Revision of the systematics of the genus Calliptamus Serville 1831, (Orthoptera: Acrididae: Calliptaminae) in Algeria using morphological,chemical, and genetic data

Summary. The genus Calliptamus contains swarming orthopterans that cause serious damage in Algerian agricultural systems. However, it remains difficult to identify species within this genus; a thorough understanding of the group’s systematics and the utilization of novel taxonomic criteria are needed. We used morphological analysis along with two other methods of species identification – chemotaxonomy with cuticular compounds and DNA barcoding involving the COI gene – to classify 81 individual grasshoppers collected at two different sites in the Sétif region (northeastern Algeria). The chemotaxonomic analyses yielded ambiguous results, but DNA barcoding allowed us to differentiate two Calliptamus species found in Algeria: Calliptamus barbarus (Costa 1836), and Calliptamus wattenwylianus (Pantel 1896). Several morphological criteria used in identification keys appear to reflect differences among morphotypes rather than differences between species, and their taxonomic specificity is not supported by the barcoding data. The number of spines on the hind tibia is the only morphological criterion that reflected genetic differences between species; it is thus considered to be a taxonomically useful feature for identifying species in this genus.     

三维几何形态学概述及其在昆虫学中的应用

长期以来二维（two-dimensional, 2D）数据是几何形态学（geometric morphometrics）分析的最主要的数据类型,在推动几何形态学的发展过程中起到了奠基性的作用,并也解决了很多重大的科学问题,展示了几何形态学强大的科学计算能力与问题解决能力。但有些特殊的科学问题或者特殊的形态结构,无法通过二维数据完美解决,亟需大规模、大尺度三维（three-dimensional, 3D）数据的支持,这对几何形态学的三维化发展提出需求。更重要的是,随着三维数据获取成本的日渐降低,大量三维数据涌现出来。因此,三维几何形态学应运而生。本文对三维几何形态学的原理及其应用进行了概述,重点探讨了三维几何形态学与二维几何形态学的异同点,并对前者的两个发展阶段（少量样本的形态模拟与准定量比较及大量样本的定量比较）进行了概述,评价了四维数据和有限元等方法的应用,指出了该方法在昆虫学领域的发展潜力,最后对该方法在样本量增加、硬件提升、数据分辨率提高、新算法的开发、分析结果的呈现及3D打印等方面的发展趋势进行了展望。     

A re-evaluation of taxonomic status of Montivipera (Squamata: Viperidae) from Iran using a DNA barcoding approach

Mitochondrial COI sequences were used to re-evaluate the taxonomic status of Montivipera from Iran including all of the known Iranian species. Considering the genetic distances among species, the topology of the phylogenetic trees and principles of species definition, the number of species within the genus Montivipera in Iran should be reduced from four to one species, Montivipera raddei, exhibiting several pretty color patterns. It looks as if superficial differences in morphology and particularly color pattern induced herpetologists in describing species such as Montivipera albicornuta, Montivipera latifii and Montivipera kuhrangica.     

Monitoring nutrition in small ruminants with the aid of near infrared reflectance spectroscopy (NIRS) technology: A review

This review aims to evaluate the contribution of near infrared reflectance spectroscopy (NIRS) to monitor nutrition in small ruminants, with particular emphasis on the use of feed spectra and fecal spectra. NIRS provides satisfactory accuracy in the analysis of the chemical constituents of feeds for small ruminants, e.g., crude protein and cell wall composition, and is sometimes better than in vitro procedures for predicting in vivo digestibility and the available energy in feeds. In addition, in vitro digestibility can be accurately estimated by NIRS. The effective rumen degradability of protein could potentially be accurately predicted by NIRS, which would eliminate the need for rumen-fistulated animals. Good accuracy in the prediction of tannins has been reported for narrow, single-species applications, as well as for broad arrays of browse species. The identification of NIR segments corresponding to undigested entities has potential to help in providing spectral markers of digestibility. Fecal output can easily be evaluated, using the NIRS-aided analysis of polyethylene glycol (PEG) administered as external indigestible marker. Analysis of NIR spectra of the feces enables the accurate prediction of the chemical characteristics of the feed (dry matter digestibility and crude protein, cell wall attributes, PEG-binding tannins) in stall-fed and grazing animals, and to some extent, of the botanical composition of diets at pasture. Thus, fecal NIRS methodology holds the potential to provide nutritional diagnoses for farmers raising small ruminant.     

Phylogenetic systematics of Colotis and associated genera (Lepidoptera: Pieridae): evolutionary and taxonomic implications

We investigated the genetic diversity and phylogenetic placement of the butterflies in the genus Colotis and eight related pierid genera using sequence information from two mitochondrial and two nuclear genes. To establish the status of species, we initially barcoded 632 specimens representative of all genera and most species and subspecies in those genera. A subset was then selected for phylogenetic analysis where additional gene regions were sequenced: 16S rRNA (523 bp), EF‐1α (1126 bp) and wg (404 bp). DNA barcode results were largely congruent with the traditional classification of species in the Colotis group, but deep splits or lack of genetic divergence in some cases supported either species‐level differentiation or synonymy. Despite using information from four genes, the deeper nodes in our phylogeny were not strongly supported, and monophyly of the ‘Colotis group’ and the genera Colotis and Eronia could not be established. To preserve the monophyly of Colotis, we revive the genus Teracolus for three outlying species previously in Colotis (i.e. Colotis eris, Colotis subfasciatus and Colotis agoye), as well as the genus Afrodryas for Eronia leda. The position of Calopieris is unresolved although it appears to be well outside the molecular variation in Colotis (s.l.). A dispersal/vicariance analysis suggested that major diversification in Colotis (s.str.) occurred in Africa with subsequent dispersal to India and Madagascar.     

The composition and taxonomic significance of fatty acid patterns in three white rust species: <Emphasis Type="Italic">Albugo amaranthi,A. candida and A. tragopogonis</Emphasis> (Peronosporales,Albuginaceae)

The fatty acid composition of the biotrophic white rust species A. amaranthi, A. candida and A. tragopogonis was identified by means of GC and GC/MS analysis. Besides the common saturated fatty acids of C14 to C22 chain length, several unusual monounsaturated and polyunsaturated fatty acids were present in significant amounts in the lipid profiles of the three species. Each taxon revealed its own characteristic pattern which was uniform among populations of different geographic origin and independent from the host species. Fatty acids were obtained from minute amounts of sporangia collected from the surface of desiccated host plants. Comparison of herbarium specimens revealed a decrease of polyunsaturated compounds after storage for 30 months at room temperature, but still allowed unquestionable species differentiation.     

A combined morphological and molecular phylogenetic analysis of Parthenocissus (Vitaceae) and taxonomic implications

Parthenocissus (the Virginia creeper genus, Vitaceae) consists of 13 species and shows a disjunct distribution between Asia and North America. We investigated the inflorescence structure, calyx morphology, appendages on the inner side of petals, leaf epidermis, pollen and seed characters throughout the genus. A combined phylogenetic analysis with 27 morphological and 4137 molecular characters was conducted and the result was largely congruent with that of the previous molecular work, but with higher resolution. The combined analysis identified two clades corresponding to the Asian and North American taxa. Parthenocissus feddei was resolved as closely related to the clade containing P. cuspidifera, P. heterophylla and P. semicordata. The four species share synapomorphies of having conspicuously raised veinlets, an obscurely five‐ (to eight‐) lobed calyx, appendages on the inner side of petals covering the entire length of anthers and foveolate pollen exine ornamentation. Within the Old World clade, the pentafoliolate species were weakly supported as more closely related to species with both simple and trifoliolate leaves. Furthermore, the ancestral states of tendril apices, inflorescence structure, appendages on the inner side of petals and exine ornamentation of pollen grains were reconstructed on the molecular strict consensus tree. The appendages on the inner side of petals and exine ornamentation of pollen grains were suggested to be important characters in the taxonomy of Parthenocissus, especially for species with trifoliolate leaves. Finally, the previous classifications of Parthenocissus were evaluated within the phylogenetic framework. © 2011 The Linnean Society of London, Botanical Journal of the Linnean Society, 2011, ?? , ??–??.     

Phycocolloid chemistry as a taxonomic indicator of phylogeny in the Gigartinales, Rhodophyceae: A review and current developments using Fourier transform infrared diffuse reflectance spectroscopy

The taxonomic significance of the polysaccharide structures of algal cell walls has been underscored several times over the past few decades but has never been pursued systematically. Many changes in red algal systematics and the biochemical analyses of phycocolloids have occured in recent years. The cell-wall composi-tion of representatives of 167 (24.7%) genera and 470 (11.5%) species of red algae has been documented.The method developed by Chopin and Whalen for carrageenan identification by Fourier transform infrared diffuse reflectance spectroscopy is extended to the study of phycocolloids for diverse species in many red algal orders. This paper focuses on the Gigartinales in which representatives of 28 (68.3%) families, 88 (50.6%) genera and 224 (27.9%) species have been analyzed. In light of recent molecular phylogenies, some patterns of distribution of key phycocolloid attributes, corresponding to familial and ordinal level groupings, are emerging; however, more species remain to be analyzed. The well-documented biochemical alternation of generations in the Phyllophoraceae, Petrocelidaceae and Gigartinaceae still holds (with two exceptions), but this pattern was not recorded in other families of Gigartinales.     

Morphological variation versus genetic divergence: a taxonomic implication for Mogannia species (Cicadidae: Cicadinae)

Species showing intraspecific morphological variation tend to be very difficult to identify using morphological characters. One such example is the cicada genus Mogannia where some species show considerable intraspecific variation mainly exhibited by wing pattern and body colouration. Thirty-one variants covering different putative species of Mogannia were recognized and illustrated in the present paper. Molecular data of mitochondrial COI and Cytb sequences were employed to test the level of variation and phylogeny of them. The existence of a ‘barcoding gap’ between intraspecific and interspecific genetic divergences and the reciprocally monophyletic clades indicate that all the closely related variants represent a single species, and that all these variants correspond to six species, respectively. However, the evolutionary relationships of intraspecific variants are not resolved possibly due to insufficient genetic variation among them. Our results indicated that some morphological characters, especially the wing pattern and body colouration, and even the number of apical processes of the aedeagus in a couple of related species, must be used with great caution in delimiting Mogannia species and their relatives. The factors responsible for intraspecific morphological variation and phylogeny of Mogannia spp. are preliminarily discussed.     

A taxonomic clarification of Petrorhagia section Kohlrauschia (Caryophyllaceae)

A taxonomic clarification of Petrorhagia section Kohlrauschia (Caryophyllaceae). The morphology of the inflorescence bracts and seeds in Petrorhagia glumacea and the large-flowered form of P. 'prolifera' is reported together with observations on some artificially produced hybrids. Petorhagia glumacea and large-flowered p. 'prolifera' can be distinguished on the basis of bract and seed morphology. The taxonomic status of large-flowered P. 'prolifera' is recognized as P. obcordata. Two groups of intermediate, natural populations are described from the Peloponnese and it is suggested that they are of hybrid origin. The seeds of P. obcordata are polytypic and show a geographical distribution pattern. Seed morphology, which is the most useful diagnostic character for identification, is described in P. prolifera, P. velutina and the tetraploid P. nanteuilii.     

Taxonomic studies on Senecio aquaticus (Asteraceae). A recommendation for the taxonomic status of Aquaticus and Barbareifolius

Aquaticus and Barbareifolius are two subgroups of Senecio aquaticus s. l. (Asteraceae) that have been recognized at various taxonomic levels in European taxonomic literature. In this paper we present the results of morphological studies on S. aquaticus s. l. in order to establish the taxonomic status of these two subgroups. Using multivariate morphometric techniques (discriminant analysis and principal component analysis), we examined the diagnostic potential of 60 macro-morphological characters and studied the delimitation of Aquaticus and Barbareifolius. Seven of the characters studied were included in the discriminant function of the stepwise discriminant analysis and are therefore considered to be the most reliable diagnostic characters of Aquaticus and Barbareifolius. Barbareifolius has, amongst other distinguishing traits, a more divaricate inflorescence than Aquaticus. Because both subgroups are distinct but overlapping clusters in multivariate morphometric space, and because clear differences in their geographical distribution are absent, we recommend the taxonomic status of variety to both groups. Following the rules of nomenclature, Aquaticus and Barbareifolius should therefore be named S. aquaticus Hill var. aquaticus and S. aquaticus Hill var. barbareifolius (Krock.) Wimm. & Grab.  © 2004 The Linnean Society of London, Botanical Journal of the Linnean Society , 2004, 145 , 489–498.     

A taxonomic revision of Tectaria (Tectariaceae) from New Caledonia

A taxonomic revision of Tectaria from New Caledonia is presented here based on a thorough study of herbarium specimens from New Caledonia and adjacent Pacific islands. Six species of Tectaria are presently recognized in New Caledonia. Tectaria kouniensis and T. pseudosinuata are reduced to synonyms of T. dissecta and T. sinuata, respectively. The morphological limit between T. seemannii and T. sinuata and the confused specimen citations in previous accounts are clarified. Apart from T. dissecta, the other five species, i.e. T. lifuensis, T. moorei, T. seemannii, T. sinuata and T. vieillardii, are mainly distributed in New Caledonia, with only T. seemannii and T. sinuata recently reported also from Vanuatu. A key to species, typification of accepted names and relevant synonyms, and brief comments on the relationships of species are provided.     

A taxonomic review of the Gyrinidae (Coleoptera) in Korea

A taxonomic review of Korean Gyrinidae is presented. Seven species [Dineutus orientalis (Modeer, 1776), Gyrinus gestroi Régimbart, 1883, Gyrinus japonicus Sharp, 1873, Gyrinus pullatus Zaitzev, 1908, Orectochilus punctipennis Sharp, 1884, Orectochilus Regimbarti Sharp, 1884 and Orectochilus villosus (Müller, 1776)] in three genera are recognized, one of which (Orectochilus punctipennis Sharp, 1884) is reported for the first time in Korea. We also found that Gyrinus curtus Motschulsky, 1866 previously recorded in Korea was an incorrect identification of Gyrinus pullatus Zaitzev, 1908. Habitus and SEM photographs, distribution maps, keys, and diagnoses of genera and species are provided.     

中国实蕨属的分类修订

对实蕨属Bolbitis的17种植物的孢子进行了扫描电镜观察。根据孢子周壁特征,中国产实蕨属的孢子明显可分为3种类型：A型孢子具网状周壁,B型孢子具鸡冠状-波状周壁,C型孢子具平滑的波状周壁。孢子周壁特征、叶脉式样和叶片顶部的形态是实蕨属中最有价值的分类学性状。根据标本检查,结合野外调查和孢子形态观察,对中国产实蕨属的分类进行了修订,确定中国有实蕨属植物20种和3杂交种,其中包括2个新组合B. fengiana (Ching) S. Y. Dong和B. medogensis (Ching &; S. K. Wu) S. Y. Dong,以及2个中国新分布B. costata Ching ex C. Chr.和B. hookeriana K. Iwats.。将B. latipinna Ching、B. media Ching &; Chu H. Wang、B. yunnanensis Ching、Egenolfia crassifolia Ching、E. crenata Ching &; P. S. Chiu、E. fengiana Ching、E. medogensis Ching &; S. K. Wu和E. ×yunnanensis Ching &; P. S. Chiu等8个名称处理为新异名。文中给出了分种检索表、每个种的生境和分布资料、大多数种的特征集要和孢子扫描电镜照片。     

DNA barcoding largely supports 250 years of classical taxonomy: identifications for Central European bees (Hymenoptera,Apoidea partim)

This study presents DNA barcode records for 4118 specimens representing 561 species of bees belonging to the six families of Apoidea (Andrenidae, Apidae, Colletidae, Halictidae, Megachilidae and Melittidae) found in Central Europe. These records provide fully compliant barcode sequences for 503 of the 571 bee species in the German fauna and partial sequences for 43 more. The barcode results are largely congruent with traditional taxonomy as only five closely allied pairs of species could not be discriminated by barcodes. As well, 90% of the species possessed sufficiently deep sequence divergence to be assigned to a different Barcode Index Number (BIN). In fact, 56 species (11%) were assigned to two or more BINs reflecting the high levels of intraspecific divergence among their component specimens. Fifty other species (9.7%) shared the same Barcode Index Number with one or more species, but most of these species belonged to a distinct barcode cluster within a particular BIN. The barcode data contributed to clarifying the status of nearly half the examined taxonomically problematic species of bees in the German fauna. Based on these results, the role of DNA barcoding as a tool for current and future taxonomic work is discussed.     

基于分子宏条形码分析四川卧龙国家级自然保护区雪豹的食性

作为中亚和青藏高原山地生态系统中的顶级捕食者, 雪豹(Panthera uncia)对于维持食物网结构和生态系统稳定性有重要作用。了解雪豹的食性组成和变化对于理解其生态系统功能和物种间相互作用有重要意义。以往的雪豹食性分析多基于对其粪便中食物残渣的形态学鉴定, 但准确度受人员经验和主观因素影响较大。邛崃山脉位于雪豹分布区东南缘, 该区域的雪豹种群规模小且相对孤立, 研究匮乏。本研究基于非损伤性取样, 在邛崃山脉的卧龙国家级保护区采集疑似雪豹粪便样品38份, 首先提取粪便DNA, 并扩增线粒体DNA 16S rRNA基因片段进行分子物种鉴定, 确定其中22份为雪豹粪便样品。随后, 利用脊椎动物通用引物和雪豹特异性阻抑引物扩增粪便DNA中的食物成分, 并进行高通量测序, 分析雪豹食性构成。食性分析结果显示岩羊(Pseudois nayaur)是卧龙地区雪豹最主要的食物, 在67%的样品中均有检出。家牦牛(Bos grunniens)在33%的样品中出现, 也在雪豹食性中占较高比例。此外, 鼠兔(Ochotona spp.)和鸟类也在少量样品中发现。可见, 野生猎物是卧龙地区雪豹的主要食物资源; 与大世界大多数其他地区的雪豹食性相同, 野生大型有蹄类是雪豹最重要的食物。然而家畜(牦牛)在卧龙雪豹食谱中有相当高的占比, 显示该区域内可能存在较为严重的由雪豹捕食散养家畜引起的人兽冲突问题。