Mechanisms of seed harvest by heteromyid rodents: soil texture effects on harvest rate and seed size selection

Summary Several lines of evidence show that soil texture plays an important role in the distribution of desert-dwelling heteromyid rodents. This is not surprising, since texture influences the energetic cost of digging burrows and of scratching at the soil surface to harvest buried seeds. Texture also may influence the efficiency with which seeds can be separated from the soil particles with which they are mixed. To explore mechanisms of particle separation by foraging heteromyids we measured seed harvest rates and size selection in the laboratory for a variety of seed sizes and soil textures. Harvest rate declined with increasing soil coarseness, and the preference for seeds of intermediate size that was apparent in fine soil disappeared when seeds were mixed with soil slightly coarser than the preferred seed size. In addition, there was evidence that particle separation efficiency is sensitive to the relative sizes of seeds and soil. A discontinity in the function relating harvest rate to soil texture occurred at finer soil textures for small seeds than for large seeds, suggesting that harvest techniques change once soil particle diameter equals or exceeds that of seeds. These results are consistent with the hypothesis that heteromyids use a combination of gravity-and rake-sorting mechanisms for particle separation.     

Characterization of soil properties associated with type-I fairy ring symptoms in turfgrass

Fairy ring is a frequently reported disease of turfgrasses worldwide, and necrotic or severely injured grass are observed in those turf sites exhibiting type-I fairy ring symptoms. The objective of this research was to characterize soil chemical and physical properties at two soil sampling depths (0.5 cm and 3.0 cm) at a turfgrass site exhibiting type-I fairy ring symptoms. Soil samples were obtained from a perennial ryegrass (Lolium perenne L.) golf course fairway at one sampling date in the summer when environmental conditions were most conducive to the appearance of severe type-I fairy ring symptoms. At both soil depths, soil analysis indicated that concentrations of ammonium-nitrogen, potassium, and sulfur were statistically higher in soil underlying necrotic or bare zones versus soil in healthy turfgrass zones. At both soil depths, soil electrical conductivity was statistically higher, and volumetric soil water content was statistically lower in necrotic zones versus soil under healthy turfgrass. At both soil depths, total nitrogen, magnesium, calcium, cation exchange capacity, and organic matter content were not statistically different among necrotic and healthy turfgrass zones. Soil pH was statistically higher in the necrotic zone versus soil under healthy turfgrass at only the 3.0 cm soil sampling depth. Comparing soil properties within the necrotic zone, only potassium and electrical conductivity was statistically higher at the 0.5 cm depth compared to the 3.0 cm depth. Although most soil information was considered very similar at both sampling depths, soil sampling at the 3.0 cm depth would be a more practical or easier method for turfgrass managers. At either soil sampling depth, the necrotic zones of type-I fairy ring areas in turfgrass were most likely associated with a combination of direct and indirect effects of the basidiomycete fungi on soil chemical and physical properties in the turfgrass root zone. Presented at the International Conference on Biohydrology, Prague, Czech Republic, 20–22 September 2006.     

高原鼢鼠干扰下高寒草甸大型土壤动物多样性对环境因子的响应

为研究高寒草甸大型土壤动物群落组成和分布对环境因子的响应,选取祁连山东段的甘肃省天祝县高原鼢鼠典型分布区域,以鼠丘密度代表干扰强度设置4个干扰区。调查各干扰区植被群落特征、土壤理化性质、大型土壤动物类群组成及其数量,采用约束性排序方法分析环境因子对大型土壤动物类群组成和分布的影响。结果表明：高原鼢鼠干扰下高寒草甸大型土壤动物优势类群为瓦娄蜗牛科、象甲科和短角亚目幼虫;极重度干扰区大型土壤动物类群的丰度、丰富度、Shannon指数显著高于重度干扰区（P<0.05）;多元回归分析表明大型土壤动物类群丰度、丰富度和Shannon指数与土壤温度呈显著负相关（P<0.05）,丰富度与土壤含水量呈显著负相关（P<0.05）,丰度与土壤紧实度呈显著负相关（P<0.05）,丰富度和Shannon指数与植物Shannon指数呈显著负相关（P<0.05）;冗余分析和偏冗余分析表明,土壤温度、紧实度和含水量是影响高寒草甸大型土壤动物类群组成和分布的主要环境因子。     

Biodiversity of soil-inhabiting fungi

This survey is concerned only with filamentous fungi living in the soil layer. The observed diversity of soil fungi largely depends on the method used and the numbers of isolates obtained. Particle-plating usually yields higher numbers of taxa than dilution plating. The Centraalbureau voor Schimmelcultures (CBS) preserves a great diversity of soil fungi. The CBS database contained 2,210 species of soil fungi in 2001, an estimated 70% of the known species available in culture. Thus, the current estimate for described culturable soil fungi is approximately 3,150 species, many of which have a cosmopolitan distribution. Adding the ca. 150 spp. of nonculturable Glomerales results in 3,300 species of currently known soil fungi. Molecular studies in such groups as Fusarium, Trichoderma, Penicillium, and Aspergillus are finding a number of more narrowly distributed cryptic species. Thus the number of species of soil fungi is expected to be considerably higher than the 3300 species currently known.     

Edaphic limitations to growth and photosynthesis in Sierran and Great Basin vegetation

Summary Soils derived from hydrothermally altered andesite support unique communities of Sierran conifers (Pinus ponderosa Laws. and P. jeffreyi Grev. and Balf.) amongst sagebrush (Artemisia tridentata Nutt.) vegetation in the western Great Basin. Plants grown in soil derived from hydrothermally altered bedrock had lower growth rates, total biomass, and net photosynthetic rates than plants grown in soil derived from unaltered andesite of the same formation. Total dry mass was 10 to 28% lower for conifers grown in altered soil whereas dry mass of Artemisia tridentata and Bromus tectorum L. was reduced by over 90%. Results from a nutrient amendment experiment indicated that low phosphorus was the dominant limitation in altered soil, and phosphorus-deficiency affected growth primarily by limiting leaf area development rather than direct inhibition of photosynthesis. The proportionately greater reduction of biomass for Artemisia and Bromus grown in altered soil supports our hypothesis that Great Basin vegetation is excluded from altered soil by intolerance to nutrient deficiency. The Sierran conifers growing on this rock type are therefore free of competition for water with Great Basin vegetation and are able to persist in an exceptionally dry climate.     

Categories of vesicular-arbuscular mycorrhizal dependency of host species

Summary Brassica nigra and selected species of Leucaena and Sesbania were used as indicator hosts in a greenhouse experiment designed to establish distinct categories of mycorrhizal dependence. The plants were grown in an oxisol with different concentrations of established soil solution P in the presence or absence of the vesicular-arbuscular mycorrhizal (VAM) fungus Glomus aggregatum. The extent to which the plant species depended on the fungus for dry matter production diminished with increased concentrations of soil solution P, but the magnitude of this decrease varied from species to species. Five distinct mycorrhizal categories are proposed based on the differences observed, ranging from non-dependent to very highly dependent. The critical soil solution P concentrations that were useful for separating host species into distinct VAM-dependency groups were 0.02 and 0.2 mg/l. Species differing in their mycorrhizal dependency differed with respect to the soil solution P concentration required for the expression of maximum VAM effectiveness, the degree to which increasing concentrations of P depressed VAM infection and the pattern of immobile nutrient accumulation.Contribution from the Hawaii Institute of Tropical Agriculture and Human Resources Journal Series No. 3547     

Effects of Biological Soil Crusts on Seed Bank, Germination and Establishment of Two Annual Plant Species in the Tengger Desert (N China)

The presence of biological soil crusts can affect the germination and survival of vascular plants, but the reasons are not well investigated. We have conducted a field investigation and greenhouse experiments to test the effect of crusts on two desert annual plants, which occur on the stabilized dunes of the Tengger Desert in N China. The results showed that biological soil crusts negatively influenced the seed bank of Eragrostis poaeoides and Bassia dasyphylla. The important effect of biological soil crusts on seed germination and establishment were performed indirectly through reducing the amount of germinating seeds. Field investigation and experimental results with regard to the seed bank indicated that higher seedling density was found in disturbed crust soil and bare soil surface than in intact crust soils. Greenhouse experiments showed that the effects of biological soil crusts on germination and establishment of the two plants are not obvious in moist condition, while disturbed crusts are more favorable to seed germination in dry treatment. Significant differences in biomass were found between disturbed crust soil and bare soil. Survival and growth of the two annual plants were enhanced in both algal and moss crusts during the season of rainfall or in moist environment, but crusts did not affect seedling survival in the dry period. The small seeded E. poaeoides has higher germination than larger-seeded B. dasyphylla in crust soils, but B. dasyphylla has a relatively higher survival rate than E. poaeoides in crust soils.     

Germination and seed water status of four grasses on moss-dominated biological soil crusts from arid lands

Biological soil crusts dominated by drought-tolerant mosses are commonly found through arid and semiarid steppe communities of the northern Great Basin of North America. We conducted growth chamber experiments to investigate the effects of these crusts on the germination of four grasses: Festuca idahoensis, Festuca ovina, Elymus wawawaiensis and Bromus tectorum. For each of these species, we recorded germination time courses on bare soil and two types of biological soil crusts; one composed predominantly of the tall moss Tortula ruralis and the other dominated by the short moss Bryum argenteum. On the short-moss crust, the final germination percentage was about half of that on bare soil. Also, the mean germination time was 4 days longer on short-mosses than on bare soil. In contrast to the short-moss crust, the tall-moss crust did not reduce the final germination percentage but increased the mean germination time. Similar results were observed in the four grasses studied. To investigate the mechanism by which moss crusts affected germination, we analyzed the water status of seeds on bare soil and moss crusts. Six days after seeding, the water content of seeds on bare soil was approximately twice that of seeds on tall- or short-moss crust. Analysis of the time course of changes in seed weight and water potential in Bromus tectorum revealed that overtime seeds on tall mosses reached higher water content than those on short mosses. The increase in the water content of seeds on tall mosses occurred as the seeds gradually fell through the moss canopy. Taken together, our results indicate that biological soil crusts with distinct structural characteristics can have different effects on seed germination. Furthermore, this study revealed that a biological soil crust dominated by short mosses had a negative effect on seed water status and significantly reduced seed germination.     

Evaluation of the symbiotic nitrogen-fixing potential of soils by direct microbiological means

A method for estimating the nitrogen-fixing capacity of a population of rhizobia resident in soil is presented. legume test plants, growing under microbiologically-controlled conditions in test tubes packed with a vermiculite substrate moistened with a nitrogen-free plant nutrient solution, are inoculated directly with a suspension of the soil under examination. Rhizobia in the soil nodulate the test plants, and the amount of foliage dry matter produced in the 28 days after inoculation is regarded as an index of their effectiveness. An inoculum of at least 30, and preferably 100, rhizobia is needed to ensure that nitrogen fixation is not masked by delayed nodulation. The new method is tentatively described as the ‘whole-soil inoculation’ technique. Appraisals were made withTrifolium subterraneum L. andRhizobium trifolii and withMedicago sativa L. andR. meliloti. Soil-borne pathogens did not interfere with plant growth. The whole-soil inoculation technique was less tedious and time-consuming than an alternative method which involved extracting representative isolates from the soil and testing their effectiveness individually, and appeared to give more realistic values for the nitrogen-fixing capacity of the soil as a whole. Used in association with a field experiment, the whole-soil inoculation technique confirmed microbiologically that there had been an agronomic response to surface application of inoculant to poorly-nodulatedT. subterraneum pasture. It is submitted that this technique for determining the effectiveness of rhizobia in soil, combined with a plant-infection method for counting rhizobia, can be a reliable guide to the need for inoculation in the field.     

Germination and seedling establishment of two annual grasses on lichen-dominated biological soil crusts

Biological soil crusts dominated by lichens are common components of shrub-steppe ecosystems in northwestern US. We conducted growth chamber experiments to investigate the effects of these crusts on seed germination and initial seedling establishment of two annual grasses; the highly invasive exotic Bromus tectorum L. and the native Vulpia microstachys Nutt. We recorded germination time courses on bare soil and two types of biological soil crusts; one composed predominantly of the lichen Diploschistes muscorum (Scop.) R. Sant. (lichen crust) and the other comprised of an assortment of lichens and mosses (mixed crust). Final germination on the lichen crust for both grass species was about a third of that on the bare soil surface. Mean germination time (MGT) was 3–4 days longer on the lichen crust compared with the bare soil. In contrast, there was no difference in germination percentage or MGT between the mixed crust and bare soil, and results were similar for both grass species. For both species, root penetration of germinating seeds on the lichen crust was lower than on the bare soil or mixed crust surfaces. The combined effects of the lichen crust on germination and root penetration resulted in an overall reduction in seedling establishment of 78% for V. microstachys and 85% for B. tectorum relative to the bare soil treatment. Our results clearly demonstrate that lichen-dominated biological soil crust can inhibit germination and root penetration, but the extent of these effects depends on the composition of the crust. Responsible Editor: Tibor Kalapos     

Effect of five tree crops and a cover crop in multi-strata agroforestry at two fertilization levels on soil fertility and soil solution chemistry in central Amazonia

The spatio-temporal patterns of soil fertility and soil solution chemistry in a multi-strata agroforestry system with perennial crops were analysed as indicators for the effects of crop species and management measures on soil conditions under permanent agriculture in central Amazonia. The study was carried out in a plantation with locally important tree crop species and a leguminous cover crop at two fertilization levels on a xanthic Ferralsol. Soil fertility to 2 m soil depth was evaluated 3.5 years after the establishment of the plantation, and soil solution chemistry at 10, 60 and 200 cm soil depth was monitored over 2 years. Several soil fertility characteristics exhibited spatial patterns within the multi-strata plots which reflected the differing properties of the plant species and their management, including the fertilizer input. Significant differences between species could be detected to 150 cm depth, and between fertilization treatments to 200 cm depth. Favourable effects on nutrient availability in the soil were found for annatto (Bixa orellana) (P, K) and cupuaçu (Theobroma grandiflorum) (Ca, Mg) in comparison with peach palm (Bactris gasipaes) and Brazil nut (Bertholletia excelsa). Nutrient concentrations of the soil solution showed pronounced fluctuations in the topsoil, corresponding to fertilizer applications. Large nutrient concentrations in the soil solution were accompanied by increased concentrations of aluminium and low pH values, caused by exchange reactions between fertilizer and sorbed acidity and reinforced by the acidifying effect of nitrification. The soil solution under the leguminous cover crop Pueraria phaseoloides had relatively large N concentrations during periods when those under the tree crops were small, and this could partly explain why no yield responses to N fertilization were observed at this site.     

Soil mycoflora from trufflè native areas of Saudi Arabia

Soil fungi of areas in the North-Eastern region of Saudi Arabia where truffles are native were surveyed. Forty-three species of fungi belonging to twenty genera were isolated. Most were recovered from soils underneath or around truffle ascocarps: thirty species from soil under the surface of Tirmania nivea ascocarps, twenty-four from Terfezia boudieri soil and twenty species each from Tirmania pinoyi and Terfezia claveryi soils. Rhizosphere soil of Helianthemum lippi, on the other hand, yielded twenty-four fungal species while only fourteen fungal species were found in soil without vegetation. The total counts of fungi/g soil were highest in soils from the under surface of truffles, followed by rhizosphere soil, with the lowest in soils without vegetation.     

Photosynthetic responses of birch and alder saplings grown in a free air CO2 enrichment system in northern Japan

Though birch and alder are the common pioneer tree species which dominate in northeast Asia, little is known about the effects of the predicted increase in atmospheric CO₂ concentrations ([CO₂]) upon their photosynthesis in field conditions. To investigate this, we grew 2-year-old saplings of three Betulaceae species (Betula platyphylla var. japonica Hara, Betula maximowicziana Regel, and Alnus hirsuta Turcz) for 2 years in a free air CO₂ enrichment system in northern Japan. Since the effect of high [CO₂] is known to depend on soil conditions, we evaluated the responses in two soils which are widely distributed in northern Japan: infertile and immature volcanic ash (VA) soil, and fertile brown forest (BF) soil. For B. platyphylla, photosynthetic down-regulation occurred in both soils, but for B. maximowicziana, down-regulation occurred only in VA soil. The explanation is reduced nitrogen and Rubisco content in the leaf. For A. hirsuta, down-regulation occurred only in BF soil because of the accumulation of starch in foliage, which restricts CO₂ diffusion inside the chloroplast. The higher photosynthetic rate of A. hirsuta in infertile VA soil could be due to the sink for photosynthates in the N₂-fixing symbiont. These three species are all able to down-regulate at high [CO₂]. However, it is possible that A. hirsuta would dominate in VA soil and B. maximowicziana in BF soil in the early stages of forest succession in a CO₂-enhanced world.     

Food choice of Antarctic soil arthropods clarified by stable isotope signatures

Antarctic soil ecosystems are amongst the most simplified on Earth and include only few soil arthropod species, generally believed to be opportunistic omnivorous feeders. Using stable isotopic analyses, we investigated the food choice of two common and widely distributed Antarctic soil arthropod species using natural abundances of ¹³C and ¹⁵N and an isotope labelling study. In the laboratory we fed the isotomid springtail Cryptopygus antarcticus six potential food sources (one algal species, two lichens and three mosses). Our results showed a clear preference for algae and lichens rather than mosses. These results were corroborated by field data comparing stable isotope signatures from the most dominant cryptogams and soil arthropods (C. antarcticus and the oribatid mite Alaskozetes antarcticus). Thus, for the first time in an Antarctic study, we present clear evidence that these soil arthropods show selectivity in their choice of food and have a preference for algae and lichens above mosses.     

Earthworm invasion into previously earthworm-free temperate and boreal forests

Earthworms are keystone detritivores that can influence primary producers by changing seedbed conditions, soil characteristics, flow of water, nutrients and carbon, and plant–herbivore interactions. The invasion of European earthworms into previously earthworm-free temperate and boreal forests of North America dominated by Acer, Quercus, Betula, Pinus and Populus has provided ample opportunity to observe how earthworms engineer ecosystems. Impacts vary with soil parent material, land use history, and assemblage of invading earthworm species. Earthworms reduce the thickness of organic layers, increase the bulk density of soils and incorporate litter and humus materials into deeper horizons of the soil profile, thereby affecting the whole soil food web and the above ground plant community. Mixing of organic and mineral materials turns mor into mull humus which significantly changes the distribution and community composition of the soil microflora and seedbed conditions for vascular plants. In some forests earthworm invasion leads to reduced availability and increased leaching of N and P in soil horizons where most fine roots are concentrated. Earthworms can contribute to a forest decline syndrome, and forest herbs in the genera Aralia, Botrychium, Osmorhiza, Trillium, Uvularia, and Viola are reduced in abundance during earthworm invasion. The degree of plant recovery after invasion varies greatly among sites and depends on complex interactions with soil processes and herbivores. These changes are likely to alter competitive relationships among plant species, possibly facilitating invasion of exotic plant species such as Rhamnus cathartica into North American forests, leading to as yet unknown changes in successional trajectory.     

Some Approaches to the Selective Isolation of Actinomycetes of the Genus Actinomadura from Soil

Some approaches to the selective isolation of actinomycetes of the genus Actinomadura from soil are described. The approach that involves the thermal treatment of soil samples and their plating onto Gauze 1 medium with the antibiotics nystatin, nalidixic acid, and rubomycin provides for an increased amount of actinomaduras isolated from the soil actinomycete complex and for a decreased amount of streptomycetes.     

高寒草甸黄帚橐吾种群根际/非根际土壤可培养微生物群落特征

黄帚橐吾（Ligularia virgaurea）是高寒草甸常见的毒杂草,被认为是指示一个地区草地植被退化的重要物种,研究其根际/非根际土壤微生物在不同海拔梯度上的群落特征具有重要意义。以甘南州高寒草甸不同海拔梯度黄帚橐吾根际/非根际土壤可培养微生物为研究对象,采用稀释涂布平板法和最大可能数法（MPN）测定了土壤微生物的数量及土壤理化因子的变化。结果表明：细菌在微生物总数中占比最大,根际微生物数量随海拔升高呈先增加后减小的变化,非根际则表现为递增的趋势,微生物功能群在根际和非根际土壤中均逐渐增加;根际土壤的微生物和功能群数量均高于非根际土壤。RDA分析发现,土壤温度、有机碳、电导率、pH、全氮、全磷、速效氮及脲酶对根际/非根际土壤微生物数量及功能群变化影响较大。通径分析可知：根际土壤中,细菌和真菌受速效氮和有机碳影响较大,放线菌主要受土壤温度和电导率的影响;根际土壤固氮菌和氨化细菌决策系数速效氮 > 有机碳 > 全氮;根际和非根际土壤中硝化细菌的影响因子各不相同,根际土壤决策系数最大和最小分别为全磷和全氮,非根际则是pH和脲酶。     

Detection and quantification of Entomophaga maimaiga resting spores in forest soil using real-time PCR

Environmental sampling to monitor entomopathogen titre in forest soil, a known reservoir of insect pathogens such as fungi and viruses, is important in the evaluation of conditions that could trigger epizootics and in the development of strategies for insect pest management. Molecular or PCR-based analysis of environmental samples provides a sensitive method for strain- or species-based detection, and real-time PCR, in particular, allows quantification of the organism of interest. In this study we developed a DNA extraction method and a real-time PCR assay for detection and quantification of Entomophaga maimaiga (Zygomycetes: Entomophthorales), a fungal pathogen of the gypsy moth, in the organic layer of forest soil. DNA from fungal resting spores (azygospores) in soil was extracted using a detergent and bead mill homogenization treatment followed by purification of the crude DNA extract using Sephadex–polyvinylpolypyrrolidone microcolumns. The purification step eliminated most of the environmental contaminants commonly co-extracted with genomic DNA from soil samples but detection assays still required the addition of bovine serum albumin to relieve PCR inhibition. The real-time PCR assay used primers and probe based on sequence analysis of the nuclear ribosomal ITS region of several E. maimaiga and two E. aulicae strains. Comparison of threshold cycle values from different soil samples spiked with E. maimaiga DNA showed that soil background DNA and remaining co-extracted contaminants are critical factors determining detection sensitivity. Based on our results from comparisons of resting spore titres among different forest soils, estimates were best for organic soils with comparatively high densities of resting spores.     

樟子松人工林营建对土壤颗粒组成变化的影响

植被恢复是退化生态系统的主要恢复措施,也是人类改善区域生态环境较为重要和直接的活动。目前,针对不同植被恢复方式对干旱半干旱地区土壤理化性质及生物特征开展了大量研究。然而,关于科尔沁沙地樟子松人工林营建对土壤颗粒组成变化的影响却鲜有报道。因此,以辽宁省章古台地区不同生长阶段(包括幼龄林、中龄林、成熟林和过熟林)的20块樟子松人工林样地为研究对象(以临近的7块天然草地为对照),研究了沙地樟子松人工林营建对0—100 cm土层土壤颗粒组成变化的影响。结果表明:沙质草地营建樟子松人工林后,不同土层土壤细颗粒(<0.05 mm)含量均呈增加趋势,并且在0—10 cm层增加趋势明显,随土层深度增加土壤细颗粒增加量逐渐降低(除幼龄林外),但樟子松林地土壤颗粒组成仍以砂粒为主,土壤粘粒和粉粒含量极低(仅占5%左右)。随着樟子松人工林林龄的增加,土壤细颗粒变化量在0—10 cm层逐渐升高,而在10—100 cm层并无显著变化趋势。土壤细颗粒含量的变化在10—100 cm层与土壤含水量呈显著正相关,在0—10、20—40 cm和80—100 cm层与土壤全钾极显著负相关,在20—60 cm层与土壤有...