Transformative research: definitions, approaches and consequences

In this perspective a definition of transformative research (TR) is proposed and discussed. We define TR as that which "transforms" or causes a major change in thought patterns concerning an area of scientific endeavor. This type of research is often elusive, requires different approaches and sometimes depends on a bit of luck. TR concerns intangibles such as human intuition, serendipity, unpredictable events, implausible hypotheses, a well-prepared mind and often interpersonal communications. Examples are provided to illustrate how TR may unfold. Contributions it makes to basic and applied humanistic knowledge are highlighted.     

Multiple definitions of food web statistics: An unnecessary problem for food web research

Three of the statistics that are regularly used to describe food web structure have been defined in two different ways. The use of these statistics by several authors illustrates some of the problems caused by the existence of two different definitions for what is, at least in name, the same statistic.     

Scar assessment tools: implications for current research

Scarring is considered a major medical problem that leads to cosmetic and functional sequelae. Scar tissue is clinically distinguished from normal skin by an aberrant color, rough surface texture, increased thickness (hypertrophy), occurrence of contraction, and firmness. Marked histologic differences are the change in dermal architecture and the presence of cells such as the myofibroblast. Many assessment tools are available for analysis of pathologic conditions of the skin; however, there is no general agreement as to the most appropriate tools for evaluation of scar tissue. This review critically discusses currently available objective measurement tools, subjective assessment tools, and potential devices that may be available in the future for scar assessment.     

Questioning Scrutiny

The clinic is a loaded space for LGBTQI persons. Historically a site of pathology and culturally a site of stigma, the contemporary clinic for queer patient populations and their loved ones is an ethically fraught space. This paper, which introduces the featured articles of this special issue of the Journal of Bioethical Inquiry on ??Bioethics, Sexuality, and Gender Identity,?? begins by offering an analysis of scrutiny itself. How do we scrutinize? When is it apt for us to scrutinize? And what are the benefits and perils of clinical and bioethical scrutiny? Bearing in mind these questions, the second half of this paper introduces the feature articles in this special issue in response to such forms of scrutiny. How, why, when, and in what ways to sensitively scrutinize LGBTQI persons in the clinic are the aims of this piece.     

Evolutionary fallacies of Nazi psychiatry. Implications for current research

Evolutionary theory has had a major impact on psychiatry since the middle of the 19th century. During the Nazi regime psychiatry supported compulsory sterilization and euthanasia of physically and mentally ill and subsequently the killing of "inferior" races by borrowing scientifically invalid conclusions from evolutionary biology. The present paper deals with some of the flaws and shortcomings of the scientific paradigms of evolutionary theory adopted by psychiatry during the Nazi regime and discusses possible implications for modern research in evolutionary psychology and psychiatry.     

Formal definitions of Slovakian mire plant associations and their application in regional research

We applied the Cocktail method to a large data set of 4 117 relevés of all Slovak vegetation types with the aim to create formalised definitions of all Slovakian mire plant associations. We defined 21 groups of species with the statistical tendency of joint occurrences in vegetation. These groups differed substantially in their position along the pH/calcium gradient. We further defined 24 plant associations according to presence and/or absence of certain groups and/or strong dominance of some species. Only six traditional plant associations were not possible to be reproduced this way. We applied our formalised definitions to the regional data set of mires from the surrounding of the Vysoké Tatry Mts. Combined with frequency-positive fidelity index this method has led to the classification of the majority of vegetation plots into ten associations. When the vegetation types obtained from Cocktail-based classification and from cluster analysis were compared with respect to measured pH and conductivity in the study region, 82% of pairs differed significantly either in pH or in water conductivity in the former classification and 69% in the latter one.     

Toward consistent definitions for preload and afterload

Significant differences exist among textbook definitions for the terms preload and afterload, leading to confusion and frustration among students and faculty alike. Many faculty also chose to use in their teaching simple terms such as "end-diastolic volume" or "aortic pressure" as common-usage approximations of preload and afterload, respectively, but these are only partial representations of these important concepts. Straightforward definitions both of preload and afterload that are concise yet still comprehensive can be developed using the Law of LaPlace to describe the relationships among chamber pressure, chamber radius, and wall thickness. Within this context, the term "preload" can be defined as all of the factors that contribute to passive ventricular wall stress (or tension) at the end of diastole, and the term "afterload" can be defined as all of the factors that contribute to total myocardial wall stress (or tension) during systolic ejection. The inclusion of "wall stress" in both definitions helps the student appreciate both the complexities of cardiac pathophysiology and the rationale for therapeutic intervention.     

Proposal for basic definitions in experimental hematology

This paper is concerned with basic definitions of cellular stages, processes, and factors in the hemopoietic system from a physiological and operational point of view. In most instances it was also attempted to delineate the relationship between equivalent physiological and operational terms. Such physiological terms were defined for the hemopoietic system, hemopoietic stroma, cell compartment, stem cell, progenitor cell, precursor cell and end cell. The following operational terms were included: hemopoiesis repopulating cell, spleen colony forming unit, transient endogenous colony forming unit, antitheta-sensitive regulatory cell, erythropoietic burst forming unit, granulocyte-macrophage colony forming cell, and marrow fibroblastoid colony forming unit. Subsequently, the following processes were defined: differentiation, maturation, self-renewal, proliferation, regulation and cloning. Moreover, the meanings of macro- and microenvironment of hemopoiesis were explained and definitions of hemopoietic hormones, regulatory cells, such as helpers and suppressors were proposed. Finally, such operational terms were precised as colony stimulating activity, colony stimulating factor, conditioned medium and underlayer. It is hoped that the proposed definitions will be helpful for those readers unacquainted with the specific terminology in the field of experimental hematology and that they will serve as a preliminary step towards international standardization of the terminology in this field.     

Regression analysis of "current status" life tables on duration of breastfeeding in Sri Lanka

Provided that women report the dates of their children's births with reasonable accuracy, it is possible to derive good estimates of the duration of breastfeeding from women's breastfeeding status at the time of the interview. This paper illustrates the application of conventional regression techniques to the analysis of breastfeeding rates derived in this manner. Construction of current status rates is explained and a comparison between open interval, closed interval, and current status breastfeeding life tables is presented, indicating the extent of bias to which tables of the former types are open. Birth-weighted rates are used for WFS data from Sri Lanka; the variables entered into the regression equation include parity, educational level, residence, work experience since marriage and use of contraception since the birth. Contraception is not found to influence net breastfeeding rates in the 1st interval (1-16 months), although it is about as prevalent as in later intervals. The positive coefficients at intervals beyond the 1st also imply that contraceptive use is not a substitute for lactation in Sri Lanka or not a predominant one. Lifetime urban residence is associated with short durations of breastfeeding, and being an urban migrant is associated with intermediate durations relative to those of rural women. The effects of residence on breastfeeding are especially pronounced in the 1st interval. By parity as by contraception, differences in breastfeeding rates are not significant at short durations but become so with time as lower parity women reach pregnancy. Patterns by age are similar, but less sharp. Middle school attendance and work at home are both strongly associated with with lactation behavior, the former negatively and the latter to about an equal degree positively. Working outside the home seems not to influence breastfeeding to any great extent. In the multiple attribute regressions, middle schooling depresses breastfeeding durations about as strongly as lifetime urban residence relative to women who are rural and uneducated. Being at parity 5 or above or working at home almost as sharply increases durations. The use of contraception has slightly smaller positive effects. The patterns suggest that as Sri Lankan women become increasingly well educated and urban, and as family sizes decline, durations of breastfeeding will decline. Equally important however, even among better educated urban wives, breastfeeding continues longer than is typical of western countries.     

增强子RNA研究现状

增强子是真核生物基因表达调控的主要顺式作用元件,能有效促进基因表达。活化的增强子可以转录生成增强子RNA (enhancer RNAs, eRNAs),其合成受到信号系统和信号转录因子的约束。eRNAs与其他转录本(如lncRNAs和mRNAs)相比,其长度更短、稳定性更差、组织特异性更强。此外,eRNAs对增强子与启动子之间的染色质环(looping)的形成和稳定有一定的作用,并能促进靶基因的表达。目前,越来越多的研究发现eRNAs在发育和疾病发生等生物学过程中扮演着重要角色,但是其功能研究一直进展缓慢,调控机制尚不清楚。本文概述了eRNAs的特征、研究方法和功能特性,探讨了eRNAs作为潜在治疗靶标的可能性,以期为eRNAs的后续研究提供参考。