On the mechanism of non-electrolyte permeation through lipid bilayers and through biomembranes

The temperature effects on the permeation of polyhydroxy alcohols through the lipid bilayers of liposomes with a great variety in chemical composition were studied. Although important differences in the permeability of the various lipid bilayers were observed, Arrhenius plots demonstrated that the activation energy is independent of the degree of unsaturation or the presence of cholesterol in the paraffin barriers. The activation energies found for the penetration of a bilayer with a liquid paraffin core are 14.3 kcal for glycol, 19.4 kcal for glycerol, and 20.8 kcal for erythritol. These values are in agreement with the energies that can be expected for complete dehydration of the permeant molecules. The idea that the activation energy is determined by the number of hydrogen bonds with water is supported by the finding that a series of different diols did demonstrate practically identical activation energies. Studies on a number of biological membranes demonstrated the same activation energies for the penetration of glycerol and erythritol as found in the experiments with liposomes. These facts support the view that both the lipid bilayers and the biological membranes are penetrated by single fully dehydrated molecules.     

Regeneration of soapnut tree through somatic embryogenesis and assessment of genetic fidelity through ISSR and RAPD markers

Somatic embryogenic system was developed in Sapindus mukorossi Gaertn. using rachis as explants from a mature tree. Explants showed callus initiation on Murashige and Skoog medium supplemented with TDZ (1-Phenyl-3-(1, 2, 3-thiadiazol-5-yl) urea), zeatin or 6-benzylaminopurine. Induction of somatic embryogenesis was achieved on both MS basal medium and MS medium supplemented with 8.88 µM 6-benzylaminopurine. Hundred percent embryogenesis was observed on MS medium supplemented with 8.88 µM 6-benzylaminopurine with maximum intensity of embryogenesis (51.92 ± 0.40 a). Maximum maturation of somatic embryos (92.86 ± 0.34 a) was observed on induction medium supplemented with 0.0378 µM abscisic and treated for 21 days. Germination of somatic embryos was maximum (77.33 ± 0.58 a) on MS medium supplemented with 8.88 µM 6-benzylaminopurine. In vitro raised plantlets were hardened, acclimatized and transferred to the field. Survival frequency of plantlets was 80 % in field conditions. The genetic fidelity of in vitro regenerated plants was also evaluated and compared with mother plant using random amplified polymorphic DNA and inter simple sequence repeat. Both markers showed similarity in molecular profile of mother plant and in vitro regenerated plants.     

Ethnography through Thick and Thin

Ethnography through Thick and Thin, George E. Marcus. Princeton, NJ: Princeton University Press, 1998. 275 pp.     

Formation and deformation of patterns through diffusion

Simulating various patterns exhibited on biological forms with mathematical models has become an important supplement to theoretical biology. Models based on a certain mechanism are intended to provide explanations to the formation of a basic pattern. However, in real phenomena, among a basic pattern there always exist some difference between any two individuals. Such differences are consequences of environmental factors posed during the developmental processes. These factors, such as temperature, affect the diffusion rates of corresponding morphogenes which, in turn, alter a basic pattern to certain extent. We provide, in this paper, a quantitative characterization of this effect for a class of reaction-diffusion models.Mathematically, we study the emergence of stationary patterns and their dependence on diffusion rates for this class of models (RD-equations) with no-flux boundary conditions. The results are generalized to systems with homogeneous Dirichlet boundary conditions when the kinetic terms are odd functions. Through an analysis of the phase dynamics, we show that the deformation of stationary patterns, as the diffusion rates change, is governed by the variation of certain plane curves in the phase space. A constructive proof is given which shows explicitly how to obtain such curves.Applications of this study are illustrated with three model examples. We use these models to explain the biological implications of the mathematical features we investigated. Results from computer simulations are presented and compared with physical patterns.     

Diffusion through Narrow Pores: Movement of Ions,Water and Nonelectrolytes through Track-etched PETP Membranes

The rates at which ions (⁸⁶Rb⁺, [³H]-choline, ³⁶Cl), ³H₂O and nonelectrolytes ([¹⁴C]-urea, [¹⁴C]-glycerol, and [¹⁴C]-sugars) equilibrate across track-etched polyethyleneterephthalate (PETP) membranes (isotopic diffusion) have been measured by a `static' and a `dynamic' technique under conditions where no net flow takes place; the two techniques give essentially the same results. All tracers diffuse faster the longer the membranes are etched, consistent with an increase in pore size. Water and neutral solutes diffuse at rates that are relatively independent of ionic strength, pH or the presence of divalent cations. Diffusion of cations is decreased by high ionic strength, by reducing pH or by addition of divalent catons; diffusion of chloride is increased by these procedures. Treatment of the membrane with diazomethane to reduce the negative fixed charge decreases diffusion of cations and increases that of anions; diffusion of water and neutral solutes is unaffected by methylation except in the membranes with the narrowest pores (i.e., those etched for the shortest time), in which case diffusion is reduced. We conclude (1) that the special features of flow near a charged surface apply to ions but not to water or nonelectrolytes and (2) that calculation of absolute rates of diffusion leads to values for the radii of pores through track-etched PETP membranes that are in remarkably good agreement with measured values. Received: 14 August 1995/27 November 1995     

Electron transfer through DNA and peptides

Electrons can migrate through DNA and peptides over very long distances in a multistep hopping process. Stepping stones, which carry the charges for a short time, are the nucleotide bases of DNA or the aromatic side chains of amino acids in peptides. Chemical reactions of these charged intermediates lead to the formation but also to the repair of DNA lesions. In enzymes, long distance electron transfer can activate the binding pocket, and initiates the chemical transformation of the substrate.     

On flow through bends and branchings

Theoretical modelling of bending and branching tube flows at medium-to-high flow rates is described for current industrial and biomedical projects. This mostly uses slender-flow modelling. Much pressure loss occurs in bends, with increased swirl, large variations in velocity components and wall shear stress, skewing of the downstream motion and reduced flow rate, but the flow regime which is established shows sensitive dependence on the imposed pressure drop and entrance conditions. A small side-branch off a mother tube produces most rapid variation in pressure and velocity near the daughter entrance, this variation now being quantifiable. A multiple branching yields large flow rates and nonunique flow patterns, depending on the form of the imposed pressure differences.     

Discovery and hypothesis generation through bioinformatics

A report on the 4th European Conference on Computational Biology and the 6th Spanish Annual Meeting on Bioinformatics, Madrid, Spain, 28 September-1 October 2005.     

Electrical conduction through nerve and DNA

The aim of the present study was to analyse electric resistivity at different ambient temperatures between 300 to 20K in the frog sciatic nerve and salmon sperm DNA. When the electrical contacts were leaned just into the sciatic nerve, an increase of the sciatic nerve resistivity was observed for 240 K < T < 300 K and a rise of electrical conductivity was apparent below 240 K. This dependence is generally associated with a semiconductor behaviour. Once the sciatic nerve temperature was driven below 250K, the resistivity abruptly decreased and then at temperatures lower than 234 K, it remained constant and close to one tenth of its ambient temperature value. By contrast, when the electrical contacts were leaned into Salmon sperm DNA, the resistivity remained constant between 300K to 20K, showing a high electrical stability at low temperature. Thus, we report the existence of a new form of electric conductivity in the sciatic nerve at low ambient temperature, which in turn has many electric similarities with inorganic or organic superconductors, whereas temperature failed to alter DNA electrical properties until 20K.