Living Target of Ce(III) Action on Horseradish Cells: Proteins on/in Cell Membrane

Positive and negative effects of rare earth elements (REEs) in life have been reported in many papers, but the cellular mechanisms have not been answered, especially the action sites of REEs on plasma membrane are unknown. Proteins on/in the plasma membrane perform main functions of the plasma membrane. Cerium (Ce) is the richest REEs in crust. Thus, the interaction between Ce(III) and the proteins on/in the plasma membrane, the morphology of protoplast, and the contents of nutrient elements in protoplast of horseradish were investigated using the optimized combination of the fluorescence microscopy, fluorescence spectroscopy, circular dichroism, scanning electron microscopy, and X-ray energy dispersive spectroscopy. It was found that Ce(III) at the low concentrations (10, 30???M) could interact with proteins on/in the plasma membrane of horseradish, leading to the improvement in the structure of membrane proteins and the plasma membrane, which accelerated the intra-/extra-cellular substance exchange and further promoted the development of cells. When horseradish was treated with Ce(III) at the high concentrations (60, 80???M), Ce(III) also could interact with the proteins on/in the plasma membrane of horseradish, leading to the destruction in the structure of membrane proteins and the plasma membrane. These effects decelerated the intra-/extra-cellular substance exchange and further inhibited the development of cells. Thus, the interaction between Ce(III) and proteins on/in the plasma membrane in plants was an important reason of the positive and negative effects of Ce(III) on plants. The results would provide some references for understanding the cellular effect mechanisms of REEs on plants.     

Isolation and characterization of rare earth element-binding protein in roots of maize

Rare earth element-binding protein was isolated from maize, which was grown under greenhouse conditions and characterized in terms of molecular weight, amino acid composition, and ultraviolet absorption. The molecular weight of the maize protein was determined to be 183,000, with two distinct subunits of approximately molecular weights of 22,000 and 69,000, respectively. The protein is particularly rich in asparagine/aspartic acid, glutamine/glutamic acid, glycine, alanine, and leucine and contains 8.0% of covalently bound carbohydrate. The ultraviolet absorption of the protein is low at 280 nm and no change in the adsorption was observed with a change in pH. Compared to the unique features of the metallothioneins with a molecular weight of approximately 10,000, a high cysteine content of 30%, high absorption at 254 nm and a low absorption at 280 nm, and absorption change with pH, the REE-binding protein is unlikely to be plant metallothionein in nature. It was found that an almost twofold greater concentration was found for most of the REEs in the protein isolated from the maize with REE fertilizer use than that without REE fertilizer. This study suggests that the REE-binding protein is a glycoprotein and REEs can be firmly bound with the protein of maize roots.     

Photosystem 2 activities of hyper-accumulator Dicranopteris dichotoma Bernh from a light rare earth elements mine

The distribution of rare earth elements (REEs) in the fern Dicranopteris dichotoma Bernh plants from a light rare earth elements mine (LRM) and a non-mining (NM) area in Longnan county of Jiangxi province, China were investigated by means of inductively coupled plasma-mass spectrometry, transmission electron microscopy, and energy-dispersive X-ray microanalysis. The photosynthetic characteristics of D. dichotoma were studied by chlorophyll (Chl) a fluorescence kinetics. Contents of REEs in the lamina and the root of D. dichotoma were higher than those in soils, and were mainly distributed in lamina. A part of them was found in the chloroplast. By comparing with D. dichotoma from NM area, the efficiency of photosystem 2 photochemistry and electron transport rate were significantly enhanced in lamina of the plant from LRM because most of REEs deposits were distributed along cell wall, in vacuole, and in chloroplast. High contents of REEs in lamina did not decrease the photosynthetic activities in LRM plants of D. dichotoma. Besides, D. dichotoma could change its β-carotene content to avoid the damaging effect of high REEs content.     

Fractionations of rare earth elements in plants and their conceptive model

Fractionations of rare earth elements (REEs) and their mechanisms in soybean were studied through application of exogenous mixed REEs under hydroponic conditions. Significant enrichment of middle REEs (MREEs) and heavy REEs (HREEs) was observed in plant roots and leaves respectively, with slight fractionation between light REEs (LREEs) and HREEs in stems. Moreover, the tetrad effect was observed in these organs. Investigations into REE speciation in roots and in the xylem sap using X-ray absorption spectroscopy (XAS) and nanometer-sized TiO2 adsorption techniques, associated with other controlled experiments, demonstrated that REE fractionations should be dominated by fixation mechanism in roots caused by cell wall absorption and phosphate precipitation, and by the combined effects of fixation mechanism and transport mechanism in aboveground parts caused by solution complexation by intrinsic organic ligands. A conceptive model was established for REE fractionations in plants based on the above studies.     

Rare earth elements in soil and plant systems - A review

The rare earth elements (REEs) form a chemically uniform group and include yttrium (Y), lanthanum (La) and the lanthanides cerium (Ce), praseodymium (Pr), neodymium (Nd), promethium (Pm), samarium (Sm), europium (Eu), gadolinium (Gd), terbium (Tb), dysprosium (Dy), holmium (Ho), erbium (Er), thulium (Tm), ytterbium (Yb), and lutetium (Lu). Their average abundance in the Earth’s crust range from 66μg g⁻¹ in Ce to 0.5μg g⁻¹ in Tm and ?0.1μg g⁻¹ in Pm. Recent great improvements in more routine analytical technique, the use of REEs as fertilisers, at least in East Asian agriculture, and the importance of these elements as indicators in both pedological and physiological processes and reactions have contributed to an increased interest in these previously less considered elements in environmental sciences. This review of recent and current literature deals with REEs in primary and secondary soil minerals, concentrations in surface soils, factors influencing adsorption, solubility and transport in soils, including weathering and transformations of REE minerals, and vertical distribution in soil profiles. Reviewed and discussed are also concentrations, distribution and localisation of REEs in plants and plant organs, soil-plant relationships and interactions, effects on plant growth and crop production and their importance in plant physiology and biochemistry. The REEs are found, usually several elements together, as phosphates, carbonates and silicate minerals finely dispersed especially in magmatic and metamorphic rocks. REE concentrations in surface soils of humid climates, such as the A(E)-horizons of Podzols and Laterites, are usually lower than in the parent material, due to higher weathering and leaching rates than of the average soil constituents. Some fractionation may occur due to the formation of more element-specific secondary minerals. Transfer from soil to plant is usually low, but extreme accumulators are found, e.g., among several species of ferns. Roots have generally higher concentrations than shoots. Possible uptakemechanisms of REEs are discussed. Uptake is positively, though often weakly, correlated with soil acidity and easily soluble concentrations of the elements, but rarely well related to their total concentrations in the soil. Under certain conditions, low concentrations of at least some REEs seem to favour plant growth and productivity, but the physiological mechanisms are still not well understood. Some considerations concerning the boundary between essential and non-essential micro nutrients are discussed.     

Fractionations of rare earth elements in plants and their conceptive model

Fractionations of rare earth elements (REEs) and their mechanisms in soybean were studied through application of exogenous mixed REEs under hydroponic conditions. Significant enrichment of middle REEs (MREEs) and heavy REEs (HREEs) was observed in plant roots and leaves respectively, with slight fractionation between light REEs (LREEs) and HREEs in stems. Moreover, the tetrad effect was observed in these organs. Investigations into REE speciation in roots and in the xylem sap using X-ray absorption spectroscopy (XAS) and nanometer-sized TiO₂ adsorption techniques, associated with other controlled experiments, demonstrated that REE fractionations should be dominated by fixation mechanism in roots caused by cell wall absorption and phosphate precipitation, and by the combined effects of fixation mechanism and transport mechanism in aboveground parts caused by solution complexation by intrinsic organic ligands. A conceptive model was established for REE fractionations in plants based on the above studies.     

稀土元素在小麦体内分配行为的研究

采用水培,土培试验及中子活化分析技术,在作物生长效应曲线研究的基础上,系统地研究了稀土远征顷作物体内的含量、吸收、分布和转移等行为。所获结果表明,名稀土元素在作物体现人的分配行为受生物的内外因素与稀土来源、自身特征和元素间关系的影响,是作物稀土元素分配行为已有研究成果的重要补充与深化,并为土壤施用稀土元素提供促进一步的科学依据。     

Structural differences between light and heavy rare earth elment binding chlorophylls in naturally grown fern Dicranopteris linearis

Chloroplasts and chlorophylls were isolated from the leaves of Dicranopteris linearis, a natural perennial fern sampled at rare earth element (REE) mining areas in the South-Jiangxi region (southern China). The inductively coupled plasma-mass spectrometry (ICP-MS) results indicated that REEs were present in the chloroplasts and chlorophylls of D. linearis. The in vivo coordination environment of light REE (lanthanum) or heavy REE (yttrium) ions in D. linearis chlorophyll-a was determind by the extended X-ray absorption fine structure (EXAFS). Results revealed that there were eight nitrogen atoms in the first coordination shell of the lanthanum atom, whereas there were four nitrogen atoms in the first coordination shell of yttrium. It was postulated that the lanthanum-chlorophyll-a complex might have a double-layer sandwichlike structure, but yttrium-binding chlorophyll-a might be in a single-layer form. Because the content of REE-binding chlorophylls in D. linearis chlorophylls was very low, it is impossible to obtain structural characteristics of REE-binding chlorophylls by direct analysis of the Fourier transform infrared (FTIR) and ultraviolet (UV)-visible spectra of D. linearis chlorophylls. In order to acquire more structural information of REE-binding chlorophyll-a in D. linearis, lanthanum—and yttrium-chlorophyll-a complexes were in vitro synthesized in acetone solution. Element analyses and EXAFS results indicated that REE ions (lanthanum or yttrium) of REE-chlorophyll-a possessed the same coordination environment whether in vivo or in vitro. The FTIR spectra of the REE-chlorophyll-a complexes indicated that REEs were bound to the porphyrin rings of chlorophylls. UV-visible results showed that the intensity ratios of Soret to the Q-band of REE-chlorophyll-a complexes were higher than those of standard chlorophyll-a and pheophytin-a indicating that REE-chlorophyll-a might have a much stronger ability to absorb the ultraviolet light. The MCD spectrum in the Soret band region of lanthanum-chlorophyll-a showed a special peak, but yttrium-chlorophyll-a did not have this special peak, corresponding well to their double-layer and single-layer structure, respectively. Structural differences between lanthanum—and yttrium-chlorophyll-a might result from the difference in ion radius between yttrium and lanthanum. These data might be useful for understanding of both the properties of REE-chlorophyll-a complexes and the physiological roles of REEs in the hyperaccumulator D. linearis.     

Direct Interaction between Terbium Ion and Peroxidase in Horseradish at Different pH Values

Rare earth elements (REEs) entering plant cells can directly interact with peroxidase in plants, which is the structural basis for the decrease in the activity of peroxidase. Different cellular compartments have different pH values. However, little information is available regarding the direct interaction between REEs and peroxidase in plants at different pH values. Here, we investigated the charge distribution on the surface of horseradish peroxidase (HRP) molecule as well as the interaction of terbium ion (Tb³⁺, one type of REEs) and HRP at different pH values. Using the molecular dynamics simulation, we found that when the pH value was from 4.0 to 8.0, a large amount of negative charges were intensively distributed on the surface of HRP molecule, and thus, we speculated that Tb³⁺ with positive charges might directly interact with HRP at pH 4.0–8.0. Subsequently, using ultraviolet-visible spectroscopy, we demonstrated that Tb³⁺ could directly interact with HRP in the simulated physiological solution at pH 7.0 and did not interact with HRP in other solutions at pH 5.0, pH 6.0 and pH 8.0. In conclusion, we showed that the direct interaction between Tb³⁺ and HRP molecule depended on the pH value of cellular compartments.     

A20/AN1 zinc-finger domain-containing proteins in plants and animals represent common elements in stress response

A20/AN1 zinc-finger domain-containing proteins are well characterized in animals, and their role in regulating the immune response is established. Recently, such A20/AN1 zinc-finger proteins have been reported from plants. These plant proteins are involved in stress response, but their exact molecular mechanism of action is yet to be deciphered. Sequence information available in public databases has been used to conduct a survey of A20/AN1 zinc-finger proteins across diverse organisms with a special emphasis on plants. Domain analysis provides some interesting insights into their biological function, the most important being that A20/AN1 zinc-finger proteins could represent common elements of stress response in plants and animals.     

The Rop GTPase: an emerging signaling switch in plants

G proteins are ubiquitous molecular switches in eukaryotic signal transduction, but their roles in plant signal transduction had not been clearly established until recent studies of the plant-specific Rop subfamily of RHO GTPases. Rop participates in signaling to an array of physiological processes including cell polarity establishment, cell growth, morphogenesis, actin dynamics, H₂O₂ generation, hormone responses, and probably many other cellular processes in plants. Evidence suggests that plants have developed unique molecular mechanisms to control this universal molecular switch through novel GTPase-activating proteins and potentially through a predominant class of plant receptor-like serine/threonine kinases. Furthermore, the mechanism by which Rop regulates specific processes may also be distinct from that for other GTPases. These advances have raised the exciting possibility that the elucidation of Rop GTPase signaling may lead to the establishment of a new paradigm for G protein-dependent signal transduction in plants.     

Nitric oxide and nitric oxide synthase activity in plants

Research on NO in plants has gained considerable attention in recent years mainly due to its function in plant growth and development and as a key signalling molecule in different intracellular processes in plants. The NO emission from plants is known since the 1970s, and now there is abundant information on the multiple effects of exogenously applied NO on different physiological and biochemical processes of plants. The physiological function of NO in plants mainly involves the induction of different processes, including the expression of defence-related genes against pathogens and apoptosis/programmed cell death (PCD), maturation and senescence, stomatal closure, seed germination, root development and the induction of ethylene emission. NO can be produced in plants by non-enzymatic and enzymatic systems. The NO-producing enzymes identified in plants are nitrate reductase, and several nitric oxide synthase-like activities, including one localized in peroxisomes which has been biochemically characterized. Recently, two genes of plant proteins with NOS activity have been isolated and characterized for the first time, and both proteins do not have sequence similarities to any mammalian NOS isoform. However, different evidence available indicate that there are other potential enzymatic sources of NO in plants, including xanthine oxidoreductase, peroxidase, cytochrome P450, and some hemeproteins. In plants, the enzymatic production of the signal molecule NO, either constitutive or induced by different biotic/abiotic stresses, may be a much more common event than was initially thought.     

Cytokinins résumé: their signaling and role in programmed cell death in plants

Cytokinins (CKs) are a large group of plant hormones which play a crucial role in many physiological processes in plants. One of the interesting functions of CKs is the control of programmed cell death (PCD). It seems that all CKs-dependent phenomena including PCD are accompanied by special multi-step phosphorelay signaling pathway. This pathway consists of three elements: histidine kinase receptors (HKs), histidine phosphotransfer proteins (HPs) and response regulators (RRs). This review shows the résumé of the latest knowledge about CKs signaling pathways in many physiological processes in plants with special attention paid to PCD process.     

Plant cation/H+ exchangers (CAXs): biological functions and genetic manipulations

Inorganic cations play decisive roles in many cellular and physiological processes and are essential components of plant nutrition. Therefore, the uptake of cations and their redistribution must be precisely controlled. Vacuolar antiporters are important elements in mediating the intracellular sequestration of these cations. These antiporters are energized by the proton gradient across the vacuolar membrane and allow the rapid transport of cations into the vacuole. CAXs (for CAtion eXchanger) are members of a multigene family and appear to predominately reside on vacuoles. Defining CAX regulation and substrate specificity have been aided by utilising yeast as an experimental tool. Studies in plants suggest CAXs regulate apoplastic Ca(2+) levels in order to optimise cell wall expansion, photosynthesis, transpiration and plant productivity. CAX studies provide the basis for making designer transporters that have been used to develop nutrient enhanced crops and plants for remediating toxic soils.     

Proteomic identification of S-nitrosylated proteins in Arabidopsis

Although nitric oxide (NO) has grown into a key signaling molecule in plants during the last few years, less is known about how NO regulates different events in plants. Analyses of NO-dependent processes in animal systems have demonstrated protein S-nitrosylation of cysteine (Cys) residues to be one of the dominant regulation mechanisms for many animal proteins. For plants, the principle of S-nitrosylation remained to be elucidated. We generated S-nitrosothiols by treating extracts from Arabidopsis (Arabidopsis thaliana) cell suspension cultures with the NO-donor S-nitrosoglutathione. Furthermore, Arabidopsis plants were treated with gaseous NO to analyze whether S-nitrosylation can occur in the specific redox environment of a plant cell in vivo. S-Nitrosylated proteins were detected by a biotin switch method, converting S-nitrosylated Cys to biotinylated Cys. Biotin-labeled proteins were purified and analyzed using nano liquid chromatography in combination with mass spectrometry. We identified 63 proteins from cell cultures and 52 proteins from leaves that represent candidates for S-nitrosylation, including stress-related, redox-related, signaling/regulating, cytoskeleton, and metabolic proteins. Strikingly, many of these proteins have been identified previously as targets of S-nitrosylation in animals. At the enzymatic level, a case study demonstrated NO-dependent reversible inhibition of plant glyceraldehyde-3-phosphate dehydrogenase, suggesting that this enzyme could be affected by S-nitrosylation. The results of this work are the starting point for further investigation to get insight into signaling pathways and other cellular processes regulated by protein S-nitrosylation in plants.     

Targeted protein accumulation promoted by autoassembly and its recovery from plant cells

The expression of a fusion protein formed between the avian infectious bronchitis virus M protein and the bacterial enzyme beta-glucuronidase (GUS) in plants promotes the formation of new organization of the endoplasmic reticulum in tobacco plants. This unusual organization of the membranes, never present in nontransformed plants, has been explained by the oligomerization of the GUS domains of the IBVM-GUS fusion proteins. These specific organized membranes could have broad implications for biotechnology since their formation could be used as a mechanism for retaining and accumulating resident proteins in specific and discrete membrane compartments. In this study, we have shown that the unusual organization of native membranes due to overexpression of the IBVM-GUS fusion gene in tobacco transgenic plants and calli is present at higher levels in plant cell suspensions than in plant tissues. In these cell suspensions, IBVM-GUS protein was continuously synthesized and accumulated throughout the cell culture. An enrichment of the chimeric IBVM-GUS protein corresponding to a five-fold increase in the microsomal fractions was achieved and the GUS enzyme did not show any modification on enzyme kinetics. However, the GUS activity could be differentially distributed in the fractions eluted at different pH suggesting differences in the surface topography of histidine residues for this recombinant GUS.     

The use of transgenic plants in the bioremediation of soils contaminated with trace elements

The use of plants to clean-up soils contaminated with trace elements could provide a cheap and sustainable technology for bioremediation. Field trials suggested that the rate of contaminant removal using conventional plants and growth conditions is insufficient. The introduction of novel traits into high biomass plants in a transgenic approach is a promising strategy for the development of effective phytoremediation technologies. This has been exemplified by generating plants able to convert organic and ionic forms of mercury into the less toxic, volatile, elemental mercury, a trait that occurs naturally only in some bacteria and not at all in plants. The engineering of a phytoremediator plant requires the optimization of a number of processes, including trace element mobilization in the soil, uptake into the root, detoxification and allocation within the plant. A number of transgenic plants have been generated in an attempt to modify the tolerance, uptake or homeostasis of trace elements. The phenotypes of these plants provide important insights for the improvement of engineering strategies. A better understanding, both of micronutrient acquisition and homeostasis, and of the genetic, biochemical and physiological basis of metal hyperaccumulation in plants, will be of key importance for the success of phytoremediation.     

The variation of REE (rare earth elements) patterns in soil-grown plants: a new proxy for the source of rare earth elements and silicon in plants

Rare earth elements (REEs) in five species of soil-grown plants (Taxodium japonicum, Populus sieboldii, Sasa nipponica, Thea sinensis and Vicia villosa) and in the soil on which each plant grew were determined with an inductively coupled plasma mass spectrometer (ICP-MS) in order to observe the variation in the distribution of REEs and to elucidate their source in soil-grown plants. The plant samples were divided into root (secondary root and main root), trunk (stem) and leaf; the soils into water soluble (soil_{soluble fraction}), HCl and HNO₃ soluble (soil_{non-silicate fraction}) and HF soluble (soil_{silicate fraction}). The REE abundances of samples were compared using REE patterns where the abundances were normalized to those of a chondrite and plotted on a logarithmic scale against the atomic number. All the plants showed similar REE patterns independent of species and location, and a W-shape variation (W-type tetrad effect) and abundance depletion of cerium (negative Ce anomaly) were found in each REE patterns of plants, more conspicuous tetrad effect being observed in HREE (heavier rare earth elements) region than in LREE (lighter rare earth elements) region. The overall variation of REE patterns of each secondary root was not similar to that of soil_{soluble fraction}, but similar to that of soil_{silicate fraction} except for the tetrad effect and Ce anomaly. The REE patterns can be interpreted by the idea that plants of different species take in REEs and Si from different parts in the soil. The results of this study seem to imply that Sasa nipponica and Vicia villosa take in free REEs and Si rather directly from silicate in the soil, and that a majority of REEs and Si in Taxodium japonicum and Thea sinensis are originated from the soluble fraction in the soil.     

Purification of a plant cell wall fibronectin-like adhesion protein involved in plant response to salt stress

The structural role of extracellular-matrix (ECM) has been recognized in both plants and animals as a support and anchorage-inducing cell behavior. Unlike the animal ECM proteins, the proteins that have been identified in plant ECM have not yet been purified from whole plants and cell wall. As several immunological data indicate the presence of animal ECM-like proteins in plants cell wall, especially under salt stress or water deficit, we propose a protocol to purify a fibronectin-like protein from the cell wall of epicotyls of young germinating peas. The process consists of a combination of gelatin and heparin affinity chromatography, close to the classical one used for human blood plasma fibronectin purification. Proteins with affinity for gelatin and heparin, immunologically related to human fibronectin, are found in the cell wall of epicotyls grown under salt stress or not. Total amount of purified proteins is 3-4 times more enriched in salt stressed epicotyls. SDS-PAGE and Western blot with antibodies directed against human blood plasma fibronectin give evidence that the cell wall proteins purified by gelatin/heparin affinity chromatography are closely related to human fibronectin. The present protocol leads us to purify 17 (control) or 65 (salt stress) micrograms of protein per g of fresh starting material. Our results suggest that plant cell wall proteins can provide better anchorage of the cell to its cell-wall during salt stress or water deficit and could be considered not only as cell adhesion but also as signaling molecules.     

植物镉忍耐的分子机理

Cd是植物非必需的微量元素,对植物有很强的毒性.Cd抑制植物细胞生长,抑制氧化磷酸化,引发氧化胁迫,影响光合作用,损伤核仁和影响质膜ATP酶的活力.一些耐Cd植物通过诱导形成螯合肽、金属硫蛋白、植物应激蛋白等抵御Cd毒,也有的耐Cd植物则通过细胞壁固定、液泡分隔、腺体分泌等途径来抵御Cd毒.植物螯合肽合成酶(PCS)相关的一些基因已得到克隆.金属硫蛋白(MT)的克隆基因导入植物,使植物对Cd毒的抗性增加;植物胁迫蛋白可提高植物对Cd毒的抗性,Zn转运蛋白可运转Cd.修饰基因则通过影响主要基因提高植物对Cd的忍耐能力.野生型植物耐Cd毒是多基因控制的,而植物短期的Cd忍耐,则仅受一个或少数基因控制.