Similar regional effects among local habitats on the structure of tropical reef fish and coral communities

Aim We examined data on corals and reef fishes to determine how particular local habitat types contribute to variation in community structure across regions covering gradients in species richness and how consistent this was over time. Location Great Barrier Reef (GBR), Australia. Methods We compared large‐scale (1300 km), long‐term (11 years) data on fishes and corals that were collected annually at fixed sites in three habitats (inshore, mid‐shelf and outer‐shelf reefs) and six regions (latitudinal sectors) along a gradient of regional species richness in both communities. We used canonical approaches to partition variation in community structure (sites × species abundance data matrices) into components associated with habitat, region and time and Procrustes analyses to assess the degree of concordance between coral and fish community structure. Results Remarkably similar patterns emerged for both fish and coral communities occupying the same sites. Reefs that had similar coral communities also had similar fish communities. The fraction of the community data that could be explained by regional effects, independent of pure habitat effects, was similar in both fish (33%) and coral (36.9%) communities. Pure habitat effects were slightly greater in the fish (31.3%) than in the coral (20.1%) community. Time explained relatively little variation (fish = 7.9%, corals = 9.6%) compared with these two spatial factors. Conclusions Our results indicate either that fish and coral communities were structured in similar ways by processes associated with region, habitat and time, or that the variation in fish community structure tracked variation associated with the coral communities at these sites and thereby reflects an indirect link between the environment and the structure of fish communities mediated by corals. Irrespective of the causes of such commonality, we demonstrate that community structure, not just species richness, can be related to both habitat differences and regional setting simultaneously.     

Coral species richness: ecological versus biogeographical influences

Species richness in communities varies with habitat area, productivity, disturbance level, intensity of species interactions, and regional/historical effects. All of these factors influence coral richness but their effects vary with spatial scale, position on the reef, and regional location. Species richness of corals along depth gradients shows a unimodal, hump-shaped curve that peaks at intermediate depths. Moreover, the peak of the curve is higher in regions with larger species pools. This “regional enrichment” of the local community appears in line transect samples as small as 10 m in length. The pattern suggests that ecological factors operating over scales of tens of meters and regional/historical factors operating over thousands of kilometers can both affect local richness. Regional factors probably include differences in speciation relative to extinction rates among regions and proximity of local sites to richness hotspots. Plausible factors operating at the local scale are species interactions, disturbance, and productivity which combine in different ways to produce the unimodal pattern. Shallow areas support few species because extinction rates are high due to frequent disturbance or because of environmental extremes. In addition, high productivity encourages rapid growth and thus the potential for intense interspecific competition. In areas where branching acroporids are abundant, exclusion by these dominant competitors is possible. Deep areas may be depauperate because few species can tolerate the low light levels found there. Areas of intermediate depth have the richest communities because they are open for colonization by many species and because extinction rates are low. Several theories may explain this “openness” and species persistence: 1. Occasional disturbance coupled with low growth rates results in glacially slow exclusion by the dominant competitor. 2. Aggregation of corals creates spatial variation in the intensity of competition and thus refuges from competition within a spatial landscape. Inferior competitors persist because they are superior at dispersal and refuge colonization. 3. Specialist predators focus on high-density juvenile populations near the parent, creating ecological space for colonization by non-prey. 4. Coral competitive abilities are roughly equal and recruitment into the community is a probabilistic event. The community thus exhibits random drift and exclusion is an extremely lengthy process. Based upon empirical evidence, these theories are listed in order of plausibility, but still need to be rigorously tested. Accepted: 9 September 1999     

Macrobenthic species composition and diversity in the Godthaabsfjord system, SW Greenland

The southwest Greenland coast is made up of large and deep sill fjords. On the shelf, a number of shallow banks separated by deep troughs are located 20–50 km from the coast. We collected three 0.1-m² van Veen grabs at nine stations along a transect spanning from the inner Godthaabsfjord influenced by glaciers, across the shallow Fyllas Bank and out to the slope of the continental shelf at approximately 1,000 m depth. Along this transect, we explored patterns of macrobenthic diversity, species composition, abundance and biomass. The sampled stations were very different in terms of environmental variables, resulting in large differences in species composition primarily related to differences in depth, silt–clay fraction and chl a content of the sediment (BIO-ENV analysis). Habitat differences also reduced species spatial ranges and the majority of species were found at only one (49%) or two (20%) stations and, consequently, species turnover or beta diversity was high and correlated to differences in depth, silt–clay fraction and median sediment grain size. Species richness and diversity were lowest in sites exposed to sediment disturbance: near the glaciers in the inner fjord (physical disturbance by mineral sedimentation) and at selected stations on the shelf (bioturbation by burrowing sand eel). Alpha diversity and richness were only weakly correlated to environmental parameters, indicating that alpha richness and diversity are influenced by several factors or that relationships are non-linear as was found for species richness and silt–clay fraction.     

Increased diversity and concordant shifts in community structure of coral‐associated Symbiodiniaceae and bacteria subjected to chronic human disturbance

Both coral‐associated bacteria and endosymbiotic algae (Symbiodiniaceae spp.) are vitally important for the biological function of corals. Yet little is known about their co‐occurrence within corals, how their diversity varies across coral species, or how they are impacted by anthropogenic disturbances. Here, we sampled coral colonies (n = 472) from seven species, encompassing a range of life history traits, across a gradient of chronic human disturbance (n = 11 sites on Kiritimati [Christmas] atoll) in the central equatorial Pacific, and quantified the sequence assemblages and community structure of their associated Symbiodiniaceae and bacterial communities. Although Symbiodiniaceae alpha diversity did not vary with chronic human disturbance, disturbance was consistently associated with higher bacterial Shannon diversity and richness, with bacterial richness by sample almost doubling from sites with low to very high disturbance. Chronic disturbance was also associated with altered microbial beta diversity for Symbiodiniaceae and bacteria, including changes in community structure for both and increased variation (dispersion) of the Symbiodiniaceae communities. We also found concordance between Symbiodiniaceae and bacterial community structure, when all corals were considered together, and individually for two massive species, Hydnophora microconos and Porites lobata, implying that symbionts and bacteria respond similarly to human disturbance in these species. Finally, we found that the dominant Symbiodiniaceae ancestral lineage in a coral colony was associated with differential abundances of several distinct bacterial taxa. These results suggest that increased beta diversity of Symbiodiniaceae and bacterial communities may be a reliable indicator of stress in the coral microbiome, and that there may be concordant responses to chronic disturbance between these communities at the whole‐ecosystem scale.     

Phytoplankton indicator taxa for reference conditions in Northern and Central European lowland lakes

Phytoplankton data from 606 lakes were used to characterize indicator taxa of near-pristine reference conditions in clearwater and humic lowland lakes of Northern and Central Europe. Reference lakes were selected based on low pressure from catchment land-use, low population density and the absence of point sources. Reference lakes had low phytoplankton biomass and taxa richness compared to non-reference lakes. In low alkalinity lakes of Northern Europe, the reference communities had high biomass proportions of chrysophytes and low proportions of cyanobacteria; in the Central European high alkalinity lakes, the biomass was distributed more evenly among algal groups. Indicator species analysis and similarity analysis listed 5–29 taxa indicating reference conditions. Indicator taxa differed especially between the low alkalinity and the high alkalinity lakes, but there were also country-specific differences. Most common indicator taxa for the northern reference lakes were chrysophytes (e.g. Bitrichia, Dinobryon). In the Central European reference lakes, diatoms (e.g. Cyclotella) were more characteristic. Despite the differences, there was a general finding that taxa present in reference lakes were often also present in non-reference lakes, but typically in lower biomass proportions; another characteristic of the reference communities is the absence of many taxa typically found in non-reference lakes.     

Habitat Differences in Marine Invasions of Central California

We carried out a two-part investigation that revealed habitat differences in marine invertebrate invasions. First, we compared invasion levels of hard vs soft substrata in Elkhorn Slough, an estuary in Central California, by comparing abundance and richness of native vs exotic species in quantitative samples from each habitat type. Our results revealed that the hard substrata were much more heavily invaded than the soft substrata. Nearly all the hard substrata in Elkhorn Slough, as in most estuaries along the Pacific coast of North America, are artificial (jetties, rip-rap, docks). Some exotic species may by chance be better adapted to this novel habitat type than are natives. Two major vectors responsible for marine introductions, oyster culturing and ship-hull fouling, are also more likely to transport species associated with hard vs soft substrata. Secondly, we compared estuarine and open coast invasion rates. We examined species richness in Elkhorn Slough and adjacent rocky intertidal habitats along the Central California coast. The absolute number of exotic species in the estuary was an order of magnitude higher than along the open coast (58 vs 8 species), as was the percentage of the invertebrate fauna that was exotic (11% vs 1%). Estuaries on this coast are geologically young, heavily altered by humans, and subject to numerous transport vectors bringing invasive propagules: all these factors may explain why they are strikingly more invaded than the open coast. The finding that the more species rich habitat – the open coast – is less invaded is in contrast to many terrestrial examples, where native and exotic species richness appear to be positively correlated at a broad geographic scale.     

Spatial patterns in benthic communities and the dynamics of a mosaic ecosystem on the Great Barrier Reef,Australia

The benthic communities of the Great Barrier Reef (GBR) have been characterized as a mosaic with patches at scales of tens to hundreds of kilometres formed by clusters of reefs with comparable environmental settings and histories of disturbance. We use data sets of changes in cover of abundant benthic organisms to examine the relationship between community composition and the dynamics of this mosaic. Our data were compiled from seven annual video surveys of permanent transects on the north-east flanks of up to 52 reefs at different shelf positions throughout most of the GBR. Classification analysis of these data sets identified three distinct groups of reefs, the first dominated by poritid hard corals and alcyoniid soft corals, the second by hard corals of the genus Acropora, and the third by xeniid soft corals. These groups underwent different amounts of change in cover during the period of our study. As acroporan corals are fast growing but susceptible to mortality due to predators and wave action, the group of reefs dominated by this genus displayed rapid rates of growth and loss of cover. In contrast, cover in the remaining groups changed very slowly or remained stable. Some evidence suggests that competition for space may limit growth of acroporan corals and thus rates of change in the group dominated by xeniid soft corals. These contrasting patterns imply that susceptibility to, and recovery from, disturbances such as cyclones, predators, and bleaching events will differ among these groups of reefs.     

Polychaete distribution on the southwestern Atlantic continental shelf

Diversity and distribution of polychaetes on the southeastern Brazilian Shelf (SBS) adjacent to the city of Santos were studied. The study area is situated in the vicinity of Santos Bay with its estuarine complex and other small rivers along the coast. A total of 16,274 specimens belonging to 214 polychaete species were found at 21 sampling stations during two different periods. Two communities occur along the shelf and were related firstly to sediment characteristics. Prionospio dayi (Spionidae) was dominant in the inner shelf community that was characterized by well-sorted, very fine sand. The outer shelf community was found in muddy sediments with high organic matter content and was dominated by subsurface deposit feeders, like Petersenaspis capillata (Sternaspidae) and Leitoscoloplos kerguelensis (Orbiniidae), and by large carnivores such as Aglaophamus sp. (Nephtyidae) and Sigambra sp. (Pilargidae). A transition zone of mixed sediments presenting high diversity and richness was found between these communities. The characteristics of bottom water and food quality in the sediment were important to divide the inner shelf into two sub-areas. Nearshore sampling stations (A group) were more influenced by freshwater input, mainly during summer. This influence is not conspicuous at stations close to 30?m depth (B group). However the effect of South Atlantic Central Water mass (SACW) intrusion on the benthic system was observed on the inner shelf – B group during the summer. The summer intrusion of SACW onto the inner shelf may explain the higher quality of organic matter that resulted in an increase in polychaete abundance and richness.     

Effects of disturbance frequency,intensity, and area on assemblages of stream macroinvertebrates

Disturbance frequency, intensity, and areal extent may influence the effects of disturbance on biological communities. Furthermore, these three factors may have interacting effects on biological diversity. We manipulated the frequency, intensity, and area of disturbance in a full-factorial design on artificial substrates and measured responses of benthic macroinvertebrates in a northern Vermont stream. Macroinvertebrate abundance was lower in all disturbance treatments than in the undisturbed control. As in most other studies in streams, species density (number of species/sample) was lower in disturbed treatments than in undisturbed controls. However, species density is very sensitive to total abundance of a sample, which is usually reduced by disturbance. We used a rarefaction method to compare species richness based on an equivalent number of individuals. In rarefied samples, species richness was higher in all eight disturbed treatments than in the undisturbed control, with significant increases in species richness for larger areas and greater intensities of disturbance. Increases in species richness in response to disturbance were consistent within patches, among patches with similar disturbance histories, and among patches with differing disturbance histories. These results provide some support for Huston’s dynamic-equilibrium model but do not support the intermediate-disturbance hypothesis. Our analyses demonstrate that species richness and species density can generate opposite patterns of community response to disturbance. The interplay of abundance, species richness, and species density has been neglected in previous tests of disturbance models. Received: 20 July 1999 / Accepted: 26 January 2000     

Birds as marine–terrestrial linkages in sub-polar archipelagic systems: avian community composition, function and seasonal dynamics in the Cape Horn Biosphere Reserve (54–55°S), Chile

Marine environments are known to affect adjacent terrestrial biotic communities. In South America’s sub-Antarctic archipelago, birds are the most abundant and diverse terrestrial vertebrate assemblage. We hypothesized that birds would reflect a marine influence that would gradually decrease inland, expecting to find greater species richness, abundance, and biomass near the sea with decreases toward the island interior. We seasonally compared these parameters, with identified indicator species and assessed functional groups at 0, 150, and 300 m from the coast. Unexpectedly, we found a marked marine (0) and terrestrial (150–300) patterns for avian assemblages, rather than a gradient. In addition, seasonal patterns were warm (spring–summer) and cold (autumn–winter). The only parameter that displayed a true gradient was avian biomass in spring. During the cold season, higher values were observed in all variables for coastal assemblages, compared to inland sites. In the warm season, abundance and richness of coastal and terrestrial assemblages were similar, owing to migratory species. Milvago chimango was the only species abundant and frequent in both terrestrial and coastal systems, thereby indicating potential as a marine–terrestrial vector. Functionally, coastal assemblages were conformed of herbivores, carnivores, and scavengers, while terrestrial communities were made up of omnivores and insectivores. We conclude that the sea coast is a unique habitat in this archipelago, providing refuge for both marine and terrestrial sub-Antarctic birdlife particularly in the cold season. The relevance of the land/sea ecotone is poorly known, but important is given to high demand for the installation of salmon aquaculture facilities along the southern Chilean coastline.     

Recovery without resilience: persistent disturbance and long-term shifts in the structure of fish and coral communities at Tiahura Reef, Moorea

Disturbances have a critical effect on the structure of natural communities. In this study long-term changes were examined in the reef community at Tiahura Reef, on the northern coast of Moorea, which had been subject to many and varied disturbances over the last 25 years. Tiahura Reef was subject to an outbreak of crown-of-thorns starfish (Acanthaster planci) in 1980–1981, causing significant declines in the abundance of scleractinian corals and butterflyfishes. By 2003, the abundance of corals and butterflyfishes had returned to former levels, but despite this apparent recovery, the species composition of coral communities and butterflyfish assemblages was very different from those recorded in 1979. Ongoing disturbances (including further outbreaks of crown-of-thorns starfish, cyclones, and coral bleaching events) appear to have prevented recovery of many important coral species (notably, Acropora spp.), which has had subsequent effects on the community structure of coral-feeding butterflyfishes. This study shows that recurrent disturbances may have persistent effects on the structure and dynamics of natural communities.     

Reassessing Neotropical angiosperm distribution patterns based on monographic data: a geometric interpolation approach

Monographic data rely on specimens deposited in herbaria and museums, which have been thoroughly revised by experts. However, monographic data have been rarely used to map species richness at large scale, mainly because of the difficulties caused by spatially heterogeneous sampling effort. In this paper we estimate patterns of species richness and narrow endemism, based on monographic data of 4,055 Neotropical angiosperm species. We propose a geometric interpolation method to derive species ranges at a 1° grid resolution. To this we apply an inverse distance-weighted summation scheme to derive maps of species richness and endemism. In the latter we also adjust for heterogeneous sampling effort. Finally, we test the robustness of the interpolated species ranges and derived species richness by applying the same method but using a leave-one-out-cross-validation (LOOCV). The derived map shows four distinct regions of elevated species richness: (1) Central America, (2) the Northern Andes, (3) Amazonia and (4) the Brazilian Atlantic coast (‘Mata Atlantica’). The region with the highest estimated species richness is Amazonia, with Central America following closely behind. Centers of narrow endemism are located over the entire Neotropics, several of them coinciding with regions of elevated species richness. Sampling effort has a minor influence on the interpolation of overall species richness, but it substantially influences the estimation of regions of narrow endemism. Thus, in order to improve maps of narrow endemism and resulting conservation efforts, more collection and identification activity is required.     

Congruent patterns of connectivity can inform management for broadcast spawning corals on the Great Barrier Reef

Connectivity underpins the persistence and recovery of marine ecosystems. The Great Barrier Reef (GBR) is the world's largest coral reef ecosystem and managed by an extensive network of no‐take zones; however, information about connectivity was not available to optimize the network's configuration. We use multivariate analyses, Bayesian clustering algorithms and assignment tests of the largest population genetic data set for any organism on the GBR to date (Acropora tenuis, >2500 colonies; >50 reefs, genotyped for ten microsatellite loci) to demonstrate highly congruent patterns of connectivity between this common broadcast spawning reef‐building coral and its congener Acropora millepora (~950 colonies; 20 reefs, genotyped for 12 microsatellite loci). For both species, there is a genetic divide at around 19°S latitude, most probably reflecting allopatric differentiation during the Pleistocene. GBR reefs north of 19°S are essentially panmictic whereas southern reefs are genetically distinct with higher levels of genetic diversity and population structure, most notably genetic subdivision between inshore and offshore reefs south of 19°S. These broadly congruent patterns of higher genetic diversities found on southern GBR reefs most likely represent the accumulation of alleles via the southward flowing East Australia Current. In addition, signatures of genetic admixture between the Coral Sea and outer‐shelf reefs in the northern, central and southern GBR provide evidence of recent gene flow. Our connectivity results are consistent with predictions from recently published larval dispersal models for broadcast spawning corals on the GBR, thereby providing robust connectivity information about the dominant reef‐building genus Acropora for coral reef managers.     

Spatial and temporal patterns of species richness in a riparian landscape

Aim To test for control of vascular plant species richness in the riparian corridor by exploring three contrasting (although not mutually exclusive) hypotheses: (1) longitudinal patterns in riparian plant species richness are governed by local, river‐related processes independent of the regional species richness, (2) riparian plant species richness is controlled by dispersal along the river (longitudinal control), and (3) the variation in riparian plant species richness mirrors variation in regional richness (lateral control). Location The riparian zones of the free‐flowing Vindel River and its surrounding river valley, northern Sweden. Methods We used data from three surveys, undertaken at 10‐year intervals, of riparian reaches (200‐m stretches of riverbank) spanning the entire river. In addition, we surveyed species richness of vascular plants in the uplands adjacent to the river in 3.75‐km² large plots along the same regional gradient. We explored the relationship between riparian and upland flora, and various environmental variables. We also evaluated temporal variation in downstream patterns of the riparian flora. Results Our results suggest that local species richness in boreal rivers is mainly a result of local, river‐related processes and dispersal along the corridor. The strongest correlation between species richness and the environment was a negative one between species number and soil pH, but pH varied within a narrow range. We did not find evidence for a correlation between species richness on regional and local scales. We found that the local patterns of species richness for naturally occurring vascular plants were temporally variable, probably in response to large‐scale disturbance caused by extreme floods. Most previous studies have found a unimodal pattern of species richness with peaks in the middle reaches of a river. In contrast, on two of three occasions corresponding to major flooding events, we found that the distribution of species richness of naturally occurring vascular plants resembled that of regional diversity: a monotonic decrease from headwater to coast. We also found high floristic similarity between the riparian corridor and the surrounding landscape. Main conclusions These results suggest that local processes control patterns of riparian species richness, but that species composition is also highly dependent on the regional species pool. We argue that inter‐annual variation in flood disturbance is probably the most important factor producing temporal variability of longitudinal species richness patterns.     

Predicting Coral Species Richness: The Effect of Input Variables,Diversity and Scale

Coral reefs are facing a biodiversity crisis due to increasing human impacts, consequently, one third of reef-building corals have an elevated risk of extinction. Logistic challenges prevent broad-scale species-level monitoring of hard corals; hence it has become critical that effective proxy indicators of species richness are established. This study tests how accurately three potential proxy indicators (generic richness on belt transects, generic richness on point-intercept transects and percent live hard coral cover on point-intercept transects) predict coral species richness at three different locations and two analytical scales. Generic richness (measured on a belt transect) was found to be the most effective predictor variable, with significant positive linear relationships across locations and scales. Percent live hard coral cover consistently performed poorly as an indicator of coral species richness. This study advances the practical framework for optimizing coral reef monitoring programs and empirically demonstrates that generic richness offers an effective way to predict coral species richness with a moderate level of precision. While the accuracy of species richness estimates will decrease in communities dominated by species-rich genera (e.g. Acropora), generic richness provides a useful measure of phylogenetic diversity and incorporating this metric into monitoring programs will increase the likelihood that changes in coral species diversity can be detected.     

Demersal fish diversity of the isolated Rockall plateau compared with the adjacent west coast shelf of Scotland

This study compares the diversity of the demersal fish assemblage of an isolated shelf sea, the Rockall plateau, with that of the nearest adjacent continental shelf sea ecosystem, the west coast of Scotland. Bottom trawl surveys were carried out between 1986 and 2008 on the Rockall plateau and the adjacent shelf sea to the west of Scotland. All demersal fish were identified and counted. Analyses of species richness and abundance were undertaken. The fish assemblage of the Rockall plateau was less diverse and the proportional representation of species was markedly different. A number of species common at Rockall were rare on the west coast shelf and, in general, there were fewer common and temporally stable species and more rare and ephemeral species at Rockall. Some species absent from Rockall have life‐history stages associated with inshore habitat. The Rockall plateau fish assemblage can be described as an impoverished subset of the north‐west European shelf sea fish assemblage. It is likely that there are constraints on diversity imposed by the relatively small area of the Rockall plateau and its degree of isolation by depth, distance and ocean currents. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2011, 104 , 138–147.     

Spatial Biodiversity Patterns of Madagascar's Amphibians and Reptiles

Madagascar has become a model region for testing hypotheses of species diversification and biogeography, and many studies have focused on its diverse and highly endemic herpetofauna. Here we combine species distribution models of a near-complete set of species of reptiles and amphibians known from the island with body size data and a tabulation of herpetofaunal communities from field surveys, compiled up to 2008. Though taxonomic revisions and novel distributional records arose since compilation, we are confident that the data are appropriate for inferring and comparing biogeographic patterns among these groups of organisms. We observed species richness of both amphibians and reptiles was highest in the humid rainforest biome of eastern Madagascar, but reptiles also show areas of high richness in the dry and subarid western biomes. In several amphibian subclades, especially within the Mantellidae, species richness peaks in the central eastern geographic regions while in reptiles different subclades differ distinctly in their richness centers. A high proportion of clades and subclades of both amphibians and reptiles have a peak of local endemism in the topographically and bioclimatically diverse northern geographic regions. This northern area is roughly delimited by a diagonal spanning from 15.5°S on the east coast to ca. 15.0°S on the west coast. Amphibian diversity is highest at altitudes between 800–1200 m above sea-level whereas reptiles have their highest richness at low elevations, probably reflecting the comparatively large number of species specialized to the extended low-elevation areas in the dry and subarid biomes. We found that the range sizes of both amphibians and reptiles strongly correlated with body size, and differences between the two groups are explained by the larger body sizes of reptiles. However, snakes have larger range sizes than lizards which cannot be readily explained by their larger body sizes alone. Range filling, i.e., the amount of suitable habitat occupied by a species, is less expressed in amphibians than in reptiles, possibly reflecting their lower dispersal capacity. Taxonomic composition of communities assessed by field surveys is largely explained by bioclimatic regions, with communities from the dry and especially subarid biomes distinctly differing from humid and subhumid biomes.     

Functional response of lignicolous fungal guilds to bark beetle deforestation

Conifer-dominated forests in the northern hemisphere are prone to large-scale natural disturbances, yet our understanding of their effects beyond changes in species diversity is limited. Bark beetle disturbances provide dead wood for lignicolous fungal guilds and increase insolation but also desiccation. We investigated whether species richness of these guilds increases and functional diversity decreases after bark beetle disturbance, which would promote through habitat filtering the coexistence of species adapted to harsh conditions, i.e. light stress for lichens and substrate desiccation for wood-inhabiting fungi.We sampled epixylic and epiphytic lichens (primary producers) and wood-inhabiting fungi (mainly wood decomposers, some form ectomycorrhizas) in the Bohemian Forest (Long Term Ecological Research – LTER – Site Bavarian Forest National Park), an area in Central Europe most heavily affected by the bark beetle Ips typographus, on undisturbed plots and disturbed plots with spruce (Picea abies) dieback 8 years ago. We analysed species diversity, functional diversity (optimized by phylogeny), and functional compositions.Species richness of lichens but not that of wood-inhabiting fungi was higher on disturbed plots than on undisturbed plots. Community compositions of both guilds differed considerably on disturbed and undisturbed plots. On both types of plots, lichen communities were clustered according to functional diversity, which indicated habitat filtering, and fungal communities were overdispersed, which indicated competition. Disturbance increased the strength of these two patterns only slightly and was significant only for fungi. Single-trait analysis revealed changes in the functional composition; on disturbed plots, lichenous species with larger and more complex growth forms and fungi with large, perennial fruit bodies were favoured. Although the forest canopy changed tremendously because of the bark beetle disturbance, the most important driver of lichen and fungal diversity and mean trait assemblages seemed to be the enrichment of dead wood. The changes in insolation and moisture did not act as habitat filters for either guild. This indicated that the assembly patterns of lichen and fungal communities in coniferous forests are not affected by stand-replacing disturbances in contrast to the predictions for other disturbance regimes.     

Distribution, host range and large-scale spatial variability in black band disease prevalence on the Great Barrier Reef, Australia

The prevalence and host range of black band disease (BBD) was determined from surveys of 19 reefs within the Great Barrier Reef Marine Park, Australia. Prevalence of BBD was compared among reefs distributed across large-scale cross-shelf and long-shelf gradients of terrestrial or anthropogenic influence. We found that BBD was widespread throughout the Great Barrier Reef (GBR) and was present on 73.7% of the 19 reefs surveyed in 3 latitudinal sectors and 3 cross-shelf positions in the summer of 2004. Although BBD occurred on all mid-shelf reefs and all but one outer-shelf reefs, overall prevalence was low, infecting on average 0.09% of sessile cnidarians and 0.1% of scleractinian corals surveyed. BBD affected approximately 7% of scleractinian taxa (25 of approximately 350 GBR hard coral species) and 1 soft coral family, although most cases of BBD were recorded on branching Acropora species. Prevalence of BBD did not correlate with distance from terrestrial influences, being highest on mid-shelf reefs and lowest on inshore reefs (absent from 66%, n = 6, of these reefs). BBD prevalence was consistently higher in all shelf positions in the northern (Cooktown/Lizard Island) sector, which is adjacent to relatively pristine catchments compared to the central (Townsville) sector, which is adjacent to a more developed catchment. BBD cases were clustered within reefs and transects, which was consistent with local dispersal of pathogens via currents, although the spread of BBD was not dependent on the density or cover of any of the coral taxa examined. In combination, these results suggest that BBD is part of the natural ecology of coral assemblages of the GBR, and its prevalence is relatively unaffected by terrestrial influences on the scales characteristic of cross-shelf gradients.