Widespread Occurrence of Bd in French Guiana,South America

The amphibian chytrid fungus Batrachochytrium dendrobatidis (Bd) is a purported agent of decline and extinction of many amphibian populations worldwide. Its occurrence remains poorly documented in many tropical regions, including the Guiana Shield, despite the area’s high amphibian diversity. We conducted a comprehensive assessment of Bd in French Guiana in order to (1) determine its geographical distribution, (2) test variation of Bd prevalence among species in French Guiana and compare it to earlier reported values in other South American anuran species (http://www.bd-maps.net; 123 species from 15 genera) to define sentinel species for future work, (3) track changes in prevalence through time and (4) determine if Bd presence had a negative effect on one selected species. We tested the presence of Bd in 14 species at 11 sites for a total of 1053 samples (306 in 2009 and 747 in 2012). At least one Bd-positive individual was found at eight out of 11 sites, suggesting a wide distribution of Bd in French Guiana. The pathogen was not uniformly distributed among the studied amphibian hosts, with Dendrobatidae species displaying the highest prevalence (12.4%) as compared to Bufonidae (2.6 %) and Hylidae (1.5%). In contrast to earlier reported values, we found highest prevalence for three Dendrobatidae species and two of them displayed an increase in Bd prevalence from 2009 to 2012. Those three species might be the sentinel species of choice for French Guiana. For Dendrobates tinctorius, of key conservation value in the Guiana Shield, smaller female individuals were more likely to be infected, suggesting either that frogs can outgrow their chytrid infections or that the disease induces developmental stress limiting growth. Generally, our study supports the idea that Bd is more widespread than previously thought and occurs at remote places in the lowland forest of the Guiana shield.     

Plant introduction,naturalization, and invasion in French Guiana (South America)

Continental tropical ecosystems are generally viewed as less vulnerable to biological invasions than island ones. Their apparent resistance to invasive alien species is often attributed to their higher native biota diversity and complexity. However, with the increase of human activities and disturbances and the accelerate rate of introductions of plant species, these apparently resilient continental ecosystems are now experiencing alien plant naturalization and invasion events. In order to illustrate this emergent phenomenon, we compiled a list of all known introduced and naturalized plant species in French Guiana (Guiana Shield, South America). A total of 490 alien plants were recorded, about 34% of which are currently naturalized, mainly species belonging to the Acanthaceae and Fabaceae (Faboideae) in the Eudicotyledons, and Poaceae (grasses) and Arecaceae (palms) in the Monocotyledons. The coastal dry and wet savannas appears to be vulnerable to plant invasion (with 165 naturalized species, about 34% of the alien flora), especially by Acacia mangium (Mimosaceae) and Melaleuca quinquenervia (Myrtaceae) which are forming localized but dense monotypic stands. Both tree species, intentionnally introduced for reforestation, rehabilitation, and as garden ornamentals and have the potential to spread with increasing human disturbances The number and abundance of naturalized alien plants in the relatively undisturbed tropical lowland rainforests and savannas remains still very low. Therefore, surveillance, early detection, and eradication of potential plant invaders are crucial; moreover collaboration with neighbouring countries of the Guiana Shield is essential to prevent the introduction of potentially invasive species which are still not present in French Guiana.     

First catalogue of the rust fungi of French Guiana, northern South America

An annotated list of the rust fungi (Uredinales or Pucciniales) of French Guiana is presented. It enumerates 68 species of which 57 are new reports for the department and 3, Aecidium plukenetiae, Puccinia kourouensis and P. parianicola, are new to science. Dicheirinia guianensis and Hapalophragmium angylocalycis are excluded from the French Guianan mycobiota. New host plants are reported for Batistopsora crucis-filii, B. pistila, Cerotelium ficicola, C. sabiceae, Crossopsora piperis, Desmella aneimiae, Endophyllum guttatum, Kweilingia divina, Puccinia lateritia, Uredo anthurii and Uromyces anguriae. Previously undescribed characters are presented for Achrotelium lucumae, Chaconia ingae, Cerotelium sabiceae, Prospodium amapaensis, Sphenospora smilacina and Uromyces wulffiae-stenoglossae. Chaconia ingae showed haustorial complexes comprising both intracellular hyphae and D-haustoria. In Cerotelium sabiceae, the haustorial mother cells retained the nuclei while D-haustoria were enucleate. The occurrence of these haustorial types in tropical rust fungi is discussed. Internal basidium formation is described for the first time in Sphenospora: teliospores of S. smilacina produced external or internal basidia. The species richness and composition of the French Guianan rust mycobiota are discussed in a neotropical context.     

Fish richness and species-habitat relationships in two coastal streams of French Guiana, South America

We examined the factors controlling fish species richness and taxa-habitat relationships in the Malmanoury and Karouabo coastal streams in French Guiana between the short and long rainy seasons. The aims were to evaluate the environmental factors that describe species richness on different scales and to define the ecological requirements of fish taxa in the two streams at that period of the year. We sampled ten regularly spaced freshwater sites in each stream with rotenone. We caught a total of 7725 individuals representing 52 taxa from 21 families and 6 orders. More taxa were caught in the Malmanoury (n=46) than in the Karouabo stream (n=37). These values augmented by the number of fish taxa caught only by gill nets in a parallel survey fitted very well to a log-log model of fish richness versus catchment area in Guianese rivers. Most of the fish taxa encountered in the Malmanoury and Karouabo streams were of freshwater origin and nearly all the fish species caught in these two small coastal streams were also found in the nearby Sinnamary River with the exceptions of the cichlid Heros severus and the characid Crenuchus spirulus. Moreover, no significant relationship was found between a size-independent estimate of fish richness and distance from the Ocean. Thus, despite their coastal position, the Malmanoury and Karouabo streams contained fish assemblages with strong continental affinities. At a local scale, independently of site size, those with relatively more habitat types harbored a relatively greater number of fish taxa. Canopy cover, water conductivity and bank length were the most important environmental variables for fish assemblage composition at that period of the year. Oxygen and vegetation participated also in defining fish habitat requirements but to a lesser extent. This revised version was published online in July 2006 with corrections to the Cover Date.     

Comparative morphology and diet of young cichlids in the dammed Sinnamary river, French Guiana, South America

The growth of most mensural characters of Krobia guianensis and Crenicichla saxatilis during early development was explained by a split regression indicating inflection in allometry at specific standard lengths. Double-centred PCA revealed morphological transformations during ontogeny mostly under the influence of the maximum body depth and the maximum caudal peduncle width, the area of the caudal fin and the horizontal diameter of the eye contributing also, but to a lesser extent. Young K. guianensis switched to larger prey at the end of the period when the growth of most of their studied mensural characters demonstrated an inflection, but young C. saxatilis changed their diet at a much smaller size than that at which an inflection occurred. However, in the lower reservoir sites, most young juveniles of K. guianensis and C. saxatilis did not switch to larger items during their ontogeny and micro-crustaceans occurred more frequently in their diet. It is hypothesized that the low net energy gained when eating such small prey may explain why the young of both species were thinner at these sites than in their undisturbed habitats. If food resources of young cichlids do not improve in the Petit-Saut reservoir, it is hypothesized that these species will develop stunted populations there.     

Stability of plant communities along a tropical inselberg ecotone in French Guiana (South America)

We questioned whether and how plant communities vary in space and time along an inselberg-rainforest ecotone in relation to present-day warming and whether biotic and non-biotic factors could explain the observed patterns. The study took place on a granitic inselberg in the French Guianan (South America) rainforest (Nouragues Natural Reserve: 4°5′N, 52°41′W). In a diachronic study (1995–2005) embracing a severe El-Niño event in 1997, we analysed vegetation structure and composition along three transects subsuming whole environmental and topographical variations in the transition zone from shrub vegetation at the fringe of open-rock vegetation to tall-tree rainforest. Data were analysed by PCA. Major variations in species and trait distribution were described in the low forest, with two floristic types evidenced by first PCA component and verified by cluster analysis: one with floristic composition reminiscent of open-rock vegetation but with higher and continuous canopy, the other typical of the low forest. There is no clear-cut boundary between typical open-rock and low forest vegetation. Variation in species composition of typical low forest was evidenced by second PCA component, which displayed differences according to slope and altitude. Small (∼1.5 m), although significant, shifts in the spatial distribution of plant species pointed to possible slow encroachment of typical low forest vegetation in the absence of disturbance. However, the stability of species and trait distribution was remarkable within the 10-yr interval considered, despite an otherwise recorded decrease in species richness and recruitment. The boundary between typical low forest and open-rock-like vegetation coincided with the spatial limit of the mineral soil above granite. Despite demographic accidents due to severe El Niño events, plant communities at the fringe of a tropical inselberg are stable at short-time both in composition and spatial distribution. In the absence of strong disturbances such as wildfire and further erosion, soil availability for roots could be interpreted as an environmental constraint to the successional development of forest vegetation. Soil development might thus act as an ecological barrier to forest encroachment, which could only be alleviated by erosion recovery, as otherwise demonstrated.     

Body shape, diet and ontogenetic diet shifts in young fish of the Sinnamary River, French Guiana, South America

A total of 1468 young fish representing 66 taxa from the Sinnamary River, French Guiana was classified by complete cluster analysis of mean relative body width and mean relative body height into four groups. These had anguilliform, disciform, flat or intermediate body shapes and belonged chiefly to Gymnotiformes, Perciformes, Siluriformes and Characiformes, respectively. Several of the taxa shifted from one to another body shape during ontogenesis. Seven diet groups were defined by complete cluster analysis. Among these, six groups were represented by carnivorous fish. The three most frequent groups had diets of (1) mainly insect larvae and small crustaceans, (2) insect larvae, and (3) predominantly terrestrial insects. The majority of the fish taxa showed ontogenetic diet shifts. Carnivorous fish usually switched from small-size prey, such as small crustaceans, to intermediate-size prey, such as insect larvae and/or to large-size prey, such as insects and/or fish. However, taxa differed in their capacities to switch from small prey to intermediate and/or to large prey. Taxa of different body shapes had significantly different diets. Disciform fish fed mainly on aquatic insect larvae and terrestrial insects but also, in small amounts, on small curstaceans. Most anguilliform taxa ate insect larvae. Individuals belonging to the depressiform or intermediate morphotype had varied diets ranging from plant debris and substratum to fish.     

西藏南部8种鸟类的新分布记录

2016年9和10月,在西藏自治区林芝及日喀则开展鸟类多样性调查期间新记录到8种鸟类,包括白胸翡翠指名亚种(Halcyon smyrnensis smyrnensis)、黑冠山雀指名亚种(Periparus rubidiventris rubidiventris)和栗腹?指名亚种(Sitta cinnamoventris cinnamoventris)、斑尾鹃鸠(Macropygia unchall)、红喉姬鹟(Ficedula albicilla)、黄胸柳莺(Phylloscopus cantator)、棕脸鹟莺(Abroscopus albogularis)以及田鹨(Anthus richardi)。     

Histoplasma capsulatum in Cayenne, French Guiana

We carried out a soil sampling survey in September 2008 in central Cayenne, French Guiana, using molecular methods to assess the presence of the dimorphic fungus Histoplasma capsulatum. Four of the 31 samples collected (12.9?%) tested positive by PCR, with confirmation of the result by DNA sequencing. H. capsulatum is therefore present in urban environments in French Guiana. These results provide additional support for the primary prophylaxis of AIDS-related histoplasmosis in French Guiana.     

The sources and distribution of carbon (DOC,POC, DIC) in a mangrove dominated estuary (French Guiana,South America)

Improved quantification of the factors controlling soil organic matter (SOM) stabilization at continental to global scales is needed to inform projections of the largest actively cycling terrestrial carbon pool on Earth, and its response to environmental change. Biogeochemical models rely almost exclusively on clay content to modify rates of SOM turnover and fluxes of climate-active CO₂ to the atmosphere. Emerging conceptual understanding, however, suggests other soil physicochemical properties may predict SOM stabilization better than clay content. We addressed this discrepancy by synthesizing data from over 5,500 soil profiles spanning continental scale environmental gradients. Here, we demonstrate that other physicochemical parameters are much stronger predictors of SOM content, with clay content having relatively little explanatory power. We show that exchangeable calcium strongly predicted SOM content in water-limited, alkaline soils, whereas with increasing moisture availability and acidity, iron- and aluminum-oxyhydroxides emerged as better predictors, demonstrating that the relative importance of SOM stabilization mechanisms scales with climate and acidity. These results highlight the urgent need to modify biogeochemical models to better reflect the role of soil physicochemical properties in SOM cycling.     

Species delimitation and phylogeny in the genus Nasutitermes (Termitidae: Nasutitermitinae) in French Guiana

Species delimitation and identification can be arduous for taxa whose morphologic characters are easily confused, which can hamper global biodiversity assessments and pest species management. Exploratory methods of species delimitation that use DNA sequence as their primary information source to establish group membership and estimate putative species boundaries are useful approaches, complementary to traditional taxonomy. Termites of the genus Nasutitermes make interesting models for the application of such methods. They are dominant in Neotropical primary forests but also represent major agricultural and structural pests. Despite the prevalence, pivotal ecological role and economical impact of this group, the taxonomy of Nasutitermes species mainly depends on unreliable characters of soldier external morphology. Here, we generated robust species hypotheses for 79 Nasutitermes colonies sampled throughout French Guiana without any a priori knowledge of species affiliation. Sequence analysis of the mitochondrial cytochrome oxidase II gene was coupled with exploratory species‐delimitation tools, using the automatic barcode gap discovery method (ABGD) and a generalized mixed Yule‐coalescent model (GMYC) to propose primary species hypotheses (PSHs). PSHs were revaluated using phylogenetic analyses of two more loci (mitochondrial 16S rDNA and nuclear internal transcribed spacer 2) leading to 16 retained secondary species hypotheses (RSSH). Seven RSSHs, represented by 44/79 of the sampled colonies, were morphologically affiliated to species recognized as pests in the Neotropics, where they represent a real invasive pest potential in the context of growing ecosystem anthropization. Multigenic phylogenies based on combined alignments (1426–1784 bp) were also reconstructed to identify ancestral ecological niches and major‐pest lineages, revealing that Guyanese pest species do not form monophyletic groups.     

北美东部8种温带树种向北分布的限制气候因子

利用分布于北美东部的 8种温带落叶树种为研究材料 ,应用反映热量和降水状况的 11个变量为气候指标 ,用标准差分析方法分析了这 8个树种的分布北界与气候因子之间的关系。结果表明 ,在所使用的气候指标中 ,同一树种不同地点的温暖指数或年生物温度的标准差最小 ,说明积温是限制这些树种向北分布的主要气候因子 ;温暖指数和寒冷指数随着年降水量的增大而减小 ,寒冷指数随着年较差的增加而增加 ,温暖指数随着水热综合指数的增加表现出减小的趋势。表明 ,除了生长季节的积温之外 ,降水和大陆性等气候条件对温带树种向北分布也起着重要作用     

北美东部8种温带树种向北分布的限制气候因子

利用分布于北美东部的8种温带落叶树种为研究材料,应用反映热量和降水状况的11个变量为气候指标,用标准差分析方法分析了这8个树种的分布北界与气候因子之间的关系.结果表明,在所使用的气候指标中,同一树种不同地点的温暖指数或年生物温度的标准差最小,说明积温是限制这些树种向北分布的主要气候因子;温暖指数和寒冷指数随着年降水量的增大而减小,寒冷指数随着年较差的增加而增加,温暖指数随着水热综合指数的增加表现出减小的趋势.表明,除了生长季节的积温之外,降水和大陆性等气候条件对温带树种向北分布也起着重要作用.     

Early dry-season community structure and habitat use of young fish in tributaries of the River Sinnamary (French Guiana, South America) before and after hydrodam operation

We examined fish community structure and habitat use at the start of the dry seasons: (1) in 10 tributaries of the River Sinnamary (French Guiana) before and after the start of dam operation, and (2) in 10 upstream tributaries and at 10 littoral sites in the newly-created reservoir after the start of operation to assess the impact on fish juveniles of a hydroelectric dam built on the river's lower section. After the first year of dam operation, juvenile fish communities downstream of the dam showed an important decrease of the relative abundance of Characiformes, and Perciformes dominated. Principal components analysis revealed a distinct upstream-to-downstream progression in the juvenile fish communities with post-reservoir downstream and reservoir sites representing transitions between the upstream and pre-reservoir downstream sites. Canonical correspondence analysis and electivity indices of fish-habitat associations revealed three relatively distinct groups of sites, corresponding to the downstream, reservoir and upstream taxa. The proportion of juveniles presenting higher-than expected frequencies (Fisher's exact test) towards local environmental variables was higher for taxa more often caught in upstream sites. Inversely, juvenile taxa more frequently observed in downstream and reservoir sites appeared less selective towards local environmental characteristics. In the downstream reaches of the river, hydrodam operation is expected to drive the fish community towards a new biologically accommodated state where tolerant species will dominate and sensitive species will be lacking. This revised version was published online in July 2006 with corrections to the Cover Date.