小麦叶片类囊体膜蛋白复合体的分离和分析技术研究

膜蛋白复合体在生命活动中执行着重要的生物化学功能,具有重要的研究意义,但由于其低表达和高度疏水的特点,完整状态和低丰度的膜蛋白复合体的分离分析仍是一大挑战.首先,采用蓝绿温和胶非变性电泳作为第一维分离技术,大量分离制备叶绿体类囊体膜蛋白复合物;其次,采用电洗脱方法差异富集第一维电泳分离到的各种蛋白复合体;最后,采用SDS-PAGE作为第二维分离技术,分析差异富集的不同种蛋白复合体的亚基构成.研究结果表明,利用这种分离分析模式,能有效地富集膜蛋白复合体尤其是低丰度膜蛋白复合体,明显提高第二维分离分析的分辨率和蛋白覆盖率.     

低叶绿素b水稻突变体类囊体膜的比较蛋白质组学

采用蓝绿温和胶凝胶电泳(blue-nativepolyacrylamidegel-electrophoresis,BN-PAGE),以及改进的第二向SDS-PAGE分离了水稻低叶绿素b突变体ZH249-Y和野生型ZH249-W类囊体膜蛋白复合物,系统比较了突变体和野生型各复合物亚基的表达差异.结果显示,第一向BN-PAGE分离了PSⅠ-LHCⅠ、LHCⅠ缺失的PSⅠ、ATP合成酶、细胞色素b6f、CP43缺失的PSⅡ及LHCⅡ六种复合物.上述各复合物经第二相SDS-Urea-PAGE分离后,利用胶内酶解,高效液相层析分离肽段,电喷雾串联质谱鉴定了复合物的亚基.结合免疫印迹研究,证明和野生型相比,突变体光系统Ⅱ捕光天线复合体的表达量适度下降,但光系统Ⅰ捕光天线破坏严重,同时光系统Ⅱ核心蛋白和ATP合成酶的表达量上升.研究结果对揭示低叶绿素b水稻突变体较高光化学效率和光稳定性的分子基础提供了线索,同时也表明,改进的BN/SDS-PAGE双向电泳不仅可以有效地分离膜蛋白复合物及亚基,也可以进行不同生理条件下,或野生型和突变体之间膜蛋白质组的比较研究.     

一种用于色素蛋白分离的新凝胶系统

用混合去垢剂增溶低离子强度条件下的温和电泳方法,对菠菜叶绿体类囊体膜和不同PSⅡ制剂进行了色素蛋白复合体组成的分析．并结合SDS聚丙烯酰胺凝胶电泳和吸收光谱对部分色素蛋白复合体进行了鉴定．此法简便、迅速、游离色素少．     

两种电泳系统分离裙带菜色素-蛋白复合物的比较

裙带菜的类囊体膜经过去污剂癸基-N-甲基匍萄糖胺增溶,采用SDS-PAGE分离技术,在Tris-Gly和Tris-硼酸两种电泳系统中分离其色素-蛋白质复合物,并比较其复合物的光谱特性。结果表明:采用Tris-Gly电泳分离系统从裙带菜中分离到8种色食-蛋白质复合物,分别是CP Ia、CPI、LHC₁、CPa、LHC₂、LHC₃、LHC₄和LHC₅。在Tris-硼酸电泳分离系统中共分离到5种色素-蛋白质复合物,分别是CPI、CPa、LHC₁、LHC₂、LHC₃。吸收光谱和荧光光谱的测定结果表明,两种电泳系统中分离的相对应条带的光谱特性基本相近。     

蓝色温和凝胶双向电泳用于分析嗜盐菌质膜蛋白复合物

为了揭示细胞对盐胁迫渗透适应的分子机制,以新鉴定的中度嗜盐芽孢杆菌Bacillussp.I121为实验材料,分析了该嗜盐菌质膜上的盐胁迫响应蛋白.为此,通过蓝色温和凝胶双向电泳(BN/SDS-PAGE)对纯化的质膜组分进行了差异蛋白质组学研究.经MALDI-TOF/TOF质谱分析,鉴定了8个盐胁迫响应蛋白.盐胁迫诱导上调表达的蛋白质包括ABC型转运蛋白、3-磷酸甘油透性酶、嘧啶核苷转运蛋白和甲酸脱氢酶,下调表达的蛋白质包括琥珀酸脱氢酶(succinate dehydrogenase)铁硫亚基、黄素蛋白亚基、细胞色素b556亚基以及分子伴侣DnaJ的同源蛋白;酶活力测定结果表明胁迫条件下上述蛋白质的活性变化与表达量变化相一致.这些蛋白质中绝大多数属于高度疏水的跨膜蛋白,主要负责物质跨膜运输及能量代谢.上述结果表明,中度嗜盐菌Bacillus sp.I121可通过加快跨膜物质运输,同时抑制TCA循环完成盐胁迫条件下相容性溶质脯氨酸和四氢嘧啶的合成与积累.也进一步证明,蓝色温和凝胶双向电泳不仅可用于线粒体、叶绿体中蛋白质复合物的分析,也同样适用于细胞质膜上高度疏水蛋白复合物的比较研究.     

莱茵衣藻叶绿素暗合成突变体y-1类囊体膜形成过程中PSI核心色素蛋白复合物CPI的积累

主要运用温和电泳和蛋白印迹技术检测了暗培养4天脱绿的衣藻y-1细胞以及转绿后y-1细胞光系统Ⅰ的核心色素蛋白复合物(CPⅠ)和核心叶绿素脱辅基蛋白PsaA/B。暗培养衣藻细胞中,PSⅠ中主要的色素蛋白复合物-CPⅠ完全缺失,然而核心多肽PsaA/B仍有一定量的积累,同时检测不到P700的含量。当脱绿的y-1细胞转移至光照下(50 μmol Photons/m2·s)时,伴随着叶绿素的合成,色素蛋白复合物CPⅠ和PsaA/B脱辅基蛋白的合成也逐渐达到正常水平,叶绿素和PsaA/B蛋白进行组装并形成了具有功能的PSⅠ反应中心, 同时P700的含量也得到恢复。实验证明了光照是形成光合系统色素蛋白复合物的重要前提,叶绿素的合成能够稳定并促进PsaA/B的积累。同时发现,叶绿体基因组编码的PSⅠ核心多肽PsaA/B能够在暗条件下合成,而在高等植物如豌豆、大麦的黄化体中不能合成PsaA/B蛋白,这可能是由于在脱绿的y-1细胞中叶绿体的量并没有发生明显的减少,且仍具有相对完整的大小和形状,而在叶绿体的被膜上具有许多参与光合作用的酶系统。     

一种改进的蛋白质超薄凝胶电泳方法

介绍了一种将聚丙烯酰胺凝胶固定在电泳夹板上的蛋白质电泳方法.通过此方法蛋白质电泳可以在0.4 mm厚的聚丙烯酰胺凝胶上进行.实验证明,经此方法处理的玻板结合凝胶非常牢固,在电泳后的所有处理步骤中都不会发生凝胶脱落现象.     

UV-B辐射增强对土生对齿藓(Didymodon vinealis)结皮生理代谢及光系统相关蛋白表达的影响

以中国科学院沙坡头沙漠试验研究站人工固沙植被区的土生对齿藓(Didymodon vinealis(Brid.) Zand.)结皮为试验材料,通过室内模拟UV-B 4个辐射强度[2.75(对照)、3.08、3.25和3.41 W·m-2]的处理,研究了UV-B辐射增强对土生对齿藓结皮生理代谢及光系统相关蛋白表达的影响.结果表明:随着UV-B辐射强度增加,丙二醛(MDA)含量呈增加趋势;叶绿素a荧光诱导动力学参数、可溶性蛋白质及类囊体膜蛋白表达量随着辐射强度的增加而降低,且与辐射强度呈反比.模拟UV-B辐射增强促进了土生对齿藓结皮活性氧的代谢速率,导致了膜脂过氧化,可溶性蛋白质含量减少,进而降低PSII反应中心活性,最终导致光合作用能力下降,这一结果对于进一步理解生物土壤结皮对UV-B辐射的响应机制,探索应用生物土壤结皮进行荒漠化治理具有重要的理论与实践意义.     

利用热稳定蛋白特异条带鉴别籼粳稻的方法研究

以85份栽培稻为材料,利用SDS-聚丙烯酰胺凝胶电泳和蛋白免疫印迹技术分析籼稻和粳稻热稳定蛋白的表达差异.探讨利用特异蛋白来建立籼粳稻的鉴别方法.结果表明,在籼粳稻品种之间存在热稳定蛋白的差异表达,尤其在分子量约42～47kD范围.其中45.2kD条带(Band I)和46.5 kD(Band Ⅱ)条带为典型粳稻特异蛋白(Os03g0168100)的标志带,42.0kD条带(Band Ⅲ)为典型籼稻特异蛋白(OsI_10172)的标志带.以这3条带作为鏊别方法,并与程氏指数法进行比较,典型籼稻和粳稻的一致度分别为80.0%和86.4%,表明热稳定蛋白标志带法在一定程度上可用于鉴别典型的籼稻和粳稻.     

艾氏腹水癌患鼠腹水中一种高分子量DNA结合蛋白的分离

 本文利用免疫吸收法和免疫亲和层析法,从艾氏腹水癌患鼠腹水DNA结合蛋白中,分离得到了一种高分子量DNA结合蛋白。在免疫双扩散反应中,它与抗艾氏腹水癌患鼠血清DNA结合蛋白的兎抗血清反应形成一条沉淀线,但与正常小鼠血清DNA结合蛋白的兎抗血清不形成沉淀线。该DNA结合蛋白样品用2-巯基乙醇还原后,经SDC-PAGE分析,测得其分子量约为41000。     

Protein composition of Cucurbita maxima and C. moschata seeds

Seeds of Cucurbita maxima, C. moschata and their interspecific hybrids were used to evaluate the intrapopulational and interpopulational variation of their protein composition. Three immunoprecipitating systems common to all the studied samples were detected by the Ouchterlony technique. Fourteen protein bands were identified by polyacrylamide gel electrophoresis (PAGE) whereas 23 bands were identified by sodiumdodecylsulfate (SDS)-PAGE. Using Western blotting (WB) also 23 bands were detected. The Jaccard's index of similarity calculated from SDS-PAGE and WB varied between 91 and 100 % for all the compared pairs of samples. These results demonstrate a high uniformity in the protein composition of all the samples and do not allow for their clear characterization.     

应激心肌细胞蛋白质组双向凝胶电泳分析

采用双向凝胶电泳技术和计算机辅助的图像分析方法 ,对去甲肾上腺素诱导的应激心肌细胞与正常心肌细胞蛋白质进行分离和比较分析 .正常心肌细胞可分离 12 32± 5 6个蛋白点 ,蛋白点匹配率为 83 3%± 1 0 %.有 11种蛋白质在NE应激后发生了明显和稳定的质和量的改变 (P <0 0 5 ) ,其中 6种 (Mr pI :4 9 7kD 7 8,38 3kD 5 9,37 1kD 6 6 ,2 9 3kD 7 4 ,18 7kD 6 1,18 5kD 7 7)在应激后表达降低 ,4种 (Mr pI:4 7 6kD 5 5 ,31 9kD 4 4 ,2 6 6kD 4 6 ,33 2kD 8 1)在应激后表达增高 ,1种 (Mr pI:19 4kD 6 9)只在应激后发生表达 .这些差异表达的蛋白质可能参与了心血管应激反应乃至应激损伤发生的过程 .     

用于双向凝胶电泳分析的奶牛乳清蛋白样品制备方法的比较

为建立适用于双向凝胶电泳分析的奶牛乳清蛋白的制备方法,分别比较了直接裂解法、三氯乙酸-丙酮法,Trizol法和2-D clean up kit法对奶牛乳清蛋白提取效率和双向凝胶电泳图谱的影响.用2-D Quant Kit试剂盒测定蛋白浓度,分别用十二烷基磺酸钠 聚丙烯酰胺凝胶电泳和双向凝胶电泳进行奶牛乳清蛋白的分离.蛋白定量结果表明,2-D clean up kit法产率最高,直接裂解法、三氯乙酸-丙酮法次之,trizol法产率最低;十二烷基磺酸钠-聚丙烯酰胺凝胶电泳结果表明,2- D clean up kit法提取的蛋白质量最高;双向电泳图谱分析表明,2-D clean up kit法得到的蛋白图谱与另外3种方法相比,检测到的蛋白点最多,图谱背景清晰,分辨率最高.结果提示,2-D clean-up法相对最适合于双向凝胶电泳分析奶牛乳清蛋白样品的制备,尤其对一些低丰度高分子量蛋白的分离效果较为明显.     

CN-GELFrEE - Clear Native Gel-eluted Liquid Fraction Entrapment Electrophoresis

Protein complexes perform an array of crucial cellular functions. Elucidating their non-covalent interactions and dynamics is paramount for understanding the role of complexes in biological systems. While the direct characterization of biomolecular assemblies has become increasingly important in recent years, native fractionation techniques that are compatible with downstream analysis techniques, including mass spectrometry, are necessary to further expand these studies. Nevertheless, the field lacks a high-throughput, wide-range, high-recovery separation method for native protein assemblies. Here, we present clear native gel-eluted liquid fraction entrapment electrophoresis (CN-GELFrEE), which is a novel separation modality for non-covalent protein assemblies. CN-GELFrEE separation performance was demonstrated by fractionating complexes extracted from mouse heart. Fractions were collected over 2 hr and displayed discrete bands ranging from ~30 to 500 kDa. A consistent pattern of increasing molecular weight bandwidths was observed, each ranging ~100 kDa. Further, subsequent reanalysis of native fractions via SDS-PAGE showed molecular-weight shifts consistent with the denaturation of protein complexes. Therefore, CN-GELFrEE was proved to offer the ability to perform high-resolution and high-recovery native separations on protein complexes from a large molecular weight range, providing fractions that are compatible with downstream protein analyses.     

Glycine Receptor Complex Analysis Using Immunoprecipitation‐Blue Native Gel Electrophoresis‐Mass Spectrometry

The pentameric glycine receptor (GlyR), comprising the α1 and β subunits, is a major inhibitory ionotropic receptor in brainstem and spinal cord. GlyRs interact with gephyrin (GPHN), a scaffold protein that anchors the GlyR in the plasma membrane and enables it to form clusters in glycinergic postsynapses. Using an interaction proteomics approach, evidence of the ArfGEFs IQ motif and Sec7 domain 3 (IQSEC3) and IQ motif and Sec7 domain 2 (IQSEC2) as two novel synaptic proteins interacting with GlyR complexes is provided. When the affinity‐isolated GlyR complexes are fractionated by blue native gel electrophoresis and characterized by mass spectrometry, GlyR α1β‐GPHN appears as the most abundant complex with a molecular weight of ≈1 MDa, and GlyR α1β‐GPHN‐IQSEC3 as a minor protein complex of ≈1.2 MDa. A third GlyR α1β‐GPHN‐IQSEC2 complex exists at the lowest amount with a mass similar to the IQSEC3 containing complex. Using yeast two‐hybrid it is demonstrated that IQSEC3 interacts with the GlyR complex by binding to the GPHN G domain at the N‐terminal of the IQSEC3 IQ‐like domain. The data provide direct evidence of the interaction of IQSEC3 with GlyR‐GPHN complexes, underscoring a potential role of these ArfGEFs in the function of glycinergic synapses.     

SDS-PAGE分析肝癌细胞和正常肝细胞膜蛋白

目的:采用SDS-聚丙烯酰胺凝胶电泳(SDS-PAGE)方法获得肝癌细胞株HepG2和人正常肝细胞株L-02蛋白质表达谱,期待找到与肝癌细胞相关的差异蛋白。方法:体外培养肝癌细胞株HepG2和正常肝细胞株L-02,分离提取细胞膜蛋白,用SDS-PAGE分析细胞膜蛋白。结果:2种细胞膜蛋白的疏水相和亲水相蛋白区带位置基本相同,但肝癌细胞株HepG2膜蛋白在相对分子质量66×103处有较清晰的异常蛋白区带。结论:肝癌细胞HepG2除了具有与正常肝细胞相同的组成物质外,还有自己独特的蛋白质表达谱,这一实验可为癌症的研究提供一定的参考。     

基于非变性聚丙烯酰胺凝胶电泳的菜心SCoT分析

以菜心(Brassica rapa var. parachinensis)抗小菜蛾品种Caixin65和感小菜蛾品种Caixin69及6份F2株系为材料,利用非变性聚丙烯酰胺凝胶电泳检测菜心抗虫株系的SCoT多态性,同时进行SCoT多态性的非变性聚丙烯酰胺凝胶电泳检测效率、遗传多样性分析和差异条带克隆分析。结果表明,非变性聚丙烯酰胺凝胶能检测出亲本与子代间的SCoT多态性和遗传多样性变化,条带数量较多且清晰,提高了SCoT标记检测效率。选取亲本的10条非变性聚丙烯酰胺凝胶差异片段克隆测序,获得感虫序列4条、抗虫序列6条,GENSCAN预测其中8条具有启动子、终止子、阅读框等基因结构序列。同源性检索分析表明,感虫序列分别与泛素羧基末端水解酶mRNA序列、大白菜克隆序列、白菜线粒体丙酮酸载体蛋白序列、甘蓝基因组编码未知蛋白的HDEM序列同源,抗虫序列分别与白菜RNA假尿苷合酶4线粒体mRNA序列、京水菜线粒体DNA序列、白菜未知蛋白mRNA序列、白菜4-香豆酸：辅酶A连接酶mRNA序列、大白菜克隆序列、哈茨木霉mRNA序列同源。本研究提高了SCoT标记清晰度、遗传多样性检测水平和差异片段克隆的精准性,使得SCoT成为批量克隆差异片段的高效工具,有助于挖掘SCoT功能性标记信息,开展初步的功能基因组学研究,提高优异株系筛选鉴定效率,加快育种进程,为菜心抗虫性机制的进一步研究提供理论基础。     

Precursor binding to an 880-kDa Toc complex as an early step during active import of protein into chloroplasts

The import of protein into chloroplasts is mediated by translocon components located in the chloroplast outer (the Toc proteins) and inner (the Tic proteins) envelope membranes. To identify intermediate steps during active import, we used sucrose density gradient centrifugation and blue-native polyacrylamide gel electrophoresis (BN-PAGE) to identify complexes of translocon components associated with precursor proteins under active import conditions instead of arrested binding conditions. Importing precursor proteins in solubilized chloroplast membranes formed a two-peak distribution in the sucrose density gradient. The heavier peak was in a similar position as the previously reported Tic/Toc supercomplex and was too large to be analyzed by BN-PAGE. The BN-PAGE analyses of the lighter peak revealed that precursors accumulated in at least two complexes. The first complex migrated at a position close to the ferritin dimer (approximately 880 kDa) and contained only the Toc components. Kinetic analyses suggested that this Toc complex represented an earlier step in the import process than the Tic/Toc supercomplex. The second complex in the lighter peak migrated at the position of the ferritin trimer (approximately 1320 kDa). It contained, in addition to the Toc components, Tic110, Hsp93, and an hsp70 homolog, but not Tic40. Two different precursor proteins were shown to associate with the same complexes. Processed mature proteins first appeared in the membranes at the same fractions as the Tic/Toc supercomplex, suggesting that processing of transit peptides occurs while precursors are still associated with the supercomplex.