Molecular Phylogenetics of the Peromyscus boylii Species Group (Rodentia: Muridae) Based on Mitochondrial Cytochrome b Sequences

Variation in the mitochondrial cytochrome b gene (1143 bp) was examined to estimate the phylogenetic relationships of taxa within the Peromyscus boylii species group. In addition, phylogenetic relationships among the aztecus, boylii, and truei species groups were addressed. Maximum-likelihood, neighbor-joining, and maximum-parsimony (weighted and equally weighted) analyses produced similar topologies with P. boylii, P. beatae, P. simulus, P. stephani, P. madrensis, P. levipes, and three undescribed taxa from western Mexico forming a monophyletic unit. At least two of the undescribed taxa from western Mexico potentially represent species. Members of the P. aztecus species group formed a clade separate from the P. boylii group and should be recognized as a distinct species group. P. sagax, P. polius, and P. pectoralis, formerly placed in the P. boylii species group, generally formed an unresolved polytomy with the P. truei, P. aztecus, and P. boylii species groups. P. attwateri formed a sister taxon relationship with members of the P. truei species group (P. difficilis and P. nasutus) and should be considered a member of this group. Members of the P. truei species group did not form a monophyletic unit, indicating that this species group is not monophyletic and may be composed of two assemblages.     

Comparison of the Esterases and Acid Phosphatases in Paramecium multimicronucleatum,Syngens 1–5, P. jenningsi,P. caudatum,and the P. aurelia Complex1

ABSTRACT. Forty-eight stocks in Paramecium jenningsi, syngens 1–5 of P. multimicronucleatum, P. caudatum, P. primaurelia, P. biaurelia, and P. tetraurelia were grown axenically and tested for their esterases and acid phosphatases using starch gel electrophoresis. The five esterases and the acid phosphatases previously characterized in species of the P. aurelia complex were also found in P. jenningsi, and three to four of the esterases and the acid phosphatases were found in the P. multimicronucleatum species complex and in P. caudatum. Additional subtypes were observed for each of the enzyme phenotypes in these new (though here unnamed) species of Paramecium. Two of the new acid phosphatase subtypes, which depart radically in mobility and in pattern, were found in syngen 3 of P. multimicronucleatum and in P. caudatum. Except for syngens 1 and 5 in P. multimicronucleatum, the degree of similarity between syngens 1, 5 and 2, 3, and 4 appears to be very low—perhaps even lower than that seen for species in the aurelia complex. More realistically, the syngens of P. multimicronucleatum should be considered as separate species although they are not here given separate taxonomic names. Limited sharing of subtypes occurred between species in different species complexes. This observation suggests that the molecular distances between species complexes may be even greater than between species within a complex.     

Taxonomy and phylogeny of Puccinia lagenophorae: a study using rDNA sequence data, morphological and host range features

Puccinia lagenophorae is a rust fungus originating from Australasia which has spread throughout the world. A phylogenetic analysis of taxa related to this species was performed using rDNA (LSU, ITS) sequence data. The analyses revealed a well-supported cluster including all specimens of P. lagenophorae. By evaluating morphological and sequence data, the species is taxonomically re-defined and a list of synonyms is provided. Puccinia distincta on Bellis perennis, a species recently separated from P. lagenophorae, P. saccardoi, a species on the Goodeniaceae, and P. byliana, a species so far only known from South Africa, are reduced to synonymy in P. lagenophorae, as are several other species. Our analysis indicates that P. lagenophorae is likely not derived from the northern hemisphere species P. obscura, but from a species from Australia host-alternating between Asteraceae (aecial host) and Cyperaceae/Juncaceae (telial host). Another related species, P. stylidii (on Stylidium sp., Stylidiaceae) may have been derived from the same parental species as P. lagenophorae. From ontogenetical and morphological studies, the presence of pycnia could not be confirmed in the life cycle of this species, and the width of the pedicel of teliospores at the point of attachment was found to be highly variable and not a taxonomic character. The number of known host species is approximately 150, including 41 new host plants recorded herein.     

A multivariate morphometric analysis and systematic review of Pseudonaja (Serpentes,Elapidae, Hydrophiinae)

Pseudonaja is a clade of seven nominal species of elapid snakes distributed throughout Australia and in southern New Guinea. The species‐level systematics of this group is generally considered to be problematic. A recent phylogenetic analysis of mitochondrial DNA sequences for a geographically extensive series of Pseudonaja specimens revealed nine major clades, of which six largely coincide with nominal species (P. affinis, P. guttata, P. inframacula, P. ingrami, P. modesta and P. textilis). The three remaining clades are composed of specimens currently referred to P. nuchalis. This paper presents a multivariate analysis of 30 morphometric variables recorded for 220 specimens, representing the P. affinis, P. inframacula, P. textilis and three P. nuchalis clades (P. guttata, P. ingrami and P. modesta are well‐demarcated species and, accordingly, were not considered). The morphometric data readily separate these putative lineages, affording compelling evidence that they constitute evolutionary species. The names aspidorhyncha and mengdeni are resurrected for two of the three species presently recognized as P. nuchalis. These species, P. affinis, P. inframacula, P. nuchalis and P. textilis are redescribed. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 155 , 171–197.     

The question of cosmopolitanism in the deep-sea ostracod fauna: the example of the genus Pedicythere

Deep-sea Pedicythere species which had been earlier considered as pan-abyssal in distribution are shown to be composite species including similar, but separate species in the Pacific, Indian and Atlantic oceans. Morphology and distribution of Pedicythere are analysed. A key to well-described Cenozoic species and forms in open nomenclature which are referred to Pedicythere is presented, together with an annotated checklist of species. Five new species of Pedicythere are described from the South China Sea: P. hirundo sp. nov., P. gibbera sp. nov., P. dentata sp. nov., P. arator sp. nov. and P. nivea sp. nov.     

Life-history traits of the six Panonychus species from Japan (Acari: Tetranychidae)

Six species of the genus Panonychus are known from Japan. Life-history parameters of all six species were investigated at 25 °C, and for three species two strains of different geographical origin were included. The intrinsic rate of natural increase (r _m ) ranged from 0.172/day for the P. osmanthi albino strain to 0.209/day for P. citri, while the net reproductive rate (R ₀) varied from 23.98 in the thelytokous species P. thelytokus to 46.61 in P. citri. Both values were higher in the polyphagous species (P. ulmi, P. mori and P. citri), which are considered crop pests, than those in the oligophagous species (P. thelytokus and P. osmanthi), considered non-pests. The only exception was P. bambusicola, an oligophagous non-pest species with R ₀- and r _m -values closely resembling those of the three polyphagous species. This revised version was published online in July 2006 with corrections to the Cover Date.     

Comparative study of pollination biology of two closely related alpine Primula species,namely Primula beesiana and P. bulleyana (Primulaceae)

Abstract The comparative pollination biology of a population of Primula beesiana, a population of P. bulleyana, and an overlapping population of these two species in Yulong Shan, Yunnan Province, China, was studied in 2004 and 2005. The results indicate that both P. beesiana and P. bulleyana are typical heterostylous and obligate outcrossing species; the main pollinators of the two species were bees and butterflies. At the sites of all three populations, the main pollinating visitors of the two species showed preference for one of the two species, resulting in the ethological isolation of the two species by the pollinators. This ethological isolation contributes to the reproductive isolation of the two species, which supports the hypothesis that P. beesiana and P. bulleyana are two distinct species. The reproductive isolation of the two species (ethological isolation) is probably an important mechanism in maintaining species boundaries in the genus and has contributed to the species diversification of Primula in the area. In addition, gene exchanges between P. beesiana and P. bulleyana has occurred to some extent in the overlapping population, but whether natural hybridization has contributed to species diversification in Primula remains to be determined.     

Pollination of sevenPlectranthus spp. (Lamiaceae) in southern Natal, South Africa

The genusPlectranthus (Lamiaceae) shows remarkable radiation on the sandstones of southern Natal and northern Transkei in South Africa, where six endemic species occur. Two of these endemic species,P. hilliardiae andP. oribiensis, are included in this study, as well asP. reflexus, for which only limited data are available. The other species that were studied areP. ambiguus, P. ciliatus, P. ecklonii, P. madagascariensis andP. zuluensis. Four of these taxa,P. ambiguus, P. hilliardiae, P. reflexus andP. saccatus var.longitubus, have uniquely long corolla-tubes (20–30mm) and this is related to pollination by nemestrinid flies of the genusStenobasipteron that have proboscides of similar length. Other nemestrinid species of the genusProsoeca have shorter proboscides and pollinate two species ofPlectranthus with shorter corolla-tube lengths (6–15mm). Acrocerid flies, tabanid flies and anthophorid bees are also important visitors to these species. This study on the pollination of seven species of varying corolla-tube lengths shows a correlation between floral tube length and proboscis length of insect visitors, many of which are recorded for the first time as pollinators ofPlectranthus.     

Another example of cryptic diversity in lichen-forming fungi: the new species <Emphasis Type="Italic">Parmelia mayi</Emphasis> (Ascomycota: Parmeliaceae)

In the last decade, a number of cryptic species have been discovered in lichenized fungi, especially in species with a cosmopolitan or disjunctive distribution. Parmelia saxatilis is one of the most common and widely distributed species. Recent molecular studies have detected two species, P. ernstiae and P. serrana, within P. saxatilis s. lat., suggesting the existence of considerable genetic diversity that may not yet be expressed at the phenotypic level. Due to the complexity in the P. saxatilis s. lat. group, we used this as a model to study the species boundary and identify cryptic lineages. We used Phylogenetic (Bayes, ML and MP) and genetic distance approaches to analyze ITS and β-tubulin sequences. Our results confirm the existence of another cryptic lineage within P. saxatilis s. lat. This lineage is described herein as a new species, P. mayi. It forms an independent, strongly supported, monophyletic lineage, distantly related to the morphologically similar species P. ernstiae, P. saxatilis and P. serrana. Morphologically, it is indistinguishable from P. saxatilis but the new species is separated by molecular, bioclimatic, biogeographic and chemical characters. At present, P. mayi appears to have a restricted distribution in the northern Appalachian mountain territories of North America. It is found in climatic conditions ranging from hemiboreal and orotemperate to cryorotemperate ultrahyperhumid bioclimates.     

Comparative study (AFLP and morphology) of three species of Prosopis of the Section Algarobia: P. juliflora, P. pallida, and P. limensis. Evidence for resolution of the “P. pallida–P. juliflora complex”

The problems of delimitation of species of Prosopis originate from the few morphological discontinuities which exist among some of them; some, however, originated as a result of wide distribution of germplasm without proper knowledge of the species, in particular, much material catalogued as P. juliflora, but being of other species, was distributed for reforestation projects worldwide. This work tests the morphological results obtained for P. pallida and P. limensis of the Peruvian–Ecuadorian coast and for P. juliflora of the Caribbean Basin of Colombia and Venezuela utilizing a study of AFLPs and a study of the morphology of plantlets developed in a conventional garden study. The phenogram obtained for the AFLPs demonstrates each of the three species to be a well differentiated cluster and the molecular variance between them is significantly greater than the variance within each species. Study of the plantlets also indicates statistically significant differences for four morphological characters between P. juliflora and the other two species (P. pallida and P. limensis). These results, in addition to the morphological differentiation evident between adult plants of P. pallida and P. limensis and the clear separation of these two species from P. juliflora, corroborate the genetic identity of the three taxa analyzed.     

Die Gattung Plumeria L. (Apocynaceae) auf Kuba

12 endemic species of Plumeria and one often cultivated species could be corfirmed for the island of Cuba. The species are: 1. P. filifolia Griseb., 2. P. clusioides Griseb., 3. P. cubensis Urb., 4. P. nipensis Britt., 5. P. ekmanii Urb., 6. P. emarginata Griseb., 7. P. venosa Britt., 8. P. trinitensis Britt., 9. P. cayensis Urb., 10. P. sericifolia Griseb., 11. P. lanata Britt., 12. P. montana Britt. et Wils. und P. rubra L. as cultivated species. P. alba L., P. obtusa L. and P. tuberculata Lodd. are not present in Cuba.     

Taxonomic review of the genus Pseudostegania Butler, 1881, with description of four new species and comments on its tribal placement in the Larentiinae (Lepidoptera: Geometridae)

The genus Pseudostegania Butler is revised. In addition to the two species known, four species are described as new: P. lijiangensis sp. nov. from Yunnan Province, P. qinlingensis sp. nov. from Gansu and Shaanxi Provinces, P. zhoui sp. nov. from Sichuan Province (China) and P. burmaensis sp. nov. from Burma (Myanmar); two species are newly combined with Pseudostegania: P. distinctaria (Leech, 1897), comb. nov. and P. yargongaria (Oberthür, 1916), comb. nov. All the known species are redescribed and lectotypes are designated for P. defectata (Christoph, 1881), P. distinctaria and P. yargongaria. The generic characters, based on all species, are summarized. The tribal placement of Pseudostegania is discussed. Illustrations of moths and genitalia are presented.     

Comparative intra‐ and interspecific sexual organ reciprocity in four distylous Primula species in the Himalaya‐Hengduan Mountains

• Distyly is a mechanism promoting cross‐pollination within a balanced polymorphism. Numerous studies show that the degree of inter‐morph sexual organ reciprocity (SOR) within species relates to its pollen‐mediated gene flow. Similarly, a lower interspecific SOR should promote interspecific isolation when congeners are sympatric, co‐blooming and share pollinators. In this comparative study, we address the significance of SOR at both intra‐ and interspecific levels.
• Seventeen allopatric and eight sympatric populations representing four Primula species (P. anisodora, P. beesiana, P. bulleyana and P. poissonii) native to the Himalaya‐Hengduan Mountains were measured for eight floral traits in both long‐ and short‐styled morphs. GLMM and spatial overlap methods were used to compare intra‐ and interspecific SOR.
• While floral morphology differed among four Primula species, SOR within species was generally higher than between species, but in species pairs P. poissonii/P. anisodora and P. beesiana/P. bulleyana, the SOR was high at both intra‐ and interspecific levels. We did not detect a significant variation in intraspecific SOR or interspecific SOR when comparing allopatric versus sympatric populations for all species studied.
• As intraspecific SOR increased, disassortative mating may be promoted. As interspecific SOR decreased, interspecific isolation between co‐flowering species pairs also may increase. Hybridisation between congeners occurred when interspecific SOR increased in sympatric populations, as confirmed in two species pairs, P. poissonii/P. anisodora and P. beesiana/P. bulleyana.

     

Molecular phylogeny of the Mediterranean species of Philaenus (Hemiptera: Auchenorrhyncha: Aphrophoridae) using mitochondrial and nuclear DNA sequences

The phylogenies of all eight European species of Philaenus were estimated from cytochrome oxidase subunit I, cytochrome B and internal transcribed spacer 2 (ITS2) fragments of DNA using phylogenetic reconstruction methods: maximum parsimony (MP), maximum likelihood (ML) and Bayesian inference (BI) analyses. Based on the topologies of all obtained phylogenetic trees, the monophyly of Philaenus is well supported, being congruent with morphological, ecological and chromosomal data. Three phylogenetic lineages were distinguished in the mitochondrial and combined (mtDNA with ITS2) trees. The first lineage is represented by only one species, Philaenus maghresignus, which inhabits Maghreb and southern Spain. Clade A includes three species: P. tarifa (Southern Iberia), P. italosignus (Sicily and Southern Italy) and P. signatus (the Balkans and Middle East). In clade B two subclades were recognized: B1 represented by P. loukasi (Southern Balkans) and P. arslani (Middle East), and B2 comprising P. spumarus (the most widespread Palaearctic species) and P. tesselatus (from Southern Iberia and Maghreb). These clades were also retrieved in trees reconstructed from nuclear sequences. However, four species (P. maghresignus, P. tarifa, P. italosignus and P. signatus) showed unresolved polytomy at the base of the nuclear tree. Clade A together with P. maghresignus clustered with the ‘signatus’ group defined from morphology, and clade B with the ‘spumarius’ group; these might be considered separate subgenera. Genetic distances in mitochondrial DNA between ingroup species ranged from 14.0% between P. signatus and P. spumarius to 2.4% between P. tesselatus and P. spumarius. By contrast, genetic divergence of ITS2 between ingroup species was very low, at most 2.1%. The divergence of Philaenus species is estimated to have occcurred between 7.9 and 0.6 Ma. Possibly three main speciation events occurred: the first at the Miocene/Pliocene boundary (c. 5.5 Ma) for deeper splits; the second between 4.2 and 2.5 Ma in the Pliocene, when pairs of more closely related species diverged; and the most recent during the Pleistocene glaciations, when the separation of P. tesselatus and P. spumarius took place. The species status of all Philaenus species is confirmed except for P. tesselatus.     

A Comparative Study of the Infraciliature and Silverline System of the Fresh-Water Scuticociliates Pseudocohnilembus putrinus (Kahl, 1928) nov. comb., P. pusillus (Quennerstedt, 1869) nov. comb., and the Marine Form P. marinus Thompson, 19661

Three species of Pseudocohnilembus were examined with respect to infraciliature and the silverline system. The freshwater species P. putrinus and P. pusillus exhibited no differences in general organization of the argyrophilic structures when compared with the marine P. marinus. A review of the Pseudocohnilembus species that have been described on the basis of silver preparations shows that at present four species have been well characterized: P. pusillus (Quennerstedt, 1869) nov. comb., P. putrinus (Kahl, 1928) nov. comb., P. hargisi Evans & Thompson, 1964, and P. marinus Thompson, 1966, P. persalinus Evans & Thompson, 1964 and P. longiseta Evans & Thompson, 1964 are regarded as identical with the older known P. pusillus, because with respect to morphology and argyrophilic structures they are within the range of variability of that species; and their names thus fall as synonyms of P. pusillus.     

Diploid hybrid speciation in Penstemon (Scrophulariaceae) revisited

Diploid hybrid speciation remains a central issue in plant evolutionary biology. Here we test hypotheses of diploid hybrid speciation and introgressive hybridization in Penstemon section Peltanthera where P. spectabilis is a purported hybrid derivative species of the progenitors P. centranthifolius and P. grinnellii, and P. clevelandii is regarded as a hybrid derivative of P. centranthifolius and P. spectabilis. Forty-five populations representing P. centranthifolius (subsection Centranthifolii); P. spectabilis, P. clevelandii, P. grinnellii, P. palmeri in subsection Spectabiles; and P. × parishii (a purported hybrid between P. centranthifolius and P. spectabilis) were examined for allozyme differentiation. Penstemon centranthifolius has high-frequency allozymes at seven isozyme loci that differentiate it from species in subsection Spectabiles, whereas no genetic markers are detected that reliably differentiate species within Spectabiles. Because our data reveal that P. centranthifolius is genetically distinct compared to species in Spectabiles, we conclude that a recent hybrid origin of P. spectabilis and P. clevelandii with P. centranthifolius as a progenitor is not supported. Bidirectional gene flow and introgression between P. centranthifolius and species of subsection Spectabiles is indicated, however, based on the low-frequency occurrence of P. centranthifolius marker alleles in species of Spectabiles and of Spectabiles marker alleles in P. centranthifolius in areas of sympatry.     

Inter- and intrapopulation genetic variation in species ofPorphyra (Rhodophyta: Bangiales) from British Columbia and adjacent waters

Starch gel electrophoresis of 17 proteins has provided data on inter- and intrapopulation genetic variation in 20 species ofPorphyra occurring in British Columbia and adjacent areas.P. cuneiformis andP. nereocystis showed no within species variation, even over ranges of more than 1000 km. Populations ofP. abbottae, P. fallax, P. fucicola, P. gardneri andP. schizophylla were characterized by fixation for certain alleles. The number of polymorphic loci in a population ranged from zero to nine, depending on the species. Six species had populations that were polymorphic at just a single locus. Only two species (P. mumfordii andP. pseudolanceolata) had populations that were polymorphic at more than three loci. These levels of genetic variation are lower than those reported for populations of JapanesePorphyra species. Eleven taxa were polymorphic for 6-phosphogluconate dehydrogenase, the most variable enzyme. No within species polymorphisms were detected for bromoperoxidase, lactate dehydrogenase, superoxide dismutase or phycoerythrin. Possible evidence for the chimeric nature of the thallus was observed only inP. mumfordii.