青枯菌致病性与基因组之间的关系

青枯菌是引起植物毁灭性青枯病的病原菌。青枯菌基因组约5.8Mb,具有高(G C)含量和约5120个可能的编码基因。该菌基因组由3.7Mb的染色体和2.1Mb的大质粒所组成,其独特的基因组构成与Ⅲ型分泌系统等主要的致病因子密切相关。综述了青枯菌的致病性与其基因组之间关系的新近研究进展。     

茄科雷尔氏菌脂酰-CoA合成酶的功能鉴定

【目的】茄科雷尔氏菌是一种常见的农作物致病菌,引起植物青枯病。研究其脂肪酸代谢途径将有助于寻找新的抗菌药物靶点,为防治青枯病害提供新的思路。【方法】利用大肠杆菌FadD序列,进行同源比对发现茄科雷尔氏菌GMI1000中RSc2857(RsFadD)具有较高的相似性,推测其具有脂酰-CoA合成酶活性。采用PCR扩增方法获得RsfadD基因,连入表达载体pBAD24M后互补大肠杆菌fadD突变株,并检测转化子的生长情况。RsfadD与pET-28b连接后,在大肠杆菌BL(DE3)中表达,并利用Ni-NTA纯化获得带有组氨酸标签的RsFadD,体外测定RsFadD的活性。利用同源重组方法,获得RsfadD敲除突变株,分析突变株的生长性状。【结果】RsfadD异体互补大肠杆菌fadD突变株,恢复突变株在以脂肪酸为碳源的基础培养基上生长。体外活性测定RsFadD具有脂酰-CoA合成酶活性,对不同链长的脂肪酸都具有活性,但活性低于大肠杆菌FadD。RsfadD突变株在添加不同链长脂肪酸的基础培养上仅能微弱生长,而在丰富培养基上生长无差异。【结论】茄科雷尔氏菌中RsfadD编码脂酰-CoA合成酶,在脂肪酸利用过程中发挥重要作用。但RsfadD突变株在基础培养基上微弱生长,说明茄科雷尔氏菌基因组中还有其他的脂酰-CoA合成酶基因。以上研究结果为进一步研究茄科雷尔氏菌中脂酰-CoA合成酶以及脂肪酸利用机制奠定了基础。     

青枯菌特异性噬菌体的研究进展与应用

烟草等茄科植物青枯病的防治是一个世界性难题,传统的化学防治、合理轮作、抗病品种等措施无法有效控制该病的发生。噬菌体用于细菌性病害的防治已有很长历史,近年来利用噬菌体防治青枯菌引发的青枯病方面的研究越来越受重视。我们简要综述了青枯菌噬菌体的研究进展,并对青枯菌噬菌体生物防治的应用前景进行了展望。     

茄科雷尔氏菌的蛋白分泌系统及其特征

茄科雷尔氏菌利用自身的分泌系统能向胞外分泌上百种蛋白, 其中Ⅱ型和Ⅲ型分泌系统通过不同机制将分泌蛋白靶定到胞外或宿主细胞, 是决定茄科雷尔氏菌对宿主产生致病性的主要因素。其中Ⅲ型分泌系统不依赖Sec信号转导系统但必须依赖于宿主细胞的识别激活, 并在病原菌对宿主细胞的特异性识别和细菌在宿主细胞的生长增殖中发挥功能。到目前为止, 已经从茄科雷尔氏菌的GMI1000株系中鉴定出两类在宿主细胞中存在靶标, 并由Ⅲ型分泌系统分泌的效应蛋白Pop2和Gala蛋白家族。主要就茄科雷尔氏菌Ⅲ型分泌系统的基本特征以及效应蛋白及其宿主靶标的相互作用进行综述。     

A CysB regulator positively regulates cysteine synthesis,expression of type III secretion system genes,and pathogenicity in Ralstonia solanacearum

A syringe-like type III secretion system (T3SS) plays essential roles in the pathogenicity of Ralstonia solanacearum, which is a causal agent of bacterial wilt disease on many plant species worldwide. Here, we characterized functional roles of a CysB regulator (RSc2427) in R. solanacearum OE1-1 that was demonstrated to be responsible for cysteine synthesis, expression of the T3SS genes, and pathogenicity of R. solanacearum. The cysB mutants were cysteine auxotrophs that failed to grow in minimal medium but grew slightly in host plants. Supplementary cysteine substantially restored the impaired growth of cysB mutants both in minimal medium and inside host plants. Genes of cysU and cysI regulons have been annotated to function for R. solanacearum cysteine synthesis; CysB positively regulated expression of these genes. Moreover, CysB positively regulated expression of the T3SS genes both in vitro and in planta through the PrhG to HrpB pathway, whilst impaired expression of the T3SS genes in cysB mutants was independent of growth deficiency under nutrient-limited conditions. CysB was also demonstrated to be required for exopolysaccharide production and swimming motility, which contribute jointly to the host colonization and infection process of R. solanacearum. Thus, CysB was identified here as a novel regulator on the T3SS expression in R. solanacearum. These results provide novel insights into understanding of various biological functions of CysB regulators and complex regulatory networks on the T3SS in R. solanacearum.     

Measurement of Horizontal and Vertical Movement of Ralstonia solanacearum in Soil

Two model systems were constructed to measure horizontal and vertical movement of bacteria in soil. These systems were applied to measuring movement of Ralstonia solanacearum (race 1, biovar 3), a causal agent of bacterial wilt of tomato, in andosol and sand at 28°C. The first system was used to measure horizontal movement of the bacteria in soil packed in a narrow horizontal frame. Suspension of the pathogen was applied to soil at one end of the frame, and bacterial number per gram of soil was measured over distance from the inoculation point after 4 days. Horizontal movement of R. solanacearum in supersaturated soil, but without flow, was possibly due to diffusion and the front advanced at 2.2 cm/day in andosol, and at 8.1 cm/day in sand. Using the same experimental system, but applying water inflow to one end of the frame only, the bacterium was detected at the front of water in andosol and sand. The front of the distribution advanced at 20.4 cm/h in andosol and 66.3 cm/h in sand. In the second experimental system, a cylinder of soil packed in a short tube was soaked with water, and soil at the top of the tube was inoculated with bacterial suspension. Immediately, soil cylinders were turned upward, and the bacterial number per gram of soil was measured along vertical distance from the inoculation point after 7 days. Using the system with andosol, the capillary water front rose to 32.5 cm over 7 days after inoculation, and R. solanacearum reached to 18.8 cm height. In sand, capillary water rose to 20.0 cm and the bacteria reached to 16.3 cm height.     

Random Genome Sequencing of Ralstonia solanacearum Strain IVIA 1602 and Comparative Analysis with Strain GMI1000

Ralstonia solanacearum is a β‐proteobacterium which affects several hundred plant species and provokes important agronomic losses. Five biovars of this bacterium have been described and they show behavioural differences. In this study a random sequencing of the genome of R. solanacearum strain IVIA 1602 (race 3, biovar 2), isolated from potato, was performed. The resulting 730 Genomic Survey Sequences (GSSs), representing 6.38% of the complete genome, were compared against the completely sequenced genome of strain GMI1000 (race 1, biovar 3), isolated from tomato, which is the only strain of this species sequenced until now. This comparative analysis showed, as expected, a high degree of similarity, but it also revealed strain‐specific regions of the genome as well as a number of insertion/deletion events and chromosomal rearrangements. All together, this comparative analysis gives an overview of the genomic divergence between these two biovars of the R. solanacearum species complex.     

Specific and sensitive detection of Ralstonia solanacearum in soil with quantitative, real-time PCR assays

Aims:  The aim of this study was to develop a sensitive and an effective method suitable for large-scale detection and quantification of Ralstonia solanacearum in soil.
Methods and Results:  Based on the specific sequence of R. solanacearum strain G1000, the primer pair R.sol1-R.sol2 and the TaqMan probe Rs-pro were designed, and specific and sensitive PCR detection methods were successfully established. The detection limit was 100 fg μl⁻¹ DNA in conventional PCR and 1·2 fg μl⁻¹ in real-time PCR. By combining real-time PCR with the modified protocols to extract DNA from soil, it was possible to achieve real-time detection of R. solanacearum in soil, and the degree of sensitivity was 100 fg μl⁻¹. To detect inhibition in soil samples, an exogenous internal positive control (IPC) was included preventing false negative results, and IPC was successfully amplified from all samples tested. The methodology developed was used to detect the presence of R. solanacearum in tobacco fields in China.
Conclusions:  The real-time PCR combined with the protocol to extract DNA from soil led to the development of a specific, sensitive and rapid detection method for R. solanacearum in soil.
Significance and Impact of the Study:  The real-time PCR improves the detection sensitivity and specificity and provides an important tool for routine detection of R. solanacearum in soil samples and for epidemiological and ecological studies.     

Tn-seq identifies Ralstonia solanacearum genes required for tolerance of plant immunity induced by exogenous salicylic acid

Ralstonia solanacearum, the causal agent of the devastating bacterial wilt disease, is of particular interest to the scientific community. The repertoire of type III effectors plays an important role in the evasion of plant immunity, but tolerance to plant immunity is also crucial for the survival and virulence of R. solanacearum. Nevertheless, a systematic study of R. solanacearum tolerance to plant immunity is lacking. In this study, we used exogenous salicylic acid (SA) to improve the immunity of tomato plants, followed by transposon insertion sequencing (Tn-seq) analysis and the identification of R. solanacearum genes associated with tolerance to plant immunity. Target gene deletion revealed that the lipopolysaccharide (LPS) production genes RS_RS02830, RS_RS03460, and RS_RS03465 are essential for R. solanacearum tolerance to plant immunity, and their expression is induced by plant immunity, thereby expanding our knowledge of the pathogenic function of R. solanacearum LPS. SA treatment increased the relative abundance of transposon insertion mutants of four genes, including two genes with unknown function, RS_RS11975 and RS_RS07760. Further verification revealed that deletion of RS_RS11975 or RS_RS07760 resulted in reduced in vivo competitive indexes but increased tolerance to plant immunity induced by SA treatment, suggesting that these two genes contribute to the trade-off between tolerance to plant immunity and fitness cost. In conclusion, this work identified and validated R. solanacearum genes required for tolerance to plant immunity and provided essential information for a more complete view of the interaction between R. solanacearum and the host plant.     

麻楝果实化学成分及其抗烟草青枯病菌活性的研究

为研究麻楝(Chukrasia tabularis)的化学成分,采用色谱法从麻楝果实乙醇提取物中分离得到15个化合物,利用波谱学方法鉴定其结构分别为:没食子酸甲酯(1)、没食子酸乙酯(2)、没食子酸(3)、ozoroalide(4)、stigmast-4-en-6β-ol-3-one(5)、黄柏呈(6)、chukranin A(7)、chisopanin M(8)、21α,24α-methylmelianodiol(9)、toonaciliatin K(10)、21α,25-dimethylmelianodiol(11)、odoratone(12)、bourjotinolone A(13)、hispidone(14)和phragmalin di-isobutyrate(15)。化合物4~14为首次从麻楝属植物中分离得到。采用滤纸片琼脂扩散法对单体化合物进行抗烟草青枯病菌(Ralstonia solanacearum)的活性研究,结果表明化合物1、2和3具有中等拮抗活性。     

粤、闽、贵烟草青枯病菌分离株及其致病力

【目的】从粤、闽、贵3地烟草青枯病株中分离青枯病菌,测定其致病力并探讨判断致病力的方法。【方法】采用氯化三苯基四氮唑(简称TTC)培养基和蛋白质电泳相结合对青枯病菌致病力进行测定,并分析菌株生化型。【结果】已分离出烟草青枯病菌59株,依据致病力进行划分,无致病力菌株5株,有致病力菌株54株。不同致病力菌株蛋白电泳特定条带存在差异。粤、闽、贵3地烟草青枯病菌有致病力菌株均占主导地位,广东有致病力菌株比例略大,福建次之,贵州最小。按生化型划分,59株青枯病菌中1株属于生化型Ⅳ外,其他58株属于生化型Ⅲ或其亚型生化型Ⅲ-1。【结论】烟草青枯病菌致病力存在差异,SDS-PAGE蛋白指纹中的特定条带可作为判定青枯病菌有无致病力的依据。     

广藿香内生真菌多样性及其对青枯菌的拮抗活性

【目的】对广藿香各部位内生真菌的类群结构及多样性进行系统分析,筛选出对青枯菌具拮抗活性的菌株。【方法】采用组织块分离法从广藿香健康植株的根、茎、叶中分离内生真菌,结合形态学和基于ITS-r DNA序列分析鉴定方法分析广藿香内生真菌的类群结构及多样性,并利用双层平板拮抗法筛选对青枯菌具有抑制活性的菌株。【结果】从广藿香中共分离获得313株内生真菌,隶属于30个属,其中链格孢属(占28.75%)、拟茎点霉属(占23.00%)和炭疽菌属(11.82%)为优势类群,此外还分离到炭皮菌属、弯孢聚壳属、Gibellulopsis、新萨托菌属、葡萄座腔菌属、篮状菌属等较为少见的类群。茎、叶内生真菌的定殖率和分离率明显高于根,而根部多样性指数为2.64,要高于茎(2.00)和叶(1.97);广藿香茎与叶、根与茎、根与叶之间的内生真菌相似性指数分别为0.35、0.20、0.19,均小于0.5,显示各部位之间的内生真菌组成不相似程度高。从313株广藿香内生真菌中通过拮抗实验筛选到16株对青枯菌有拮抗活性的菌株,其中GHXR07、GHXR27和GHXR29的拮抗活性尤为显著,分别被鉴定为Talaromyces sp.、Myrothecium roridum Tode和Talaromyces wortmannii(Kl?cker)Benjamin。【结论】广藿香内生真菌具有丰富的物种多样性且其类群分布具有一定的组织特异性,其中部分菌株对青枯菌具有明显的拮抗活性。     

The population genetic test Tajima's D identifies genes encoding pathogen‐associated molecular patterns and other virulence‐related genes in Ralstonia solanacearum

The detection of pathogen‐associated molecular patterns (PAMPs) by plant pattern recognition receptors (PRRs) is an essential part of plant immunity. Until recently, elf18, an epitope of elongation factor‐Tu (EF‐Tu), was the sole confirmed PAMP of Ralstonia solanacearum, the causal agent of bacterial wilt disease, limiting our understanding of R. solanacearum–plant interactions. Therefore, we set out to identify additional R. solanacearum PAMPs based on the hypothesis that genes encoding PAMPs are under selection to avoid recognition by plant PRRs. We calculated Tajima's D, a population genetic test statistic which identifies genes that do not evolve neutrally, for 3003 genes conserved in 37 R. solanacearum genomes. The screen flagged 49 non‐neutrally evolving genes, including not only EF‐Tu but also the gene for Cold Shock Protein C, which encodes the PAMP csp22. Importantly, an R. solanacearum allele of this PAMP was recently identified in a parallel independent study. Genes coding for efflux pumps, some with known roles in virulence, were also flagged by Tajima's D. We conclude that Tajima's D is a straightforward test to identify genes encoding PAMPs and other virulence‐related genes in plant pathogen genomes.     

Localized and Systemic Increase of Phenols in Tomato Roots Induced by Glomus versiforme Inhibits Ralstonia solanacearum

Ralstonia solanacearum is an important plant pathogen in tropical and subtropical countries. Here, we describe the inhibition of R. solanacearum as a result of increased phenols induced locally or systemically by an arbuscular mycorrhizal (AM) fungus. In pot cultures, R. solanacearum populations in the rhizosphere, on root surfaces and in the xylem were decreased by 26.7, 79.3 and 81.7%, respectively, following inoculation of tomato plants (Lycopersicon esculentum Mill.) with Glomus versiforme Berch. Colonization of the plants by both R. solanacearum and G. versiforme increased the contents of soluble phenols and cell‐wall bound phenols in root tissue, but with different patterns. Whereas R. solanacearum preferably promoted the cell‐wall bound phenol content, G. versiforme preferably enhanced the soluble phenol content. Split root experiments revealed that R. Solanacearum was inhibited by G. versiforme, and that G. versiforme also increased the phenol content systemically, but to a lesser extent than locally.     

Genetic and pathogenic diversity of Ralstonia solanacearum species complex strains isolated in Burkina Faso

Bacterial wilt caused by the Ralstonia solanacearum species complex (RSSC) is a disease that negatively affects the cultivation of Solanaceae crops in Burkina Faso. Knowledge of the pathogen diversity is essential to deploy locally adapted control methods. In this study, diseased plants showing typical bacterial wilt symptoms were collected in the three main agroclimatic zones of Burkina Faso for the detection of RSSC isolates. Strain characterization was achieved through a phylogenetic and pathogenicity diversity assessment. A total of 102 isolates were sampled, and Phylotype I (Ralstonia pseudosolanacearum) was predominant (n = 101; sequevars 14, 31, 34, and 46). The remaining isolate was characterized as Phylotype IIA-35 (Ralstonia solanacearum). Phylotypes I-31 and I-46 were predominant and both characterized as the most the aggressive group of strains amongst a subset of 33 representative isolates. Our findings provide valuable information as regard RSSC diversity that breeders and resistance programme should target in order to fight this pathogen in Burkina Faso and around the world.     

PCR-based sensitive detection of Ralstonia solanacearum from soil,eggplant, seeds and weeds

Ralstonia solanacearum is an economically important, bacterial plant pathogen which affects a wide range of crop plants. R. solanacearum survives in the soil for many years and weeds serve as symptomless carrier. One of the important aspects in controlling R. solanacearum is its early detection. In this study, detection threshold of R. solanacearum in the soil was standardised using polymerase chain reaction (PCR) method. The minimum threshold limit ranged between 6.8 × 10 and 3.6 × 10² CFU g^?1 of soil. Using this standardised protocol R. solanacearum was detected from the rhizosphere soil of eggplants showing varying degrees of wilt. PCR method was quite sensitive to detect R. solanacearum from the xylem fluid of eggplant. Presence of R. solanacearum in the soil infected with capsicum wilt was also demonstrated successfully and the minimum detection limit was 4 × 10² CFU g^?1 of soil. The bacterium was not detected from the eggplant seeds collected during 2006 and 2007 seasons. However, the bacterium was detected from the weed (Alternanthera sessilis) grown in the eggplant field indicating the possibility of weeds serving as symptomless carrier. Using our method, it is possible to detect R. solanacearum from soil, plant and weeds grown in the field at an early stage so that proper management strategies could be taken to prevent the infection and further spread of the pathogen.     

茄子青枯病拮抗放线菌XL-6的筛选、鉴定及发酵条件优化

【背景】茄子青枯病是一种毁灭性的土传病害,生产上化学农药无法对其有效防治。拮抗放线菌具有环保、无残留的优点,并已在植物多种病害上成功应用,这为茄子青枯病的生物防治提供了思路。【目的】从健康茄子根际分离获得对茄子青枯菌有显著拮抗作用的放线菌菌株。【方法】采用稀释涂布法分离放线菌;采用双层琼脂法、琼脂扩散法和平板对峙法筛选拮抗菌株;对目标菌株XL-6的形态、培养特征、生理生化特征及16S rRNA基因序列进行综合分析;通过单因素试验和正交设计试验优化目标菌株培养基组分及发酵条件。【结果】筛选得到一株对青枯菌有强抑制作用的放线菌菌株XL-6,它对其他3种病原菌均具有一定的抑制作用。菌株XL-6的形态和培养特征、生理生化特征与娄彻氏链霉菌相符,而且16S rRNA基因序列分析表明该菌株与娄彻氏链霉菌亲缘关系较近。该菌株最优发酵配方和培养条件分别为:玉米粉30.0 g/L、酵母粉5.0 g/L、K_2HPO_4 2.0 g/L、MgCl_2 2.0 g/L和NaCl 1.0 g/L;初始pH 7.0、培养基装瓶量70 mL/250 mL、摇床转速180 r/min、接种量6%,在28°C条件下培养6 d。【结论】菌株XL-6经鉴定为娄彻氏链霉菌,优化其发酵条件后对青枯菌具有更强的拮抗效果。