Application of Spatial Location Information to SIP

This paper introduces an approach for providing the Spatial Location (SLO) information of the Session Initiation Protocol (SIP) devices connected to wire and wireless IP networks. The aim of the paper is to set up the framework for providing emergency call services. This method uses SIP as transport and the SLO as data format inserted in the SIP payload. It analyses the relationship among the network elements involved in the architecture, and its functionality for providing emergency call services using SIP. In conclusion, this proposal track down an emergency call via SIP, and additionally enables SIP to support some other location-related services such as messaging, and location-based commerce.     

A Comparison of Protocols for Updating Location Information

Detailed location information of mobile objects, for example that of a user with a mobile computer or phone, is an important input for many location-aware applications. However, constantly updating the location information for thousands of mobile objects is not feasible. Therefore, special update protocols for location information are required that transmit the information as efficiently as possible, that is requiring only few update messages, while still being effective in returning the location information with the desired accuracy. Different classes of such update protocols are described in this paper and a new combined protocol is proposed. To be able to compare their effectiveness and efficiency, we present an analysis for the minimum and average resulting accuracy of the location information in comparison with the number of messages transmitted. We also present the results of simulations that we have performed to back up our analysis.     

介绍一种半薄切片定位样品的方法

介绍了一种半薄切片定位样品的方法。此法与前人的方法不同之处在于位于载玻片之上被重新包埋于塑料环内的切片与载玻片的分离真人处步骤是“切片被包埋聚合好后,立即从６０￣６５℃温箱内被转入冰箱冷冻室中（－１８℃）放置５￣１０分钟。然后,将载玻征从冷冻室中取出,轻推塑料环,即可使包埋在塑料环内的切片与载玻片分离。这一方法成功地解决了样品中靶细胞的发育时期确定和样品丢失问题。而且还有简单、易操作和成功率高等优     

侗族村寨选址布局特征及其生态智慧

以湘桂黔侗族聚居区统计数据、田野调查资料和矢量地图为数据源,运用ArcGIS空间分析工具分析侗族村寨的选址布局特征以及其中蕴含的生态智慧内容。结果表明：1）传统侗族村寨主要在海拔500~900m,坡度7°~15°,坡向为北或西北方,与水源距离小于100m的区域选址建寨;2）侗族村寨整体上在高程、坡度、坡向和与水系距离上属于高值分布,侗族村寨选址布局的空间特征与地理环境因素密切相关;3）传统侗寨的选址布局具有地势中等、坡度适宜、背风向阳、易取水的特点,蕴含着主动适应环境的生态智慧,体现了“因地制宜、与自然共生”的生态思想,对于维持人地和谐具有积极意义。     

A Predictive Framework for Integrating Disparate Genomic Data Types Using Sample-Specific Gene Set Enrichment Analysis and Multi-Task Learning

Understanding the root molecular and genetic causes driving complex traits is a fundamental challenge in genomics and genetics. Numerous studies have used variation in gene expression to understand complex traits, but the underlying genomic variation that contributes to these expression changes is not well understood. In this study, we developed a framework to integrate gene expression and genotype data to identify biological differences between samples from opposing complex trait classes that are driven by expression changes and genotypic variation. This framework utilizes pathway analysis and multi-task learning to build a predictive model and discover pathways relevant to the complex trait of interest. We simulated expression and genotype data to test the predictive ability of our framework and to measure how well it uncovered pathways with genes both differentially expressed and genetically associated with a complex trait. We found that the predictive performance of the multi-task model was comparable to other similar methods. Also, methods like multi-task learning that considered enrichment analysis scores from both data sets found pathways with both genetic and expression differences related to the phenotype. We used our framework to analyze differences between estrogen receptor (ER) positive and negative breast cancer samples. An analysis of the top 15 gene sets from the multi-task model showed they were all related to estrogen, steroids, cell signaling, or the cell cycle. Although our study suggests that multi-task learning does not enhance predictive accuracy, the models generated by our framework do provide valuable biological pathway knowledge for complex traits.     

Modeling Information Quality Risk for Data Mining in Data Warehouses

Information Quality (IQ) is a critical factor for the success of many activities in the information age, including the development of data warehouses and implementation of data mining. The issue of IQ risk is recognized during the process of data mining; however, there is no formal methodological approach to dealing with such issues.

Consequently, it is essential to measure the risk of IQ in a data warehouse to ensure success in implementing data mining. This article presents a methodology to determine three IQ risk characteristics: accuracy, comprehensiveness, and non-membership. The methodology provides a set of quantitative models to examine how the quality risks of source information affect the quality for information outputs produced using the relational algebra operations: Restriction, Projection, and Cubic product. It can be used to determine how quality risks associated with diverse data sources affect the derived data. The study also develops a data cube model and associated algebra to support IQ risk operations.     

Positional Information,Positional Error,and Readout Precision in Morphogenesis: A Mathematical Framework

The concept of positional information is central to our understanding of how cells determine their location in a multicellular structure and thereby their developmental fates. Nevertheless, positional information has neither been defined mathematically nor quantified in a principled way. Here we provide an information-theoretic definition in the context of developmental gene expression patterns and examine the features of expression patterns that affect positional information quantitatively. We connect positional information with the concept of positional error and develop tools to directly measure information and error from experimental data. We illustrate our framework for the case of gap gene expression patterns in the early Drosophila embryo and show how information that is distributed among only four genes is sufficient to determine developmental fates with nearly single-cell resolution. Our approach can be generalized to a variety of different model systems; procedures and examples are discussed in detail.     

一种预测细胞凋亡蛋白的亚细胞定位的新方法

细胞凋亡蛋白对生物体的发育、维持内环境稳定及人们理解细胞凋亡机制非常重要。文中提出了一种新的蛋白质序列特征提取方法—三肽离散源方法。计算了蛋白质序列中紧邻三联体的出现个数,利用离散增量极小化对凋亡蛋白进行定位预测;同时推广了张春霆等提出的内容平衡精度指数,使其能评估任意类的分类问题。实验结果表明:在凋亡蛋白定位预测研究中,三肽离散源方法在提高总体预测精度的同时,能够较好的解决样本不均衡问题;而内容平衡精度指数能比传统的总体预测精度更准确的评估预测算法的预测能力,有效的反映预测算法对样本不均衡问题的相容能力。     

A Transparent and Transferable Framework for Tracking Quality Information in Large Datasets

The ability to evaluate the validity of data is essential to any investigation, and manual “eyes on” assessments of data quality have dominated in the past. Yet, as the size of collected data continues to increase, so does the effort required to assess their quality. This challenge is of particular concern for networks that automate their data collection, and has resulted in the automation of many quality assurance and quality control analyses. Unfortunately, the interpretation of the resulting data quality flags can become quite challenging with large data sets. We have developed a framework to summarize data quality information and facilitate interpretation by the user. Our framework consists of first compiling data quality information and then presenting it through 2 separate mechanisms; a quality report and a quality summary. The quality report presents the results of specific quality analyses as they relate to individual observations, while the quality summary takes a spatial or temporal aggregate of each quality analysis and provides a summary of the results. Included in the quality summary is a final quality flag, which further condenses data quality information to assess whether a data product is valid or not. This framework has the added flexibility to allow “eyes on” information on data quality to be incorporated for many data types. Furthermore, this framework can aid problem tracking and resolution, should sensor or system malfunctions arise.     

地理信息系统及其在动物空间行为研究中的应用

空间属性是动物行为的重要特征,也是行为生态学研究中必须要面对的难题之一。地理信息系统(Geographic Information System,GIS)具有强大的空间分析功能,它在动物行为生态学研究中得到了越来越广泛的应用,如生境选择、领域分析、迁徙路线、活动节律等。本文较系统地阐述了GIS的原理以及在行为生态学研究中所涉及的基本概念和原理,对近年来利用GIS进行的行为生态学研究做了回顾和总结,并对其未来的发展进行了展望。     

Location of the bioactive pentacyclic triterpene ursolic acid in the membrane. A molecular dynamics study

Ursolic acid (URS), an ursane-representative bioactive pentacyclic triterpene, is a plant secondary metabolite presenting a great number of pharmacological beneficial properties. Due to the prominent hydrophobic character of URS and its high phospholipid/water partition coefficient, some of its possible effects on biological systems might be related to its capacity to interact with and locate into the membrane as well as interact specifically with its components. In this work, we have studied the location and orientation of URS in the membrane by molecular dynamics simulations. At the end of the simulation, URS locates near the surface in vicinity to the phospholipid headgroups but its orientation depends on lipid composition, its final average orientation being a nearly parallel one in POPC but a nearly perpendicular one in POPC/POPE/POPG/PSM/Chol. Furthermore, in the complex lipid system URS seems to interact specifically with POPE, PSM, and Chol excluding POPG from its surroundings, which could lead to phase separation and domain formation. The different disposition of URS in the membrane and its specific interaction with certain lipid types could lead to a significant perturbation of the membrane structure. The important pharmacological activities of URS would rely on the effects it exerts on the membrane structure in general and the existence of specific interactions with specific lipids in particular.     

A Comprehensive Specimen-Specific Multiscale Data Set for Anatomical and Mechanical Characterization of the Tibiofemoral Joint

Understanding of tibiofemoral joint mechanics at multiple spatial scales is essential for developing effective preventive measures and treatments for both pathology and injury management. Currently, there is a distinct lack of specimen-specific biomechanical data at multiple spatial scales, e.g., joint, tissue, and cell scales. Comprehensive multiscale data may improve the understanding of the relationship between biomechanical and anatomical markers across various scales. Furthermore, specimen-specific multiscale data for the tibiofemoral joint may assist development and validation of specimen-specific computational models that may be useful for more thorough analyses of the biomechanical behavior of the joint. This study describes an aggregation of procedures for acquisition of multiscale anatomical and biomechanical data for the tibiofemoral joint. Magnetic resonance imaging was used to acquire anatomical morphology at the joint scale. A robotic testing system was used to quantify joint level biomechanical response under various loading scenarios. Tissue level material properties were obtained from the same specimen for the femoral and tibial articular cartilage, medial and lateral menisci, anterior and posterior cruciate ligaments, and medial and lateral collateral ligaments. Histology data were also obtained for all tissue types to measure specimen-specific cell scale information, e.g., cellular distribution. This study is the first of its kind to establish a comprehensive multiscale data set for a musculoskeletal joint and the presented data collection approach can be used as a general template to guide acquisition of specimen-specific comprehensive multiscale data for musculoskeletal joints.     

谷子雄性不育系1066A不育基因和黄苗基因的染色体定位

以谷子（Setaria italica(L).Beauv.)雄性不育系1066A为母本,豫谷1号三体（1-7）及四体8和四体9作父本进行杂交,应用初极三体分析法,进行了谷子雄性不育基因和黄苗基因的染色体定位研究。通过配置大时杂交组合和反复授粉,利用豫谷1号三体的极少量花粉,获得了三体2-9的F1代杂种,各杂种三体的形态与豫谷1号三体基本个似,略有差异,苗色呈绿色且可育。杂种F2植株的育性都产生分离。结果是三体3、5、7、8、9的F2代分离出的可育株与不育标之比为3：1,三体6的可育株与不育株之比为14：1（x^2=0.012,p=0.01)。杂种F2分离出的绿苗与黄苗之比只有三体7为12：1（X^2=0.36,P=0.01),其他均为3:１。因此,可以确定1066A的不育基因为隐性单基因,位于第6号染色体上,该品系的黄苗基因也是隐性单基因,位于第7号染色体上。     

Location and status of embryos in the genital tract of superovulated cows 4 to 6 days after insemination

Sixty lactating Holstein cows were treated, in 3 groups, with Folltropin and Estrumate to induce superovulation and then bred by artificial insemination (AI). Embryos were collected at slaughter on D 4, 5 or 6 after insemination by flushing separately the oviducts, uterine tip and the remainder of the uterine horn. The embryos and ova recovered accounted for 64.6 ± 4.3% of the ovulations, and there were no differences due to day, side or group. On D 4, 60% of the embryos were found in the oviducts; on Days 5 and 6, 80 and 91%, respectively, were found in the tip of the uterine horn. Viability was independent of the site of recovery; over 91% of the embryos grew and developed in culture for at least 3 d.     

Integrated Modeling Framework for Manufacturing Systems: A Unified Representation of the Physical Process and Information System

The task of process modeling in a manufacturing environment centers around controlling and improving the flow of materials. This flow comprises a complicated web of control and physical systems. Despite a variety of manufacturing system modeling approaches, more rigorous process modeling is required. This paper presents an integrated modeling framework for manufacturing systems (IMF-M). Conceptual modeling of physical materials flow supported by a graphical representation facilitates improvement of operations in manufacturing environments. A declarative and executable representation of control information systems helps to improve information management by managing a variety of information models with improved readability and reusability. A unified representation of the physical process and information system provides a common modeling milieu in which efforts can be coordinated among several groups working in the different domains of scheduling, shop floor and logistics control, and information system. Since the framework helps adapt to the changes of the physical process and information system affecting each other in a consistent manner, the modeling output enhances integration of the manufacturing system.     

基于植保大数据的病虫害移动智能采集新设备

为提高农作物重大病虫害发生信息自动化、智能化采集能力,全面提升监测预警水平,笔者基于大数据、人工智能和深度学习技术,研发了一款农作物病虫害移动智能采集设备——智宝,主要实现了3个方面的功能:一是病虫害发生信息自动采集上报.通过该产品进行人工拍照,可实现对田间农作物重大病虫害发生图像、发生位置、发生数量、微环境因子等数据的实时采集和上报.二是自动识别计数.基于植保大数据与人工智能技术,通过构建病虫害自动识别系统,可实现重大病虫害精准识别与分析,只要拍摄照片,即可快速、精确地识别病虫害种类,并自动计数、上报到指定的测报系统.三是自动分析判别分级.针对拍摄采集上报的重大病虫害发生信息,系统可在自动识别和计数的基础上,进一步对病虫害发生严重程度进行智能判别分级,甚至根据相关预测模型,对病虫害的发生趋势进行辅助分析预测,提出预测建议.通过2016—2019年组织多地植保机构进行试验改进,该技术产品日趋成熟,有望在未来的农作物病虫害发生信息采集和预测预报工作中推广使用.     

基于地理信息系统的重庆地区COVID-19疫情空间分布格局演化

探讨重庆地区COVID-19疫情时空分布特征及扩散模式,以期未来为本地应对公共卫生应急事件积累经验。本文收集重庆市卫生健康委员会公布的官方数据,采用ArcGIS 10.2软件进行空间计量分析,并实现区域分布可视化,描述性统计和社会因素相关分析采用SPSS 20.0和Graphpad Prism 7.0软件进行统计和作图。结果5个时间节点,重庆地区COVID-19累计报告发病率的Moran’s I值均为正值(均P<0.05);局部Getis-ord Gi*指数分析探测到渝东北高渝东南低的态势越发明显;标准差椭圆展布呈现东北-西南的空间格局,随时间的变化经历了扩散-极化-扩散-稳定的过程;重心走势呈现向西南(渝西片区)移动距离逐渐减弱态势,市内出行(r=0.449,P=0.007)和交通网络(rs=0.321,P=0.049)对COVID-19的流行具有正相关性。重庆地区COVID-19疫情存在空间聚集性,高发聚集区域集中在渝东北片区,GIS较好地揭示了疫情聚集性变化过程和传播的时空趋势,市内出行和交通网络2个社会因素对重庆地区疫情影响较大。     

A Phylogenetic Framework for the Aquaporin Family in Eukaryotes

A comprehensive evolutionary analysis of aquaporins, a family of intrinsic membrane proteins that function as water channels, was conducted to establish groups of homology (i.e., to identify orthologues and paralogues) within the family and to gain insights into the functional constraints acting on the structure of the aquaporin molecule structure. Aquaporins are present in all living organisms, and therefore, they provide an excellent opportunity to further our understanding of the broader biological significance of molecular evolution by gene duplication followed by functional and structural specialization. Based on the resulting phylogeny, the 153 channel proteins analyzed were classified into six major paralogous groups: (1) GLPs, or glycerol-transporting channel proteins, which include mammalian AQP3, AQP7, and AQP9, several nematode paralogues, a yeast paralogue, and Escherichia coli GLP; (2) AQPs, or aquaporins, which include metazoan AQP0, AQP1, AQP2, AQP4, AQP5, and AQP6; (3) PIPs, or plasma membrane intrinsic proteins of plants, which include PIP1 and PIP2; (4) TIPs, or tonoplast intrinsic proteins of plants, which include alphaTIP, gammaTIP, and deltaTIP; (5) NODs, or nodulins of plants; and (6) AQP8s, or metazoan aquaporin 8 proteins. Of these groups, AQPs, PIPs, and TIPs cluster together. According to the results, the capacity to transport glycerol shown by several members of the family was acquired only early in the history of the family. The new phylogeny reveals that several water channel proteins are misclassified and require reassignment, whereas several previously undetermined ones can now be classified with confidence. The deduced phylogenetic framework was used to characterize the molecular features of water channel proteins. Three motifs are common to all family members: AEF (Ala-Glu-Phe), which is located in the N-terminal domain; and two NPA (Asp-Pro-Ala) boxes, which are located in the center and C-terminal domains, respectively. Other residues are found to be conserved within the major groups but not among them. Overall, the PIP subfamily showed the least variation. In general, no radical amino acid replacements affecting tertiary structure were identified, with the exception of Ala-->Ser in the TIP subfamily. Constancy of rates of evolution was demonstrated within the different paralogues but rejected among several of them (GLP and NOD).     

A Wetland Protection Domain Ontology Construction for Knowledge Management and Information Sharing

Over the past years, a large variety of methods have been proposed to protect wetlands—the kidney of the earth. How to apply these methods is an urgently crucial problem. This study applies ontology technology to wetland protection domains, and provides a potential alternative tool to the current mainstream methods in knowledge management and information sharing. We focus on two main objectives. The first is to propose the construction of wetland protection ontology—WP-Onto (Wetland Protection Ontology), which consists of four stages: (i) demand analysis; (ii) establishment of knowledge set; (iii) refinement and extraction of concepts and relations, and establishment of ontology; (iv) encoding and formalization of ontology. The second is the application of ontology, consisting of information sharing and knowledge management.     

Stellate Cells in the Medial Entorhinal Cortex Are Required for Spatial Learning

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