Does geometric morphometrics serve the needs of plasticity research?

The study of human craniofacial variation exemplifies general problems associated with the analysis of morphological plasticity that owe to the dependence of results on the methods by which phenotypic variation is quantified. We suggest a definition of plasticity that does not subordinate the developmental to the evolutionary: A process model in which changes are not a function of any mean or average, but only of the current state. Geometric morphometrics, a toolkit for assessing and visualizing biological form and its covariates, avoids some of the traditional pitfalls by focusing directly on the analysis of the two- and three-dimensional coordinates of anatomical landmarks. We discuss its potential relevance to phenotypic and developmental plasticity research, as well as some of its limitations, and demonstrate two useful analyses: assessment of asymmetry, and appraisal of integration. We itemize some of our previous studies on causes (inbreeding, environmental circumstances, etc.) and consequences (attractiveness perception) of asymmetry in humans, present some findings relating to the impact of sex on shape, and speculate about the adaptive relevance of one of these processes in particular. A closing argument points out that such considerations are possible only because of the careful separation of assumptions from empirical evidence entailed in the course of this type of data analysis.     

3D geometric morphometrics and missing-data. Can extant taxa give clues for the analysis of fossil primates?

Geometric morphometric methods constitute a powerful and precise tool for the quantification of morphological differences. The use of geometric morphometrics in palaeontology is very often limited by missing data. Shape analysis methods based on landmarks are very sensible but until now have not been adapted to this kind of dataset. To analyze the prospective utility of this method for fossil taxa, we propose a model based on prosimian cranial morphology in which we test two methods of missing data reconstruction. These consist of generating missing-data in a dataset (by increments of five percent) and estimating missing data using two multivariate methods. Estimates were found to constitute a useful tool for the analysis of partial datasets (to a certain extent). These results are promising for future studies of morphological variation in fossil taxa.     

Do we underestimate the importance of water in cell biology?

Liquid water is a highly versatile material. Although it is formed from the tiniest of molecules, it can shape and control biomolecules. The hydrogen-bonding properties of water are crucial to this versatility, as they allow water to execute an intricate three-dimensional 'ballet', exchanging partners while retaining complex order and enduring effects. Water can generate small active clusters and macroscopic assemblies, which can both transmit information on different scales.     

Do we need nasal vaccines against COVID 19 to suppress the transmission of infections?

Covid-19 vaccines have within the first year prevented about 14 million deaths but did not induce a strong mucosal immune response. Data from US, UK, Singapore and Israel showed a variable and mostly modest effects of vaccination on virus excretion during breakthrough infections. Contact studies showed decreased transmission of infection from vaccinated index cases, but the effect varied according to dominant virus type, with study type and the nature of the contact group and diminished with time after vaccination. Some researchers suspect that it is unlikely to stop the pandemic with injected vaccines alone. Promising animal experiments were conducted with mucosal vaccines. Mice nasally immunized with a chimpanzee adenovirus vector mounted a mucosal immune response, were protected against viral challenge after a single vaccine dose and suppressed nasal replication of the challenge virus. Phage T4 expressing SARS-CoV-2 spike and nucleocapsid induced a sterilizing lung immunity in nasally vaccinated mice. Also hamsters intranasally immunized with the prefusion-stabilized spike protein showed no infectious virus in nasal turbinates upon challenge. Other studies showed that intranasal vaccination with an adenovirus vaccine reduced but did not eliminated viral transmission from infected to naïve hamsters. Intranasal vaccination of rhesus macaques with adenovirus vaccines also substantially reduced or even suppressed viral replication in the upper and lower respiratory tract. Human data on mucosal SARS-CoV-2 vaccines are so far limited to safety and immunogenicity studies. Aerosolized adenovirus vaccines given either as a booster or as primary immunization were safe and induced similar or superior immune response than injected vaccines while an aerosolized influenza vectored vaccine induced only a weak humoral and cellular immune response. Overall 100 mucosal SARS-CoV-2 vaccines are in development and 20 are in clinical trials. First human trials demonstrate that this will not be an easy task.     

Transfer of scientific knowledge to practitioners: Do we need a reform of the journal policy?

Milberg (2014, Applied Vegetation Science, this issue) argues that scientific journals do not adequately respond to the practical needs of vegetation management. To bridge the gap between scientists and practitioners, he proposes a reform of applied vegetation research and of the journal Applied Vegetation Science. As the Chief Editors, we agree that it is vital to make the results of our studies accessible to decision‐makers and managers, but this cannot be at the expense of scientific research, or its publication. International scientific journals are source of theoretical foundations for applications, therefore they cannot be transformed to primarily solve practical issues while giving up their focus on understanding processes.     

Why do we need permanent plots in the study of long-term vegetation dynamics?

Abstract. This paper presents a survey of vegetation studies on permanent plots, with an emphasis on the long-term character of these studies. It makes remarks on the external and internal causes of succession, pays attention to the pathways of succession, links up permanent plots studies and chronosequences, discusses internal causes and mechanisms of succession, and finally mentions the significance of long-term vegetation dynamics for nature conservation.     

Do different disparity proxies converge on a common signal? Insights from the cranial morphometrics and evolutionary history of Pterosauria (Diapsida: Archosauria)

Disparity, or morphological diversity, is often quantified by evolutionary biologists investigating the macroevolutionary history of clades over geological timescales. Disparity is typically quantified using proxies for morphology, such as measurements, discrete anatomical characters, or geometric morphometrics. If different proxies produce differing results, then the accurate quantification of disparity in deep time may be problematic. However, despite this, few studies have attempted to examine disparity of a single clade using multiple morphological proxies. Here, as a case study for this question, we examine the disparity of the volant Mesozoic fossil reptile clade Pterosauria, an intensively studied group that achieved substantial morphological, ecological and taxonomic diversity during their 145+ million-year evolutionary history. We characterize broadscale patterns of cranial morphological disparity for pterosaurs for the first time using landmark-based geometric morphometrics and make comparisons to calculations of pterosaur disparity based on alternative metrics. Landmark-based disparity calculations suggest that monofenestratan pterosaurs were more diverse cranially than basal non-monofenestratan pterosaurs (at least when the aberrant anurognathids are excluded), and that peak cranial disparity may have occurred in the Early Cretaceous, relatively late in pterosaur evolution. Significantly, our cranial disparity results are broadly congruent with those based on whole skeleton discrete character and limb proportion data sets, indicating that these divergent approaches document a consistent pattern of pterosaur morphological evolution. Therefore, pterosaurs provide an exemplar case demonstrating that different proxies for morphological form can converge on the same disparity signal, which is encouraging because often only one such proxy is available for extinct clades represented by fossils. Furthermore, mapping phylogeny into cranial morphospace demonstrates that pterosaur cranial morphology is significantly correlated with, and potentially constrained by, phylogenetic relationships.     

In?vitro and in?vivo study on the effect of antifungal agents on hematopoietic cells in mice

Liposomal amphotericin B, voriconazole, and caspofungin are currently used for systemic and severe fungal infections. Patients with malignant diseases are treated with granulocyte-colony stimulating factor (G-CSF) for the recovery of granulocytes after chemotherapy or hematopoietic cell (HC) transplantation. Since they have a high incidence of fungal infections, they inevitably receive antifungal drugs for treatment and prophylaxis. Despite their proven less toxicity for various cell types comparatively with amphotericin B and the decrease in the number of leukocytes that has been reported as a possible complication in clinical studies, the effect of liposomal amphotericin B, voriconazole, and caspofungin on HCs has not been clarified. The present study aimed to examine the in vitro and in vivo effect of these three modern antifungals on HCs. Colony-forming unit (CFU) assays of murine bone marrow cells were performed in methylcellulose medium with or without cytokines and in the presence or absence of various concentrations of liposomal amphotericin B, voriconazole, and caspofungin. In the in vivo experiments, the absolute number of granulocytes was determined during leukocyte recovery in sublethally irradiated mice receiving each antifungal agent separately, with or without G-CSF. In vitro, all three antifungal drugs were nontoxic and, interestingly, they significantly increased the number of CFU-granulocyte-macrophage colonies in the presence of cytokines, at all concentrations tested. This was contrary to the concentration-dependent toxicity and the significant decrease caused by conventional amphotericin B. In vivo, the number of granulocytes was significantly higher with caspofungin plus G-CSF treatment, higher and to a lesser extent higher, but not statistically significantly, with voriconazole plus G-CSF and liposomal amphotericin B plus G-CSF treatments, respectively, as compared with G-CSF alone. These data indicate a potential synergistic effect of these antifungals with the cytokines, in vitro and in vivo, with subsequent positive effect on hematopoiesis.     

Reconsidering null models of diversity: Do geometric constraints on species ranges necessarily cause a mid‐domain effect?

Recent null models that place species ranges randomly within a bounded domain have produced controversial results. Many such geometric constraint models predict a peak in species richness in the centre of domains in the absence of underlying environmental gradients or interspecific interactions. We used two-dimensional simulation models to explore different ways that species ranges could interact with the domain boundary. In the rejection model, a randomly generated range that overlaps a domain boundary is removed from the simulation. In the reshaping model, a range that overlaps the domain boundary is reshaped so that the entire range is placed within the domain. The truncation model allows potential ranges to extend across the boundary, but only that portion of the range within the domain is included in the realized range. Both rejection and reshaping models produced a drop in species richness near domain boundaries, though the effect was less pronounced in the reshaping model. Our truncation model did not produce any spatial pattern in species richness. Thus the random placement of species ranges within a bounded domain does not necessarily lead to a mid-domain effect.
  Range truncation is consistent with bioclimate envelope models, which can successfully predict a species range in response to the availability of appropriate climate conditions. We argue that such flexible range sizes are more realistic than the assumption that range size is an unvarying characteristic of a species. Other range characteristics, including size and shape, can change near domain boundaries in the null models, including the truncation model. A broader consideration of range characteristics near domain boundaries could be productive.     

Does leptin mediate the effect of photoperiod on immune function in mice?

Seasonal fluctuations in immune status have been documented for avian and mammalian populations. During the late summer and early fall, immune function is bolstered to help animals cope with the more physiologically demanding winter. The environmental cue for these seasonal changes is apparently decreasing photoperiod. In the present study, we determined the potential role of leptin in mediating the effect of photoperiod on cell-mediated immune responses in male mice. Leptin-deficient (ob/ob) and littermate control mice were housed for 10 wk in either a short (8L:16D) or a long (16L:8D) photoperiod beginning at 6 wk of age. After the mice were killed, immune and reproductive organs were weighed and splenocytes isolated. The proliferative and cytokine responses (interleukin [IL]-2 and IL-4) of splenocytes to the T-cell mitogen, concanavalin A (Con A; 0-40 microg/ml), were determined. Body weights were elevated and both testes and seminal vesicle weights subnormal in ob/ob mice (by ANOVA, main effect of leptin deficiency), but thymuses and spleens were of normal size. Serum leptin levels were at minimum detection limits in ob/ob mice, but leptin levels in control mice housed at 8L:16D were higher than in control mice housed at 16L:8D. The proliferative response of splenocytes from ob/ob mice to Con A was subnormal (by ANOVA, main effect of leptin deficiency), but photoperiod had no effect on this response. Production of IL-2 in splenocytes of ob/ob mice was subnormal (by ANOVA, main effect of leptin deficiency) irrespective of photoperiod, but cells from mice housed at 8L:16D (by ANOVA, main effect of photoperiod) produced more IL-2 than cells from animals housed at 16L:8D. In contrast, a leptin deficiency did not alter IL-4 production, but cells from animals (ob/ob and controls) housed at 16L:8D produced less IL-4 than cells from animals housed at 8L:16D (by ANOVA, main effect of photoperiod). The present study suggests that both photoperiod and leptin have mutually independent effects on the proliferation of lymphocytes and cytokine production profiles. The data do not provide definitive support for the hypothesis that photoperiod-induced changes in leptin secretion mediate the effects of season on immune status.