peruvian small-scale fisheries have the potential to greatly affect populations of these still poorly studied species. Moreover, new occurrence locations are reported for the newly described Mola tecta, which was only observed south of 11° S. Because of physical similarities among Mola species it was difficult to identify sunfishes to the species level and thus further studies (e.g., genetics) will be required to provide more detailed information on individual species vulnerability to by-catch in Peruvian waters.     

Life-history and sex allocation in Trypoxylon (syn. Trypargilum) lactitarse (Hymenoptera; Crabronidae)

Hymenopterans have become a model for the study of factors that govern sex allocation. In 1983, Seger proposed a model to study Sphecidae wasps with a strong prediction that sex ratio for univoltine wasps should be 1 : 1 (female : male), and for partially bivoltine species it should be male-biased. The present study investigates if Trypoxylon lactitarse (Saussure, 1867) is a univoltine or a bivoltine species and if Seger's model prediction fits the pattern of sex ratio found in this species. The study was carried out at Parque Municipal das Araucárias, in the municipality of Guarapuava, state of Paraná, southern Brazil, from December 2001 to December 2004. Nests of T. lactitarse were obtained using trap-nests drilled longitudinally to a depth to 80 mm with 7.0, 10.0 and 13.0 mm opening diameter. They were placed in a very heterogeneous site filled with araucaria forests, swamps and grasslands. Trypoxylon lactitarse showed two alternative life histories: either they pupated immediately and emerged as adults later in the same season (direct development), or they entered diapause, overwintering and pupating the following spring (delayed development). Its annual sex ratios were not significantly different from 1 : 1, and both sex ratio of overwintering and sex ratio of direct-developing wasps were also not significantly different from 1 : 1, in all years of this study. By examining these results, it was possible to conclude that although T. lactitarse is a multivoltine species, with four generations per year and two alternative life histories, its sex ratio did not support Seger's model.     

Life-history studies versus genetic markers – the case of Hylochares cruentatus (Coleoptera, Eucnemidae)

Recent findings in the greater Helsinki region of Hylochares cruentatus (Coleoptera, Eucnemidae), previously considered locally extinct, have shown ecological and morphological differentiation from H. cruentatus found in Russian Karelia. Despite their identical genetic constitution, differences in adult morphology, male genitalia as well as greatly differing life-history traits between the Finnish and Russian beetles prompted recognizing the Russian Hylochares as a distinct, new species: Hylochares populi n.sp., type locality Russia, Karelia, Kuganavalok. Single old specimens from Estonia and the Altai Mountains belong to the same taxon. Traditional morphological characters and life-history traits separate the two taxa, whereas the four applied genetic markers were identical, suggesting very recent diversification. The Russian H. populi lives in large soft-wooded aspen trees; H. cruentatus prefers tree- and bush-sized willows with harder wood. Conservation actions have to change focus from aspen trees to willow habitats to secure the survival of this rare beetle species in Finland.     

Life-history differentiation and the maintenance of monoecy and dioecy in Sagittaria latifolia (Alismataceae)

The existence of monoecious and dioecious populations within plant species is rare. This limits opportunities to investigate the ecological mechanisms responsible for the evolution and maintenance of these contrasting sexual systems. In Sagittaria latifolia, an aquatic flowering plant, monoecious and dioecious populations exist in close geographic proximity but occupy distinct wetland habitats differing in the relative importance of disturbance and competition, respectively. Life-history theory predicts contrasting evolutionary responses to these environmental conditions. We propose that the maintenance of monoecy and dioecy in S. latifolia is governed by ecological selection of divergent life-history strategies in contrasting habitats. Here we evaluate this hypothesis by comparing components of growth and reproduction between monoecious and dioecious populations under four conditions: natural populations, a uniform glasshouse environment, a common garden in which monoecious and dioecious populations and their F1 progeny were compared, and a transplant experiment using shaded and unshaded plots in a freshwater marsh. Plants from dioecious populations were larger in size and produced heavier corms in comparison with monoecious populations. Monoecious populations flowered earlier and produced more flowers, clonal ramets, and corms than dioecious populations. The life-history differences between the sexual systems were shown to have a quantitative genetic basis, with F1 progeny generally exhibiting intermediate trait values. Survival was highest for each sexual system in field plots that most closely resembled the habitats in which monoecious (unshaded) and dioecious (shaded) populations grow. These results demonstrate that monoecious and dioecious populations exhibit contrasting patterns of investment in traits involved with growth and reproduction. Selection for divergent life histories between monoecious and dioecious populations of S. latifolia appears to be the principal mechanism maintaining the integrity of the two sexual systems in areas of geographic overlap.     

The importance of habitat and life history to extinction risk in sharks, skates, rays and chimaeras

We compared life-history traits and extinction risk of chondrichthyans (sharks, rays and chimaeras), a group of high conservation concern, from the three major marine habitats (continental shelves, open ocean and deep sea), controlling for phylogenetic correlation. Deep-water chondrichthyans had a higher age at maturity and longevity, and a lower growth completion rate than shallow-water species. The average fishing mortality needed to drive a deep-water chondrichthyan species to extinction (Fextinct) was 38-58% of that estimated for oceanic and continental shelf species, respectively. Mean values of Fextinct were 0.149, 0.250 and 0.368 for deep-water, oceanic and continental shelf species, respectively. Reproductive mode was an important determinant of extinction risk, while body size had a weak effect on extinction risk. As extinction risk was highly correlated with phylogeny, the loss of species will be accompanied by a loss of phylogenetic diversity. Conservation priority should not be restricted to large species, as is usually suggested, since many small species, like those inhabiting the deep ocean, are also highly vulnerable to extinction. Fishing mortality of deep-water chondrichthyans already exploited should be minimized, and new deep-water fisheries affecting chondrichthyans should be prevented.     

Abundance of thraustochytrids and bacteria in the equatorial Indian Ocean, in relation to transparent exopolymeric particles (TEPs)

Thraustochytrid protists are often abundant in coastal waters. However, their population dynamics and substrate preferences in the oceanic water column are poorly understood. We studied the abundance and distribution of thraustochytrids, bacteria and TEPs in the equatorial Indian Ocean waters during September 2003, October 2004 and September 2006. Thraustochytrids and bacteria were abundant, suggesting high biological productivity of the region. Thraustochytrids were positively related to bacteria during October 2004 but not at other times, suggesting overlapping or varying substrate preferences at different times. Thraustochytrid and bacteria were positively related to TEPs only in a few stations during October 2004, but were mostly positively related to TEPs generated from in situ water in a roller table experiment. TEPs from natural samples during October 2004 had a much greater affinity to the lectin Concanavalin A than to Limulin compared with those in September 2006 and from the roller tank experiments. The chemical composition of TEPs might explain their relationship with thraustochytrids. Thraustochytrids averaged a higher biomass than bacteria in two of the three cruises, but were less frequent and more patchily distributed compared with bacteria.     

Medusoid release and spawning of Macrorynchia philippina Kirchenpauer, 1872 (Cnidaria,Hydrozoa,Aglaopheniidae)

The life cycle of the aglaopheniid Macrorynchia philippina Kirchenpauer, 1872, is re-described from examination of live specimens collected from Réunion Island, Indian Ocean. Fertile colonies were collected on the outer slope of the coral reef and medusoid release happened a few hours later. Video sequences were recorded. Colonies were hermaphroditic: each phylactocarp contained one female and one male gonotheca. Sexual dimorphism was remarkable: sex could be recognized by colour, the female being red ochre, including about 40 oocytes disposed in a mosaic feature, and the male yellow ochre, having a homogeneous mass of spermatozoa. The blastostyle ran all around the gonangium near the closure of the two valves of the gonotheca, forming gubernacula. A ring of refringent corpuscles was clearly visible near the apex. Medusoids were indistinguishable inside the gonotheca. Male and female medusoids were released simultaneously at gamete maturity. Medusoid release involved the basal rupture of the blastostyle and the rupture of the links between the ectoderm surrounded the medusoid (the mantle), including the blastostyle (the mantle), and the gonothecal perisarc. While the two valves of the gonotheca were pushed and drew aside, the medusoid emerged by slipping out of the mantle that ruptured distally, forming a sheath; the bell of the medusoid did not contract. Immediately after emergence, quick and strong contractions of the bell allowed the medusoid to swim and induced spawning by breaking the ectoderm surrounding the gametic mass around the spadix. Spawning lasted only a few minutes: both oocytes and spermatozoa were expelled at each contraction. Spent medusoids remained alive only about 2 h. External fertilization gave rise to planulae 1 day later.     

Redescription of Chlorophthalmus corniger,a senior synonym of Chlorophthalmus bicornis (Family: Chlorophthalmidae)

Chlorophthalmus corniger is redescribed on the basis of recently collected specimens. The species is redefined as a species of Chlorophthalmus with the lower jaw terminating in a distinctly projecting horizontal plate with strong, spine‐like processes directed forward from the plate's corners; body silvery grey, with numerous minute black spots and traces of broad darker crossbars; base of anterior dorsal fin spines and distal parts of dorsal fins black; adipose fin tiny with numerous black spots; caudal fin black; 3·5 scales above lateral line; three rows of cheek scales; head very large, 34·3–40·1% standard length (L_S); eye large, 29·8–40·8% head length (L_H); pectoral fin long, extending to beyond dorsal fin base, 21·7–26·2% L_S. Chlorophthalmus bicornis is a junior synonym of C. corniger based on the examination of the type series of both species. It is confined to the northern half of the Indian Ocean, reliably recorded from Somalia and the Gulf of Aden to southern Java, Indonesia, at depths between 200 and 500 m. A lectotype and three paralectotypes were designated for C. corniger. DNA barcodes for Indian species of Chlorophthalmus were generated.     

A new species of the genus Cirrhimuraena (Anguilliformes: Ophichthidae) from the Bay of Bengal,India

A new species of the genus Cirrhimuraena (Anguilliformes: Ophichthidae), Cirrhimuraena indica sp. nov., is described based on eight specimens collected from the Paradip (Odisha) and Petuaghat harbours (West Bengal) along the Bay of Bengal. The species is distinct in having the upper jaw fringed with 16–17 cirri before posterior nostril and 4–5 in between the anterior and posterior nostrils on the side; dorsal fin originates above the level of gill opening, predorsal length is 9.3–10.9 in total length; the head is relatively large, the length is 9.3–9.8 in total length; no infraorbital pores are observed between the nostrils; teeth are numerous, small, conical and in bands on each jaw; pores are present before the gill opening 10–11 and before anus 47–48; pectoral-fin length is 2.4–2.8 in head length; predorsal vertebrae are 8–10, pre-anal vertebrae 43–47 and total vertebrae 164–169. In the maximum likelihood tree analysis for COI gene, the new species belongs to the same clade as the other congener of Cirrhimuraena chinensis and is separated from the species morphologically and genetically.     

Latitudinal range of epiplanktonic chaetognatha and ostracoda in the western tropical Indian Ocean

An account of the chaetognath and ostracod species obtained from zooplankton samples collected along a transect in the Western Indian Ocean between 9° N–20° S and 57° 18–68° 43E in January–February 1981 is given. Species richness was maximum north of 10° S. The latitudinal variation of thirteen species of chaetognaths indicated that many of the typical Indo-Pacific species are restricted to the tropical zone with limited penetration into the subtropical region. All the sixteen species of planktonic ostracods were cosmopolitan. Based on the available information on the distribution of chaetognaths and ostracods, the species assemblages in the Indian Ocean are discussed.     

Covariation in Insular Life-history Traits of the Rice Frog(Fejervarya limnocharis)in Eastern China

Although shifts in life-history traits of insular vertebrates, as compared with mainland populations, have been observed in many taxa, few studies have examined the relationships among individual life-history traits on islands. Lifehistory theory also predicts that there is a trade-off between body size and reproductive effort, and between egg size and clutch size. We surveyed the rice frog, Fejervarya limnocharis, on 20 islands within the Zhoushan Archipelago and two nearby sites on the mainland of China to compare differences in life-history traits and to explore relationships among those traits. Rice frog females reached a greater body size on half of the smaller islands among the total 20 surveyed islands, and larger egg size, decreased clutch size and reduced reproductive effort on most of the islands when compared to the two mainland sites. Insular body size was negatively correlated with reproductive effort. There was a negative correlation between egg size and clutch size. Results suggest that life-history theory provides a good explanation for co-variation between body size and reproductive effort, and between egg size and clutch size in rice frogs on the islands.     

Gametogenesis, spawning and fecundity of Platygyra daedalea (Scleractinia) on equatorial reefs in Kenya

The reproductive ecology of the hermaphroditic broadcast spawning scleractinian reef coral Platygyra daedalea was studied on lagoonal reefs in Kenya. While single annual gametogenic cycles occurred in 84% of colonies, biannual gametogenic cycles were recorded in 16% of colonies and these patterns occurred in two morphotypes. In colonies with a single annual cycle, oogenesis occurred for 6–7 months from September to March and spermatogenesis for 5 months from November to March. In biannually spawning colonies, oogenic cycles overlapped for at least 2 months prior to gamete release. The major spawning period occurred in February and March, with minor spawning also occurring in August–October in biannually spawning colonies. Reproductive effort was lower during the minor winter compared to the major summer spawning, with fewer colonies reproducing (12.5–19.2%), not all mesenteries producing oocytes (32.5%) and less than half of the mesenteries with mature oocytes had associated spermaries (48.1%).     

Isotopic enrichment in Rhizoprionodon porosus (Poey, 1861) and Carcharhinus porosus (Ranzani, 1840) embryos

Isotopic values of two Caribbean sharpnose shark Rhizoprionodon porosus litters (Poey, 1861) with two and three embryos and one litter of 11 smalltail shark Carcharhinus porosus embryos showed enriched ¹⁵N and ¹³C compared to their mothers. In R. porosus, embryonic isotope values were 3.06 ± 0.07‰ and 0.69 ± 0.15‰ greater than their mothers' for δ¹⁵N and δ¹³C, respectively, whereas in C. porosus, δ¹⁵N and δ¹³C were 1.79 ± 0.09‰ and 1.31 ± 0.17‰ greater in embryos than their mothers.     

热带印度洋黄鳍金枪鱼渔场时空分布与温跃层的关系

根据Argo浮标剖面温度数据重构热带印度洋各月月平均温跃层特征参数,并结合印度洋金枪鱼委员会(IOTC)黄鳍金枪鱼延绳钓数据,绘制了月平均温跃层特征参数和月平均CPUE的空间叠加图,用于分析热带印度洋黄鳍金枪鱼渔场时空分布和温跃层特征参数的关系。结果表明:热带印度洋温跃层上界深度、温度和下界深度,以及黄鳍金枪鱼中心渔场分布都具有明显的季节性变化特征,黄鳍金枪鱼中心渔场分布和温跃层季节性变化有关。在东北季风期间,高值CPUE渔区的温跃层上界深度的范围为30-40m,超过70m的渔区CPUE值普遍偏低;在西南季风期间温跃层上界最深达到120m。在东北季风期间,高值CPUE渔区温跃层下界深度不超过200m,在西南季风期间,深度会超过300m。在东北季风期间,高值CPUE渔区对应的温跃层上界温度都超过25℃,温度小于24℃的渔区CPUE值普遍较低;在西南季风期间,高值CUPE区域对应的温跃层上界温度范围变大,温跃层上界温度延伸到22℃,在22℃以下渔区CPUE值都很低。采用频次分析和经验累积分布函数计算其最适温跃层特征参数分布,得出黄鳍金枪鱼最适的温跃层上、下界温度范围分别是25-29℃和13-16℃;其上、下界深度范围分别为30-70m和140-200m。K-S检验结果表明,上述结论可靠。     

Immigration, species radiation and extinction in a highly diverse songbird lineage: white-eyes on Indian Ocean islands

Molecular phylogenetic hypotheses of species-rich lineages in regions where geological history can be reliably inferred may provide insights into the scale of processes driving diversification. Here we sample all extant or recently extinct white-eye (Zosterops) taxa of the southwest Indian Ocean, combined with samples from all principal continental lineages. Results support a high dispersal capability, with at least two independent continental sources for white-eyes of the region. An early (within 1.8 million years ago) expansion into the Indian Ocean may have originated either from Asia or Africa; the three resulting lineages show a disparate distribution consistent with considerable extinction following their arrival. Africa is supported as the origin of a later expansion into the region (within 1.2 million years ago). On two islands, a pair of Zosterops species derived from independent immigrations into the Indian Ocean co-occur or may have formerly co-occurred, providing strong support for their origin by double-island colonization rather than within-island (sympatric or microallopatric) speciation. On Mauritius and La Réunion, phylogenetic placement of sympatric white-eyes allow us to rule out a scenario in which independent within-island speciation occurred on both islands; one of the species pairs must have arisen by double colonization, while the other pair is likely to have arisen by the same mechanism. Long-distance immigration therefore appears to be responsible for much of the region's white-eye diversity. Independent immigrations into the region have resulted in lineages with mutually exclusive distributions and it seems likely that competition with congeneric species, rather than arrival frequency, may limit present-day diversity.