Two new species of Yushania (Poaceae: Bambusoideae) from South China,with a taxonomic revision of related species

Two new species of Yushania (Poaceae, Bambusoideae, Arundinarieae) are described and illustrated from Hunan, China. Yushania longshanensis D.Z. Li & X.Y. Ye is distinguished from related species (Y. confusa, Y. angustifolia and Y. pachyclada) by having a thinner culm (0.2–0.3 cm in diameter), glabrous sheath scar, no oral setae, a large glabrous leaf blade (10–20 × 0.9–1.3 cm) and 3–4 pairs of secondary veins. Yushania stoloniforma D.Z. Li & X.Y. Ye has a distinctive scrambling habit, which differs from its putative close allies. Both of these two new species have a solitary branch at the basal nodes and can be assigned to Yushania sect. Yushania based on morphological features. Additionally, we treated Yushania gigantea T.P. Yi & L. Yang as a new synonym of Y. elevata T.P. Yi and renamed Y. microphylla T.P. Yi & L. Yang as Y. weiningensis D.Z. Li & X.Y. Ye.     

Yersinia pestis and plague: an updated view on evolution,virulence determinants,immune subversion,vaccination and diagnostics

Plague is a vector-borne disease caused by Yersinia pestis. Transmitted by fleas from rodent reservoirs, Y. pestis emerged less than 6000 years ago from an enteric bacterial ancestor through events of gene gain and genome reduction. It is a highly remarkable model for the understanding of pathogenic bacteria evolution, and a major concern for public health as highlighted by recent human outbreaks. A complex set of virulence determinants, including the Yersinia outer membrane proteins (Yops), the broad range protease Pla, pathogen-associated molecular patterns (PAMPs) and iron capture systems play critical roles in the molecular strategies that Y. pestis employs to subvert the human immune system, allowing unrestricted bacterial replication in lymph nodes (bubonic plague) and in lungs (pneumonic plague). Some of these immunogenic proteins as well as the capsular antigen F1 are exploited for diagnostic purposes, which are critical in the context of the rapid onset of death in the absence of antibiotic treatment (less than a week for bubonic plague and less than 48 h for pneumonic plague). In here, we review recent research advances on Y. pestis evolution, virulence factors function, bacterial strategies to subvert mammalian innate immune responses, vaccination and problems associated to pneumonic plague diagnosis.     

江西虾脊兰属一新变型——异钩距虾脊兰

描述了产自江西的兰科(Orchidaceae)虾脊兰属(Calanthe R. Br.)植物一新变型——异钩距虾脊兰 (Calanthe graciliflora f. jiangxiensis B. Li, L. J. Kong et B. Y. Yang),并绘制了线条图。该新变型与原变型钩距虾脊兰(C. graciliflora Hayata)的主要区别为距末端分裂为2个不等的短尖。     

云南高黎贡山西坡玉山竹属二新种简

发表了云南高黎贡山西坡玉山竹属二新种：大玉山竹（Yushania gigantea Yi et L.Yang）和片马玉山竹（Yushania pianmaensis Yi et L.Yang）。大玉山竹近似西藏玉山竹（Y.xizangensis Yi）,不同在于秆柄粗壮,直径7~12 mm,节间长达2.5 cm;秆较高大,高6~7 m,节间分枝一侧基部扁平或具短纵沟槽;小枝具（5）6（7）叶;叶鞘较长,长（2.5）3.2~4.8 cm;叶柄无毛;叶片较大,长（3.5）10~ 18（20） cm,宽(4.5)8~13（18） mm,易于区别。片马玉山竹相似大玉山竹（Y.gigantea Yi et L.Yang）,但本种秆较矮小,高2.5~4 m,直径1~1.8（2.5） cm;枝条较多而细,在秆上每节12~30枚,直径1~1.5（2） mm;箨鞘背面无毛,箨片较小,长1.5~3.5 cm,宽1~2.5 mm;小枝具叶较少,为（3）4~5枚;叶片较小,长达12.5 cm,宽达8 mm。     

Evolución de la infección fúngica invasora en los últimos 30 años

Clinical mycology is in continuous development. The appearance of new clinical guidelines has made it possible to improve the approach to opportunistic fungal infections, especially in immunosuppressed patients (oncohematological and/or transplant recipients). At the same time, the development of new diagnostic tools and new antifungals with a greater spectrum of action and fewer side effects have led to faster diagnoses and treatments that are more effective. Along with these advances, there has been a change in the epidemiology of invasive fungal infection (IFI), with the appearance of new patients (e.g., COPD, liver cirrhosis, post-influenza) and new microorganisms (Candida auris, Lomentospora prolificans, mucorales), and resistant fungi (isolates of Aspergillus resistant to azoles) which the clinician must take into account when choosing the treatment of a patient with an IFI. In this paper we will briefly review the advances in recent decades and the emerging problems.     

Metabolic engineering of Escherichia coli and Corynebacterium glutamicum for the production of l-threonine

l-threonine is an essential amino acid for mammals and as such has a wide and expanding application in industry with a fast growing market demand. The major method of production of l-threonine is microbial fermentation. To optimize l-threonine production the fundamental solution is to develop robust microbial strains with high productivity and stability. Metabolic engineering provides an effective alternative to the random mutation for strain development. In this review, the updated information on genetics and molecular mechanisms for regulation of l-threonine pathways in Escherichia coli and Corynebacterium glutamicum are summarized, including l-threonine biosynthesis, intracellular consumption and trans-membrane export. Upon such knowledge, genetically defined l-threonine producing strains have been successfully constructed, some of which have already achieved the productivity of industrial producing strains. Furthermore, strategies for strain construction are proposed and potential problems are identified and discussed. Finally, the outlook for future strategies to construct industrially advantageous strains with respect to recent advances in biology has been considered.     

Nachtrag zu ‘Hepaticae Bomeenses (Oxford University Expedition to Sarawak, 1932)’

Abstract

Recent empirical advances in bryophyte systematics have been made in the discovery and detailed study of new characters. However, theoretical considerations have not kept pace. Proper attention has not been paid to how these new characters can be used to discover relationships among groups and produce classifications. Recent cladistic studies of the relationships of the major groups of bryophytes have demonstrated the feasibility and usefulness of an approach to phylogenetic systematics derived from the works of Hennig. A Hennigian approach attempts to find the particular hierarchical level at which a given character is a homology (i.e. a synapomorphy or shared, derived character), relationships are established by searching for congruent patterns of homologies, and the resulting hierarchical scheme is used as the basis for a classification. Such an approach provides a rigorous and explicit logic for investigating phylogeny and recognizing natural, historically discrete taxa. The theoretical advantages of a Hennigian approach are discussed and illustrated by examining the congruence of new characters data with preliminary cladograms of the major bryophyte groups.     

Further new species of the plant bug genus Campylomma Reuter from the Oriental Region (Heteroptera: Miridae: Phylinae: Nasocorini)

The fauna of the nasocorine plant bug genus Campylomma Reuter from the Oriental Region, including subtropical Japanese Ryukyu Islands (Okinawa Island of Southwest Islands-group) and Taiwan is updated. Three new species are herein described, C. astica n. sp. (from Okinawa and Taoyuan, Taiwan), C. hibiscicola n. sp. (Bangkok, Thailand) and C. nanrenana n. sp. (Pingtung, Taiwan). Of these, C. astica and C. hibiscicola, were observed to have cryptic habitat-preference, inhabiting bracts, stipules or flower buds of the sea (or coastal) hibiscus, Hibiscus tiliaceus (L.) (Malvaceae), planted for landscaping at urbanized zones. An updated checklist of the 22 Oriental Campylomma species is provided.     

Mitogenomic phylogeny of Typhlocybinae (Hemiptera: Cicadellidae) reveals homoplasy in tribal diagnostic morphological traits

The subfamily Typhlocybinae is a ubiquitous, highly diverse group of mostly tiny, delicate leafhoppers. The tribal classification has long been controversial and phylogenetic methods have only recently begun to test the phylogenetic status and relationships of tribes. To shed light on the evolution of Typhlocybinae, we performed phylogenetic analyses based on 28 newly sequenced and 19 previously sequenced mitochondrial genomes representing all currently recognized tribes. The results support the monophyly of the subfamily and its sister‐group relationship to Mileewinae. The tribe Zyginellini is polyphyletic with some included genera derived independently within Typhlocybini. Ancestral character state reconstruction suggests that some morphological characters traditionally considered important for diagnosing tribes (presence/absence of ocelli, development of hind wing submarginal vein) are homoplastic. Divergence time estimates indicate that the subfamily arose during the Middle Cretaceous and that the extant tribes arose during the Late Cretaceous. Phylogenetic results support establishment of a new genus, Subtilissimia Yan & Yang gen. nov., with two new species, Subtilissimia fulva Yan & Yang sp. nov. and Subtilissimia pellicula Yan & Yang sp. nov.; but indicate that two previously recognized species of Farynala distinguished only by the direction of curvature of the processes of the aedeagus are synonyms, that is, Farynala dextra Yan & Yang, 2017 equals Farynala sinistra Yan & Yang, 2017 syn. nov. A key to tribes of Typhlocybinae is provided.     

Mechanisms of contractile-ring assembly in fission yeast and beyond

Most eukaryotes including fungi, amoebas, and animal cells assemble an actin/myosin-based contractile ring during cytokinesis. The majority of proteins implied in ring formation, maturation, and constriction are evolutionarily conserved, suggesting that common mechanisms exist among these divergent eukaryotes. Here, we review the recent advances in positioning and assembly of the actomyosin ring in the fission yeast Schizosaccharomyces pombe, the budding yeast Saccharomyces cerevisiae, and animal cells. In particular, major findings have been made recently in understanding ring formation in genetically tractable S. pombe, revealing a dynamic and robust search, capture, pull, and release mechanism.     

The Structure of Plant Cell Walls: VI. A Survey of the Walls of Suspension-cultured Monocots

The primary cell walls of six suspension-cultured monocots and of a single suspension-cultured gymnosperm have been investigated with the following results: (a) the compositions of all six monocot cell walls are remarkably similar, despite the fact that the cell cultures were derived from diverse tissues; (b) the cell walls of suspension-cultured monocots differ substantially from those of suspension-cultured dicots and from the suspension-cultured gymnosperm; (c) an arabinoxylan is a major component (40% or more by weight) of monocot primary cell walls; (d) mixed β-1,3; β-1,4-glucans were found only in the cell wall preparations of rye grass endosperm cells, and not in the cell walls of any of the other five monocot cell cultures nor in the walls of suspension-cultured Douglas fir cells; (e) the monocot primary cell walls studied contain from 9 to 14% cellulose, 7 to 18% uronic acids, and 7 to 17% protein; (f) hydroxyproline accounts for less than 0.2% of the cell walls of monocots. Similar data on the soluble extracellular polysaccharides secreted by these cells are included.     

梵净山景天——景天属一新种

报道了产于中国贵州梵净山景天属一新种——梵净山景天（Sedum fanjingshanensis C.D.Yang et X.Y.Wang）。新种与单花景天（S.correpta Fröderström）相似,但雄蕊10枚,排列成2轮而不同。该种与小山飘风（S.filipes Hemsley）亦相似,但花单生于枝顶而明显不同。     

Middle Albian gymnosperms from the Río Martín Valley (Teruel,Spain)

The fossil-rich site within the Albian Escucha Formation in the Oliete Sub-basin, located in the Northeast of Spain, has provided a great abundance of impressions, including leave remains and seed cones of Coniferales (Sphenolepis kurriana, Sphenolepis sternbergiana, Elatides curvifolia, Brachyphyllum sp. and Geinitzia sp. cf. G. rigida), leaves of Caytoniales (Sagenopteris elliptica), Ginkgoales (Ginkgoites pluripartita, and Sphenobaiera sp. cf. S. longifolia), Bennettitales (Ptilophyllum sp. cf. P. pecten and aff. Zamites sp.), Cycadales (Nilssonia tenuinervis and Ctenozamites with entire and denticulate pinnae margins), Czekanowskiales, and reproductive structures of Gnetales. The gymnosperm remains are fairly abundant in the upper member, built up of sediments deposited in fluvial and swamp environments without marine influence. The different gymnosperm associations in this outcrop indicate a wide variety of environments in a subtropical climate, and a mixture of North American and European taxa in the Iberian plate during the Middle Albian.     

Fungal (-like) biocontrol organisms in tomato disease control

The worldwide important crop tomato is attacked by various pathogens, for which management is still primarily reliant on fungicides despite increasing concerns and constraints on their use. Other approaches are investigated, including the use of biocontrol organisms to manage tomato diseases. In this review we discuss and compare the interaction of major biocontrol fungi (BCF) with tomato, including the endophytic arbuscular mycorrhizal fungi and Piriformospora indica, the free-living opportunistic symbionts Trichoderma spp. and non-pathogenic Fusarium oxysporum, as well as the oomycete Pythium oligandrum. We cover recent advances that have been made in unraveling biocontrol modes of action against the most important tomato pathogens, encompassing direct effects of the BCF on pathogens and their indirect effects through the plant, with a main focus on induced systemic resistance. It is an exciting era for the study of biocontrol tripartite interactions, with the emergence of next-generation sequencing tools and the higher pace at which new genomes are being sequenced nowadays, as was recently also achieved for tomato. In addition, plant pathology and biocontrol research domains are increasingly reaching out to each other, because of the parallels that we are only beginning to discover between the interactions of beneficial and detrimental micro-organisms with a plant. Considering the enormous technological possibilities at hand today, this seems a timely opportunity to review the most recent advances in this field and to anticipate to what is ahead of us, discussing breakthroughs expected in our understanding of biocontrol interactions and remaining hurdles on the way to reach them.     

Evolution of the bHLH Genes Involved in Stomatal Development: Implications for the Expansion of Developmental Complexity of Stomata in Land Plants

Stomata play significant roles in plant evolution. A trio of closely related basic Helix-Loop-Helix (bHLH) subgroup Ia genes, SPCH, MUTE and FAMA, mediate sequential steps of stomatal development, and their functions may be conserved in land plants. However, the evolutionary history of the putative SPCH/MUTE/FAMA genes is still greatly controversial, especially the phylogenetic positions of the bHLH Ia members from basal land plants. To better understand the evolutionary pattern and functional diversity of the bHLH genes involved in stomatal development, we made a comprehensive evolutionary analysis of the homologous genes from 54 species representing the major lineages of green plants. The phylogenetic analysis indicated: (1) All bHLH Ia genes from the two basal land plants Physcomitrella and Selaginella were closely related to the FAMA genes of seed plants; and (2) the gymnosperm ‘SPCH’ genes were sister to a clade comprising the angiosperm SPCH and MUTE genes, while the FAMA genes of gymnosperms and angiosperms had a sister relationship. The revealed phylogenetic relationships are also supported by the distribution of gene structures and previous functional studies. Therefore, we deduce that the function of FAMA might be ancestral in the bHLH Ia subgroup. In addition, the gymnosperm “SPCH” genes may represent an ancestral state and have a dual function of SPCH and MUTE, two genes that could have originated from a duplication event in the common ancestor of angiosperms. Moreover, in angiosperms, SPCHs have experienced more duplications and harbor more copies than MUTEs and FAMAs, which, together with variation of the stomatal development in the entry division, implies that SPCH might have contributed greatly to the diversity of stomatal development. Based on the above, we proposed a model for the correlation between the evolution of stomatal development and the genes involved in this developmental process in land plants.     

MLVA Based Classification of Mycobacterium tuberculosis Complex Lineages for a Robust Phylogeographic Snapshot of Its Worldwide Molecular Diversity

Multiple-locus variable-number tandem repeat analysis (MLVA) is useful to establish transmission routes and sources of infections for various microorganisms including Mycobacterium tuberculosis complex (MTC). The recently released SITVITWEB database contains 12-loci Mycobacterial Interspersed Repetitive Units – Variable Number of Tandem DNA Repeats (MIRU-VNTR) profiles and spoligotype patterns for thousands of MTC strains; it uses MIRU International Types (MIT) and Spoligotype International Types (SIT) to designate clustered patterns worldwide. Considering existing doubts on the ability of spoligotyping alone to reveal exact phylogenetic relationships between MTC strains, we developed a MLVA based classification for MTC genotypic lineages. We studied 6 different subsets of MTC isolates encompassing 7793 strains worldwide. Minimum spanning trees (MST) were constructed to identify major lineages, and the most common representative located as a central node was taken as the prototype defining different phylogenetic groups. A total of 7 major lineages with their respective prototypes were identified: Indo-Oceanic/MIT57, East Asian and African Indian/MIT17, Euro American/MIT116, West African-I/MIT934, West African-II/MIT664, M. bovis/MIT49, M.canettii/MIT60. Further MST subdivision identified an additional 34 sublineage MIT prototypes. The phylogenetic relationships among the 37 newly defined MIRU-VNTR lineages were inferred using a classification algorithm based on a bayesian approach. This information was used to construct an updated phylogenetic and phylogeographic snapshot of worldwide MTC diversity studied both at the regional, sub-regional, and country level according to the United Nations specifications. We also looked for IS6110 insertional events that are known to modify the results of the spoligotyping in specific circumstances, and showed that a fair portion of convergence leading to the currently observed bias in phylogenetic classification of strains may be traced back to the presence of IS6110. These results shed new light on the evolutionary history of the pathogen in relation to the history of peopling and human migration.