Grazing as a mediator for maintenance of offspring diversity: Sexual and clonal recruitment in alpine grassland communities

To understand the effects of grazing on grassland plants sexual and clonal recruitment, we conducted a demographic field investigation of species recruitment along a grazing gradient in the Tibetan alpine grassland. Grazing intensity had significant effects on quantity and diversity of sexual and clonal recruitment. Sexual recruitment increased significantly, but clonal offspring production decreased significantly with increased grazing intensity. Grazing intensity had different, significant effects on offspring recruitment of the various functional groups in the community, grasses (GG), sedges (SG), legumes (LG) and forbs (FG). Higher grazing intensity reduced offspring recruitment of GG and SG; it increased offspring recruitment of LG and FG. Seedlings were significantly more abundant in lightly grazed, moderately grazed and heavily grazed meadows than in non-grazed grasslands. Offspring diversity from sexual recruitment was significantly higher than that from clonal recruitment in grazed than in non-grazed grasslands. Our studies indicate that moderate grazing had positive effects on seedling recruitment and offspring diversity, but heavy gazing may alter community succession by affecting recruitment patterns among the four plant functional groups.     

克隆植物的无性与有性繁殖对策

许多植物同时具有克隆生长与有性繁殖,两种繁殖方式间的平衡在不同物种间以及同一物种内不同种群间变化很大。旺盛的克隆生长可能会从多方面影响生活史进化。首先,许多克隆植物的有性繁殖与更新程度都很低,甚至有一些植物由于克隆生长而几乎完全放弃了有性过程,从而影响到克隆植物对局域环境的适应和地理范围进化。其次,克隆生长增大花展示进而增加了对传粉者的吸引,同时也增加了同株异花授粉的风险,而同株异花授粉往往会导致植物雄性和雌性适合度的下降。因此,克隆植物的空间结构与交配方式间可能存在着协同进化关系。最后,克隆生长与有性繁殖间可能存在着权衡关系:对克隆生长的资源投入将会减少对有性繁殖的资源投入。这种权衡关系可能是由环境条件、竞争力度、植物寿命和遗传等因素决定的。如果不同的繁殖方式是植物在不同环境下采取的适应性对策,那么我们可以预期:在波动和竞争力度大的生境中,植物应将大部分的繁殖资源分配给有性繁殖;而在相对稳定的环境中,克隆繁殖应该占据优势地位。但是自然选择对两种繁殖方式的选择结果是什么,以及控制这两种方式间平衡的生态和遗传因子究竟有哪些,到底是克隆生长单向地影响了植物的有性繁殖,还是与有性过程相伴随的选择压力同时塑造了植物的克隆习性?目前尚不清楚。同时从无性与有性繁殖两个方面综合考察克隆植物的繁殖对策是今后亟待加强的工作。     

Standardizing methods to address clonality in population studies

Although clonal species are dominant in many habitats, from unicellular organisms to plants and animals, ecological and particularly evolutionary studies on clonal species have been strongly limited by the difficulty in assessing the number, size and longevity of genetic individuals within a population. The development of molecular markers has allowed progress in this area, and although allozymes remain of limited use due to their typically low level of polymorphism, more polymorphic markers have been discovered during the last decades, supplying powerful tools to overcome the problem of clonality assessment. However, population genetics studies on clonal organisms lack a standardized framework to assess clonality, and to adapt conventional data analyses to account for the potential bias due to the possible replication of the same individuals in the sampling. Moreover, existing studies used a variety of indices to describe clonal diversity and structure such that comparison among studies is difficult at best. We emphasize the need for standardizing studies on clonal organisms, and particularly on clonal plants, in order to clarify the way clonality is taken into account in sampling designs and data analysis, and to allow further comparison of results reported in distinct studies. In order to provide a first step towards a standardized framework to address clonality in population studies, we review, on the basis of a thorough revision of the literature on population structure of clonal plants and of a complementary revision on other clonal organisms, the indices and statistics used so far to estimate genotypic or clonal diversity and to describe clonal structure in plants. We examine their advantages and weaknesses as well as various conceptual issues associated with statistical analyses of population genetics data on clonal organisms. We do so by testing them on results from simulations, as well as on two empirical data sets of microsatellites of the seagrasses Posidonia oceanica and Cymodocea nodosa. Finally, we also propose a selection of new indices and methods to estimate clonal diversity and describe clonal structure in a way that should facilitate comparison between future studies on clonal plants, most of which may be of interest for clonal organisms in general.     

Clonal diversity and structure within a population of the pondweed Potamogeton pectinatus foraged by Bewick's swans

Clonal diversity within plant populations is affected by factors that influence genet (clone) survival and seed recruitment, such as resource availability, disturbance, seed dispersal mechanism, propagule predation and the age of the population. Here we studied a population of Potamogeton pectinatus, a pseudo-annual aquatic macrophyte. Within populations reproduction appears to be mainly asexually through subterranean propagules (tubers), while recruitment via seeds is believed to be relatively unimportant. RAPD markers were used to analyse clonal diversity and genetic variation within the population. Ninety-seven genets were identified among 128 samples taken from eight plots. The proportion of distinguishable genets (0.76) and Simpson's diversity index (0.99) exhibited high levels of clonal diversity compared to other clonal plants. According to an analysis of molecular variance (amova) most genetic variation occurred between individuals within plots (93-97%) rather than between plots (8-3%). These results imply that sexual reproduction plays an unexpectedly important role within the population. Nevertheless, autocorrelation statistics revealed a spatial genetic structure resulting from clonal growth. In contrast to genetic variation, clonal diversity was affected by several ecological factors. Water depth and silt content had direct negative effects on clonal diversity. Tuber predation by Bewick's swans had an unexpected indirect negative effect on clonal diversity through reducing the tuber-bank biomass in spring, which on its turn was positively correlated to clonal diversity. The disturbance by swans, therefore, did not enhance seed recruitment and thus clonal diversity; on the contrary, heavily foraged areas are probably more prone to stochastic loss of genets leading to reduced clonal diversity.     

The loss of sex in clonal plants

Most plants combine sexual and clonal reproduction, and the balance between the two may vary widely between and within species. There are many anecdotal reports of plants that appear to have abandoned sex for clonal reproduction, yet few studies have quantified the degree of sexual variation in clonal plants and fewer still have determined the underlying ecological and/or genetic factors. Recent empirical work has shown that some clonal plants exhibit very wide variation in sexual reproduction that translates into striking variation in genotypic diversity and differentiation of natural populations. Reduced sexual reproduction may be particularly common at the geographical margins of species' ranges. Although seed production and sexual recruitment may often be limited by biotic and abiotic aspects of the environment in marginal populations, genetic factors, including changes in ploidy and sterility mutations, may also play a significant role in causing reduced sexual fertility. Moreover, environmental suppression of sexual recruitment may facilitate the evolution of genetic sterility because natural selection no longer strongly maintains the many traits involved in sex. In addition to the accumulation of neutral sterility mutations in highly clonal populations, the evolution of genetic infertility may be facilitated if sterility is associated with enhanced vegetative growth, clonal propagation or survival through either resource reallocation or pleiotropy. However, there are almost no experimental data with which to distinguish among these possibilities. Ultimately, wide variation in genotypic diversity and gene flow associated with the loss of sex may constrain local adaptation and the evolution of the geographical range limit in clonal plants.     

PATTERNS OF GENOTYPIC DIVERSITY IN CLONAL PLANT SPECIES

We compile and analyze data on the population genetic structure of broad-sense clonal plant populations where sexual recruitment is rare or absent. The data from 27 studies show a common theme: multiclonal populations of intermediate diversity and evenness tend to be the rule, most clones are restricted to one or a few populations, and widespread clones are exceptional. While a few studies have demonstrated that ecological differences among sympatric clones do occur, more experimental and theoretical studies are necessary to determine the role of selection and other evolutionary forces in maintaining clonal polymorphism.     

Regeneration of a dominant Mediterranean dwarf-shrub after fire

Abstract. The regeneration after fire of the dominant east Mediterranean dwarf-shrub Sarcopoterium spinosum was studied under various habitat and geographic conditions in northern Israel, northern Crete and the Aegean coast of Turkey. Age structures of regenerating stands were determined 3–9 yr after fire on 13 1 mx 1 m sample stands by analysis of growth rings in the taproot crown of 874 plants. S. spinosum regenerated either by massive seedling recruitment in some habitats or by resprouting from surviving meristems in others. This versatility facilitates adaptation of the species to widely different environmental conditions and is a factor in the maintenance of its dominance after fire at occupied sites. In the years after fire, the growth of younger plants within the stand at all sites was severely suppressed by the older shrubs. Consequently, the age structure of the stands was dominated by one or two older cohorts that became established soon after fire. In addition, on most habitats, older shrubs (usually older than 6 yr) were often composed of clusters of plants that suggested clonal proliferation of ramets. The strongly peaked age structure, together with the appearance of clonal regeneration on the older plants, suggests that subsequent maintenance of the stand was not dependent on recurrent seedling recruitment. This can explain the persistence of S. spinosum in stands of herbaceous vegetation despite the extreme sensitivity of the seedlings to competition under such conditions.     

Stochastic population dynamics of clonal plants: Numerical experiments with ramet and genet models

Dynamics of ramer and genet populations were analyzed by use of stochastic matrix models. Based on field data, population development and extinction rates during 50 simulated years were estimated for ramet populations of three speciesPotentilla anserina, Rubus saxatilis andLinnaea borealis. Only small initial populations (below 125–250 ramets), experienced a detectable risk of extinction within this time interval. ForP. anserina andR. saxatilis, population increase occurred in some simulations despite negative average growth rates. A model for stochastic genet dynamics was constructed by combining field data and hypothesized parameter values. Growth rate and population structure were insensitive to variation in disturbance intensity and frequency, whereas variation in recruitment affected population structure but only to a minor extent growth rate. Decreasing recruitment causes extinction of genet populations, but the time-scale for the decline is in the magnitude of centuries for initial genet populations of about 1000 individuals. Dynamics of genets in clonal plants thus incorporate processes occurring on widely different scales. Some implications of the results for models of population dynamics in long-lived clonal plants are discussed.     

Effects of salinity and clonal integration on the amphibiousplant Paspalum paspaloides: growth,photosynthesis and tissue ion regulation

Aims Clonal integration can increase performance of clonal plants suffering from environmental stress, and clonal plants in many wetlands commonly face stress of flooding accompanied by salinity. However, few studies have tested roles of clonal integration in amphibious plants expanding from terrestrial to aquatic saline habitats.     

Clonal diversity and distribution in Stenocereus eruca (Cactaceae), a narrow endemic cactus of the Sonoran Desert

Stenocereus eruca (Cactaceae), a prostrate cactus endemic to the Sonoran Desert, is thought to be highly clonal. We examined its clonal diversity and distribution: (1) at the population level, in four distinct populations along its distribution range; and (2) at a micro scale level, within a single population. Our objective was to evaluate the importance of sexual versus clonal recruitment through the use of RAPD markers. Contrary to previous field observations, clonal diversity was relatively high across the distribution range. This finding suggests that sexual recruitment is an important regeneration mechanism. The proportions of distinguishable genotypes (G/N = 0.83) and genotypic diversity (D = 0.987) were greater than in other clonal cacti, suggesting that clonal propagation is not the major regeneration mechanism. Autocorrelation analyses revealed a spatial genetic structure that may be the result of restricted gene flow (via pollen or seeds) and clonal propagation. A molecular variance analysis (AMOVA) indicated that most of the variation (66.3%) was found within and not across populations. Future studies on pollen and seed dispersal are needed to understand the role of the clonal habit in the mating system of S. eruca.     

模拟采食干扰下克隆整合对两种箭竹分株种群更新的影响

动物对植物的采食会刺激植物进行补偿性更新生长, 克隆整合效应能够通过分株之间的物质传输增强克隆植物的这种补偿生长。现今对克隆整合效应在箭竹(Fargesia)补偿更新中的作用仍未得到全面认识。2011年10月到2012年11月, 设立了糙花箭竹(Fargesia scabrida)和缺苞箭竹(F. denudata)各40个样方, 分别进行不剪除样方内分株和剪除样方内分株数量的25%、50%、75%四种模拟采食干扰处理, 并将样方四周的根状茎切断或保持连接。从2012年6月起观测并统计了箭竹分株种群的累积出笋率、总出笋率、补充率, 以及新生分株的株高、基径和单株生物量。结果表明: (1)在不剪除分株的样方, 切断根状茎连接显著增加了糙花箭竹的出笋率和补充率, 但降低了新生分株的株高和单株生物量, 也显著降低了缺苞箭竹的出笋率和补充率; (2)保持根状茎连接时, 25%的剪除强度仅仅降低了糙花箭竹新生分株的单株生物量; 同样在保持根状茎连接的条件下, 25%、50%的剪除强度使缺苞箭竹种群的补充率有所降低, 而切断根状茎后缺苞箭竹在25%的剪除强度下的分株补充率反而升高; (3) 75%的剪除强度并未影响两种箭竹新生分株数量更新, 但造成新生分株质量显著下降; 切断根状茎连接显著降低了糙花箭竹的新生分株的株高和基径, 对缺苞箭竹影响不显著。实验证明克隆整合影响了两种箭竹新生分株的萌发、存活和生长, 但不是两种箭竹进行补偿更新的主要机制, 仅在糙花箭竹分株种群受到重度采食干扰后的更新中才起到明显的促进作用; 两种箭竹均能在50%的剪除强度下通过补偿生长恢复种群的稳定, 75%的剪除强度则会造成箭竹新生分株质量的下降。     

Unexpectedly high clonal diversity of two salt marsh perennials across a severe environmental gradient

In salt marsh habitats, noted for their extreme environments, a widely held assumption is that a few large clones dominate plant populations. Using a large number of polymorphic genetic markers, we were able to test this assumption for two salt marsh plants known to span extreme salinity gradients. For both species, clonal diversity was surprisingly high across populations: Simpson's diversity indices were 0.96 and 0.99. Although clonal diversity was high, there was no pattern of association between specific clones or alleles with salt microhabitat. Our findings suggest that sexual reproduction and recruitment from seeds may have been generally underappreciated as an important ecological force in the salt marsh. Furthermore, clonal diversity has implications for conservation and restoration of these critical coastal habitats, particularly with regard to buffering environmental change or disease. Recent studies also suggest that high levels of intraspecific diversity can affect a variety of community and ecosystem processes.     

植物克隆多样性与生态系统功能

克隆繁殖产生基因型相同的个体。通常情况下,局域克隆多样性取决于Eriksson种苗补充机制,即已有基因型丧失和新基因型补充之间的平衡。但是,环境因素对克隆多样性也有着重要的作用,如干扰会通过提供种苗更新机会或影响幼苗生长来改变克隆多样性。以前的研究表明遗传变异程度确定进化潜力,最近的研究揭示出基因型多样性也有着即时效应。较高的基因型多样性可能会因含有抗性基因型概率较高的抽样效应和/或保险机制而提高稳定性。一些研究发现克隆多样性的提高可增加初级生产力、维持动物丰富度和多度,并影响生物地球化学过程。该文也讨论了克隆多样性与生态系统功能关系的机制。     

Scaling of processes shaping the clonal dynamics and genetic mosaic of seagrasses through temporal genetic monitoring

Theoretically, the dynamics of clonal and genetic diversities of clonal plant populations are strongly influenced by the competition among clones and rate of seedling recruitment, but little empirical assessment has been made of such dynamics through temporal genetic surveys. We aimed to quantify 3 years of evolution in the clonal and genetic composition of Zostera marina meadows, comparing parameters describing clonal architecture and genetic diversity at nine microsatellite markers. Variations in clonal structure revealed a decrease in the evenness of ramet distribution among genets. This illustrates the increasing dominance of some clonal lineages (multilocus lineages, MLLs) in populations. Despite the persistence of these MLLs over time, genetic differentiation was much stronger in time than in space, at the local scale. Contrastingly with the short-term evolution of clonal architecture, the patterns of genetic structure and genetic diversity sensu stricto (that is, heterozygosity and allelic richness) were stable in time. These results suggest the coexistence of (i) a fine grained (at the scale of a 20 × 30 m quadrat) stable core of persistent genets originating from an initial seedling recruitment and developing spatial dominance through clonal elongation; and (ii) a local (at the scale of the meadow) pool of transient genets subjected to annual turnover. This simultaneous occurrence of initial and repeated recruitment strategies highlights the different spatial scales at which distinct evolutionary drivers and mating systems (clonal competition, clonal growth, propagule dispersal and so on) operate to shape the dynamics of populations and the evolution of polymorphism in space and time.     

Consequences of prolonged clonal growth on local and regional genetic structure and fruiting success of the forest perennial Maianthemum bifolium

The balance between clonal propagation and sexual reproduction varies among species. Although theory predicts an impact of clonal growth on both‐ within‐ and between population genetic structure, most empirical evidence available to date does not reveal sharp differences between sexually reproducing and clonal species. This has been attributed mainly to the fact that even low levels of sexual recruitment can maintain high levels of genetic diversity. Here we study the effects of prolonged clonal growth and very low rates of sexual recruitment on the genetic structure of the perennial Maianthemum bifolium, an outcrossing understorey species of temperate forests. Average genotypic diversity (0.37) of the populations, as revealed by AFLP, was above the average values reported for species of similar characteristics, but some populations were extremely poor in genotypes. Fruiting success was positively correlated with genotypic diversity, probably as a result of shortage in mating types and compatible pollen in populations poor in genotypes. This was confirmed by a pollination experiment. Fruiting success increased by a factor three when individuals were hand‐pollinated with pollen from a nearby population compared to hand‐pollinations with pollen from the own population. Furthermore, the fruiting success after natural pollination (control individuals) was positively related to number of nearby populations which could act as pollen sources. Given the limited colonization capacity of the species (no seed flow), and the long time since fragmentation of the forest fragments studied, between‐population genetic differentiation was relatively low (Φ_st=0.14). Lack of genetic drift due to long generation times and very limited sexual recruitment is probably responsible for this. Our results show that prolonged clonal growth and lack of sexual recruitment may affect within‐ and between‐ population genetic structure and the capability for sexual reproduction.     

Species-specific sprouting pattern in two dioecious Lindera shrubs: The role of physiological integration

Sprouting is recognized as an important genet persistence strategy for clonal woody plants, but the role of sprouting may differ between species and between sexes, depending on physiological integration. We tested the effect of physiological integration on the mortality, recruitment and growth of the sprouting male and female ramets of two closely related dioecious shrubs of Lindera, in a field experiment using girdling manipulation. Although between-sex differences observed were obscure, we found between-species differences in the sprouting patterns. The rates of ramet mortality and recruitment were significantly lower for L. praecox than L. triloba. In L. praecox genets, the ramet production was low, and the main ramets might actively translocate assimilates towards the small sprouted ramets, which then facilitates high ramet growth and survival (sprout-nursing strategy). Meanwhile, in L. triloba genets, although many ramets were recruited, assimilate translocation from the main ramets to the sprouted ramets might be less abundant, which causes high ramet mortality (sprout-turnover strategy). For a more general knowledge of the various sprouting strategies in clonal plants, our study demonstrated that inter-specific comparisons using girdling experiments at the whole-plant level could reveal the role of physiological integration on the link between the sprouting pattern and above-ground structures of clonal plants.     

Asexual and sexual reproductive strategies in clonal plants

Most plants can reproduce both sexually and asexually (or vegetatively),and the balance between the two reproductive modes may vary widely between and within species.Extensive clonal growth may affect the evolution of life history traits in many ways.First,in some clonal species,sexual reproduction and sex ratio vary largely among populations.Variation in sexual reproduction may strongly affect plant's adaptation to local environments and the evolution of the geographic range.Second,clonal growth can increase floral display,and thus pollinator attraction,while it may impose serious constraints and evolutionary challenges on plants through geitonogamy that may strongly influence pollen dispersal.Geitonogamous pollination can bring a cost to plant fitness through both female and male functions.Some co-evolutionary interactions,therefore,may exist between the spatial structure and the mating behavior of clonal plants.Finally,a trade-off may exist between sexual reproduction and clonal growth.Resource allocation to the two reproductive modes may depend on environmental conditions,competitive dominance,life span,and genetic factors.If different reproductive modes represent adaptive strategies for plants in different environments,we expect that most of the resources should be allocated to sexual reproduction in habitats with fluctuating environmental conditions and strong competition,while clonal growth should be dominant in stable habitats.Yet we know little about the consequence of natural selection on the two reproductive modes and factors which control the balance of the two reproductive modes.Future studies should investigate the reproductive strategies of clonal plants simultaneously from both sexual and asexual perspectives.     

EFFECTS OF FIRE ON CLONAL GROWTH AND DYNAMICS OF PITYOPSIS GRAMINIFOLIA (ASTERACEAE)

The rhizomatous perennial Pityopsis graminifolia was studied in a Florida sandhill community in an annually burned site, a periodically burned site, and a site that has been protected from fire since 1965. These different fire regimes significantly affected the demography and life histories of both plants and plant parts in this clonal species. Fires resulted in reductions in ramet biomass and height, and an increase in the (root + rhizome)/shoot biomass ratio. Burning also decreased the total number of flower heads and new rhizomes produced per ramet. However, the survivorship of initiated rhizomes was greater in burned sites and resulted in a larger number of established daughter ramets per clone. As a result, in burned sites there was a shift in clone structure toward larger numbers of smaller ramets, but there were no significant reductions in seed or rhizome production on a per genet basis. The results showed that the responses to fire in P. graminifolia are different when measured at the genet vs. ramet level and that the effects of fire on clones can be explained by demographic responses of plant parts. Population regeneration in the study sites was dependent on successful clonal ramet production because no seedling recruitment was observed. This suggests that disturbances other than fire are important for new genet recruitment in these clonal populations.     

Clonal structure of natural populations of Cryptomeria japonica growing at different positions on slopes,detected using RAPD markers

Cryptomeria japonica D. Don (Japanese cedar), an economically important timber species endemic to Japan, is dominant on ridges and upper slopes in cool-temperate natural forests of Kyoto Prefecture. Recruitment of sexual progeny in the area near the Japan Sea is extremely rare, and propagation occurs predominantly through clonal growth by layering. The development pattern that occurs with layering and the resulting complexity of the population structure make it difficult to identify distinct clones, even by excavation. Therefore, we used the randomly amplified polymorphic DNA (RAPD) technique to examine the clonal structure of upper- and lower-slope plots established in two C. japonica populations in Kyoto Prefecture. A total of 263 plants sampled from four plots were analyzed using 10 arbitrarily chosen decamer primers, which produced 50 highly reproducible RAPD bands. There was a different clonal structure in upper- and lower-slope plots. Lower-slope plots were made up of a small number of genets with many ramets, while upper-slope plots were made up of a large number of genets with a few ramets. Clonal diversity measured using PD, Simpson’s D, and Fager’s E was higher in the upper-slope plots. These results show that natural C. japonica populations maintain relatively high clonal variation, compared with other clonal plant species, and that repeated seedling recruitment occurred more frequently in upper-slope plots than in lower-slope plots.     

The importance of setting the right genetic distance threshold for identification of clones using amplified fragment length polymorphism: a case study with five species in the tropical plant genus Piper

Amplified fragment length polymorphism (AFLP) has been widely used for clone identification, but numerous studies have shown that clonemates do not always present identical AFLP fingerprints. Pairwise AFLP distances that distinguish known clones from nonclones have been used to identify a threshold genetic dissimilarity distance below which samples are considered to represent a single clone. Most studies to date have reported threshold values between 2% and 4%. Here, I determine the consistency of the clonal threshold across five species in the tropical plant genus Piper, and evaluate the sensitivity of genetic diversity indices and estimates of frequency of clonal reproduction to the threshold value selected. I sampled multiple ramets per individual from widely distributed plants for each of the five Piper species to set a threshold at the point where the error rate of clonal assignments was lowest. I then sampled all individuals of each shade‐tolerant species in a 1‐ha plot, and of each light‐demanding species in 25 × 35‐m plot, to estimate the frequency of asexual recruitment in natural populations using a series of different thresholds including the threshold set with the preliminary sampling. Clonal threshold values for the different species ranged from 0% to 5% AFLP genetic dissimilarity distance. To determine the sensitivity of estimates of clonal reproduction, I calculated several clonal diversity indexes for the natural populations of each of the five species guided by the range in clonal threshold values observed across the five Piper species. I show that small changes in the value of the clonal threshold can lead to very different conclusions regarding the level of clonal reproduction in natural populations.