Mineral Radioactivity in Sands as a Mechanism for Fixation of Organic Carbon on the Early Earth

Irradiation of organic molecules by mineral radioactivity is a feasible alternative to cosmic irradiation to precipitate solid organic carbon-rich matter on the early Earth. Radioactive (uranium- and thorium-rich) minerals have been concentrated at the Earth's surface, and accumulated accretionary coatings of carbon due to irradiation, since early Archean times. The organic accretion process could have occurred at the surface or in the sub-surface, and is independent of a terrestrial or extraterrestrial source for the carbon.     

The evolution of photosynthesis…again?

‘Replaying the tape’ is an intriguing ‘would it happen again?’ exercise. With respect to broad evolutionary innovations, such as photosynthesis, the answers are central to our search for life elsewhere. Photosynthesis permits a large planetary biomass on Earth. Specifically, oxygenic photosynthesis has allowed an oxygenated atmosphere and the evolution of large metabolically demanding creatures, including ourselves. There are at least six prerequisites for the evolution of biological carbon fixation: a carbon-based life form; the presence of inorganic carbon; the availability of reductants; the presence of light; a light-harvesting mechanism to convert the light energy into chemical energy; and carboxylating enzymes. All were present on the early Earth. To provide the evolutionary pressure, organic carbon must be a scarce resource in contrast to inorganic carbon. The probability of evolving a carboxylase is approached by creating an inventory of carbon-fixation enzymes and comparing them, leading to the conclusion that carbon fixation in general is basic to life and has arisen multiple times. Certainly, the evolutionary pressure to evolve new pathways for carbon fixation would have been present early in evolution. From knowledge about planetary systems and extraterrestrial chemistry, if organic carbon-based life occurs elsewhere, photosynthesis—although perhaps not oxygenic photosynthesis—would also have evolved.     

A proposal concerning the origin of life on the planet earth

Summary The widely accepted Oparin thesis for the origin and early evolution of life seems sufficiently far from the true state of affairs as to be considered incorrect. It is proposed that life on earth actually arose in the planet's atmosphere, however an atmosphere very different from the present one. Because of an extremely warm surface, the early earth may have possessed no liquid surface water, its water being partitioned between a molten crust and a fairly dense atmosphere. Early preliving systems are taken to arise in the droplet phase in such an atmosphere. The early earth, which resembled Venus then and to some extent now, underwent a transition to its present condition largely as a result of the evolution of methanogenic metabolism.     

Exploration of deep intraterrestrial microbial life: current perspectives

Intraterrestrial life has been found at depths of several thousand metres in deep sub-sea floor sediments and in the basement crust beneath the sediments. It has also been found at up to 2800-m depth in continental sedimentary rocks, 5300-m depth in igneous rock aquifers and in fluid inclusions in ancient salt deposits from salt mines. The biomass of these intraterrestrial organisms may be equal to the total weight of all marine and terrestrial plants. The intraterrestrial microbes generally seem to be active at very low but significant rates and several investigations indicate chemolithoautotrophs to form a chemosynthetic base. Hydrogen, methane and carbon dioxide gases are continuously generated in the interior of our planet and probably constitute sustainable sources of carbon and energy for deep intraterrestrial biosphere ecosystems. Several prospective research areas are foreseen to focus on the importance of microbial communities for metabolic processes such as anaerobic utilisation of hydrocarbons and anaerobic methane oxidation.     

Copper and the biological evolution

Copper is contained in a number of enzymes and proteins. A remarkable feature is that except for the electron-carrying blue copper proteins (azurin and plastocyanin) and copper-containing cytochrome c oxidase found in some cyanobacteria and some aerobic bacteria, all copper enzymes and proteins are found only in eukaryotes. In the early and middle precambrian period when the stationary oxygen pressure in the atmosphere was quite low, copper existed as either metallic or cuprous sulfides which are very insoluble in aqueous media; thus copper might have been unavailable to organisms. The time when copper became Cu(II) upon rise of the atmospheric oxygen pressure and thus became available to organisms seems to be in the middle of Proteozoic era when first eukaryotic organisms seem to have appeared on earth. Thus copper may be considered to be an indicator element for the atmospheric evolution (switching from anoxygenic to oxygenic) and the evolution of higher organisms (eukaryotes).     

Effect of hydrogen and carbon dioxide partial pressures on growth and sulfide production of the extremely thermophilic archaebacterium Pyrodictium brockii

The effect of hydrogen and carbon dioxide partial pressure on the growth of the extremely thermophilic archaebacterium Pyrodictium brockii at 98 degrees C was investigated. Previous work with this bacterium has been done using an 80:20 hydrogen-carbon dioxide gas phase with a total pressure of 4 atm; no attempt has been made to determine if this mixture is optimal. It was found in this study that reduced hydrogen partial pressures affected cell yield, growth rate, and sulfide production. The effect of hydrogen partial pressure on cell yield and growth rate was less dramatic when compared to the effect on sulfide production, which was not found to be growth-associated. Carbon dioxide was also found to affect growth but only at very low partial pressures. The relationship between growth rate and substrate concentration could be correlated with a Monod-type expression for either carbon dioxide or hydrogen as the limiting substrate. The results from this study indicate that a balance must be struck between cell yields and sulfide production in choosing an optimal hydrogen partial pressure for the growth of P. brockii.     

The early atmosphere: a new picture

Over the last several years, many of the fundamental ideas concerning the composition and chemical evolution of the Earth's early atmosphere have changed. While many aspects of this subject are clouded--either uncertain or unknown, a new picture is emerging. We are just beginning to understand how astronomical, geochemical, and atmospheric processes each contributed to the development of the gaseous envelope around the third planet from the sun some 4.6 billion years ago and how that envelope chemically evolved over the history of our planet. Simple compounds in that gaseous envelope, energized by atmospheric lightning and/or solar ultraviolet radiation, formed molecules of increasing complexity that eventually evolved into the first living systems on our planet. This process is called "chemical evolution" and immediately preceded biological evolution; once life developed and evolved, it began to alter the chemical composition of the atmosphere that provided the very essence of its creation. Photosynthetic organisms which have the ability to biochemically transform carbon dioxide and water to carbohydrates, which they use for food, produce large amounts of molecular oxygen (O2) as a by-product of the reaction. Atmospheric oxygen photochemically formed ozone, which absorbs ultraviolet radiation from the sun and shields the Earth's surface from this biologically lethal radiation. Once atmospheric ozone levels increased sufficiently, life could leave the safety of the oceans and go ashore for the first time. Throughout the history of our planet, there has been strong interaction between life and the atmosphere. Understanding our cosmic roots is particularly relevant as we embark on a search for life outside the Earth. At this very moment, several radio telescopes around the world are searching for extraterrestrial intelligence (SETI).     

Response of Early Cretaceous carbonate platforms to changes in atmospheric carbon dioxide levels

During the Late Barremian and Early Aptian (about 120 million years ago) intense volcanic degassing and extremely rapid release of methane hydrates contained in marine sediments added high amounts of carbon to the ocean and atmosphere, and resulted most probably in rising atmospheric carbon dioxide pressure. In order to document the response of the shallow water carbonate-producing communities to this pronounced disturbance of the carbon cycle we studied a Late Barremian to Early Aptian neritic carbonate succession deposited on the northern Tethyan shelf (Swiss Alps). The sedimentological and stable carbon and oxygen isotope records of two sections located along a N–S transect from proximal to more distal shelf environments were investigated. The sediments correspond to outer-, mid-, and inner-ramp deposits of a homoclinal carbonate ramp. Vertical facies variations within the two studied sections feature three progradation phases of the platform. A highly resolved correlation of the shelf sediments with a pelagic succession from the Southern Alps (Northern Italy) is based on both δ¹³C stratigraphy and biostratigraphy, and indicates that the drowning of the Helvetic carbonate platform coincided with a pronounced calcification crisis of calcareous nannofossils. The biocalcification crisis started before but culminated during the Aptian methane event recorded in a negative carbon-isotope spike. We propose that increased carbon dioxide concentrations in oceans and atmosphere related to volcanic activity and to sudden methane release reduced the marine calcium carbonate oversaturation and the calcification potential of benthic and planktonic organisms. Carbonate-producing shallow water communities on platforms and ramps suffering from additional environmental stress such as extreme temperatures or high nutrient levels could not survive during times of rising sea level, and, as a consequence, carbonate platforms drowned.     

Benthic macroinvertebrate assemblages of coastal and continental streams and large rivers of southwestern British Columbia, Canada

In southwestern British Columbia (BC, Canada) and within a relatively small geographic area, lotic environments range from streams in coastal rainforests, to streams in arid continental grasslands, to very large rivers. Little is known about the invertebrate communities in large rivers in general, or in the streams of continental BC. The purpose of this study was to determine whether the benthic invertebrate community structure changes spatially between small coastal and small interior streams; between small streams versus large rivers; and whether changes in the benthic community are related to the environmental conditions. Kicknet samples and environmental data were collected from three coastal streams, three continental streams and two large rivers (discharge of 781 and 3620 m³/s, respectively). The large river sites had low invertebrate abundance, species richness and diversity, relative to the small streams. The coastal streams had the highest species richness and the continental streams had the highest invertebrate abundance. A number of taxa were specific to each class of stream. Invertebrate abundance decreased with river size, and increased with elevation, pH, conductivity, alkalinity, NO₂NO₃-N, total Kejldahl nitrogen and percent carbon in suspended solids.     

Late paleozoic atmospheres and biotic evolution

The latter half of the Paleozoic era is marked by notable evolutionary advances, followed by the greatest of all mass extinctions and the subsequent establishment of Mesozoic‐Cenozoic faunas of very different aspect. Current models suggest marked changes in concentration of oxygen and carbon dioxide in the Paleozoic atmosphere. Atmospheric oxygen is thought to have increased from 15% in the mid‐Devonian to near 35% by the end of the Carboniferous, followed by a decline to 17% near the end of the Permian. Atmospheric carbon dioxide was near 0.5% in the early Paleozoic, declining to less than 0.3% in the Devonian, and then more steeply downward to a minimum near 0.04% at the end of the Carboniferous. The principal causes of these changes were the advent and expansion of land plants, deposition of carbonates and continental weathering. Notwithstanding quantitative uncertainties, it seems clear that a major pulse of high oxygen concentration and associated shifts in carbon dioxide characterized the late Paleozoic atmosphere. Atmospheres with such different compositions have markedly different physical characteristics. These changes have major implications for the physiologies of contemporary organisms. The fossil records of various taxa indicate dramatic changes in the biosphere that coincide in time with the inferred changes in composition of the atmosphere. Major changes in phenotype observed in numerous lineages of animals and plants, including accelerated radiations in fresh water and on the land, are inferred to have occurred in response to these changes in the atmosphere. The morphologies, physiologies, and inferred behavior of many organisms preserved in the fossil record are in good accord with expectations based on hyperoxic, low carbon dioxide conditions of the Carboniferous atmosphere and with a return to lower oxygen levels by the end of the Permian.     

暖温带落叶阔叶林碳循环的初步估算

 森林生态系统碳循环过程与大气中二氧化碳含量有密切的关系,直接影响着大气成分的组成,进而对全球气候变化有重要影响。以我国暖温带落叶阔叶林生态系统近10年的定位研究为基础,初步建立了该类生态系统碳循环数值模式。结果表明：暖温带落叶阔叶林典型生态系统每年从外界主要是大气中吸收的碳是10.3 t·hm-2·a-1,植物呼吸释放到大气中的碳通量为5.5 t·hm-2·a-1。森林植物干物质积存的碳量为4.8 t·hm-2·a-1,通过凋落物分解释放到大气中的碳通量为2.46 t·hm-2·a-1。森林同化的碳绝大部分以活生物呼吸和凋落物分解的形式释放到大气中去了,存留在活生物体和凋落物中的很少。通过对碳现存量的研究发现,所研究的森林生态系统碳现存量为165.05 t·hm-2,其中活生物体碳现存量为61.2 t·hm-2,死生物体碳现存量为104.05 t·hm-2 (包括土壤中碳),土壤碳现存量为96 t·hm-2。土壤碳储量占总碳储量的58%,土壤是该地区森林生态系统主要的碳库,森林生态系统土壤中碳储量的变化必然引起整个区域碳储量整体动态的变化。     

海洋生态系统固碳能力估算方法研究进展

气候变化受到全球关注,大气中CO2含量与气候变化息息相关。海洋是地球上最大的活跃碳库,在气候变化中扮演着举足轻重的作用。定量估算海洋中碳元素的吸收、转移、埋藏速率在全球碳循环及全球气候变化研究中有重要意义。目前,海洋固碳能力估算研究包括:利用海-气界面CO2分压差法估算海洋海-气界面CO2交换通量,根据海水中叶绿素含量建立的生态学数理模型法估算真光层浮游生物的初级生产力,234Th—238U不平衡法估算POC输出通量,210Pb定年法估算有机碳沉积通量。但迄今为止的研究工作尚有一定局限性,碳在大气—海水—沉积物3种介质间交换通量间相互影响的研究较少,海洋中碳垂直传输过程的主要影响因素和关键控制因子尚不明确,在海洋生态系统固碳能力估算方法方面国内外还没有统一的规范和标准。为进一步完善海洋生态系统固碳能力的估算方法,今后的工作应注重海洋固碳整套观测技术、分析和估算方法研究,并建立海洋碳汇估算指标体系、指标标准体系、以及评价标准体系,为我国的碳"减排"、"增汇"国家需求提供技术支持。     

Loss and reappearance of gap junctions in regenerating liver

Changes in intercellular junctional morphology associated with rat liver regeneration were examined in a freeze-fracture study. After a two-thirds partial hepatectomy, both gap junctions and zonulae occludentes were drastically altered. Between 0 and 20 h after partial hepatectomy, the junctions appeared virtually unchanged. 28 h after partial hepatectomy, however, the large gap junctions usually located close to the bile canaliculi and the small gap junctions enmeshed within the strands of the zonulae occudentes completely disappeared. Although the zonulae occludentes bordering the bile canaliculi apparently remained intact, numerous strands could now be found oriented perpendicular to the canaliculi. In some instances, the membrane outside the canaliculi was extensively filled with isolated junctional strands, often forming very complex configurations. About 40 h after partial hepatectomy, very many small gap junctions reappeared in close association with the zonulae occludentes. Subsequently, gap junctions increased in size and decreased in number until about 48 h after partial hepatectomy when gap junctions were indistinguishable in size and number from those of control animals. The zonulae occludentes were again predominantly located around the canalicular margins. These studies provide further evidence for the growth of gap junctions by the accretion of particles and of small gap junctions to form large maculae.     

Amino Acid Formation in Gas Mixtures by High Energy Particle Irradiation

Amino acids were formed from carbon monoxide, nitrogen and water, which are possible constituents of the primitive earth's atmosphere, by irradiation with high energy particles (components of cosmic rays). Glycine yield was proportional to the total energy deposited to the gas mixture, and its G-value was as high as 0.02 when the carbon monoxide/nitrogen ratio was 1. Based on an estimate of the effective energies of various types of energy sources available in the primitive earth's atmosphere for amino acid synthesis, it is suggested that cosmic rays were one of the most important energy sources for the synthesis of amino acids on the primitive earth.     

Gas metabolism in ovine rumen cultures on a nitrogen-deficient medium.

Inocula of rumen fluid from sheep were grown on a medium of low nitrogen content under an oxygen-free atmosphere containing N2. The cultures produced methane and carbon dioxide. Hydrogen gas was utilized and the partial pressure of N2 decreased by 24% in 48 h. Assuming this N2 to have been reduced to metabolically available nitrogenous compounds, these account for about 0.2% of the sheep's daily need.     

Molecular phylogenetic evidence for ancient divergence of lizard taxa on either side of Wallace's Line

Wallace's Line, separating the terrestrial faunas of South East Asia from the Australia-New Guinea region, is the most prominent and well-studied biogeographical division in the world. Phylogenetically distinct subgroups of major animal and plant groups have been documented on either side of Wallace's Line since it was first proposed in 1859. Despite its importance, the temporal history of fragmentation across this line is virtually unknown and the geological foundation has rarely been discussed. Using molecular phylogenetics and dating techniques, we show that the split between taxa in the South East Asian and the Australian-New Guinean geological regions occurred during the Late Jurassic to Early Cretaceous in two independent lizard clades. This estimate is compatible with the hypothesis of rifting Gondwanan continental fragments during the Mesozoic and strongly rejects the hypothetical origin of various members of the Australian-New Guinean herpetofauna as relatively recent invasions from South East Asia. Our finding suggests an ancient fragmentation of lizard taxa on either side of Wallace's Line and provides further evidence that the composition of modern global communities has been significantly affected by rifting and accretion of Gondwanan continental plates during the Middle to Late Mesozoic.     

Cometary origin of carbon,nitrogen and water on the Earth

Two independent assumptions are substantiated; firstly, that the Earth accreted from dust particles that were hot enough not to contain any volatiles; secondly, that after the accretion was finished, all the volatiles of the biosphere, including the atmosphere and the oceans, were brought by a cometary bombardment.The first assumption is based on the empirical evidence that the planets originated from minor bodies. These minor bodies were generated by accumulation of fine dust particles, which sedimented from the gas of the solar nebula. We will demonstrate that, when the particles from the Earth's zone were separated from the nebular gas, they were close to 1000 K and at a thermochemical equilibrium with this gas. This implies that almost all carbon, nitrogen and water remained in the gas phase, respectively as CO, N₂ and steam. Since there was no volatile left in the minor bodies, they could produce neither atmosphere nor oceans.The second assumption is based on the existence of the giant planets in the outer reaches of the solar system. Over there the solar nebula was very cold; the minor bodies were generated by accumulation of frosty particles and became cometary nuclei containing a large amount of ice and volatile stuff. When the giant planets' embryos reached a mass of 10 to 20 terrestrial masses, the orbits of billions of minor icy bodies were perturbed enough to send some of them to the inner solar system. A model shows that the icy bodies which hit the Earth are more than enough to explain the whole biosphere, including the atmosphere and the oceans.     

Sulfur,ultraviolet radiation,and the early evolution of life

The present biosphere is shielded from harmful solar near ultraviolet (UV) radiation by atmospheric ozone. We suggest here that elemental sulfur vapor could have played a similar role in an anoxic, ozone-free, primitive atmosphere. Sulfur vapor would have been produced photochemically from volcanogenic SO₂ and H₂S. It is composed of ring molecules, primarily S₈, that absorb strongly throughout the near UV, yet are expected to be relatively stable against photolysis and chemical attack. It is also insoluble in water and would thus have been immune to rainout or surface deposition over the oceans. The concentration of S₈ in the primitive atmosphere would have been limited by its saturation vapor pressure, which is a strong function of temperature. Hence, it would have depended on the magnitude of the atmospheric greenhouse effect. Surface temperatures of 45 °C or higher, corresponding to carbon dioxide partial pressures exceeding 2 bars, are required to sustain an effective UV screen. Two additional requirements are that the ocean was saturated with sulfite and bisulfite, and that linear S₈ chains must tend to reform rings faster than they are destroyed by photolysis. A warm, sulfur-rich, primitive atmosphere is consistent with inferences drawn from molecular phylogeny, which suggest that some of the earliest organisms were thermophilic bacteria that metabolized elemental sulfur.     

First-principles investigation of the interaction of gold and palladium with armchair carbon nanotube

In this paper, we investigate the adsorption mechanisms at the interface between carbon nanotubes and metal electrodes that can influence the Schottky barrier (SB). We developed a theoretical model based on the first-principles density functional theory for the interaction of an armchair single-wall carbon nanotube (SWNT) with either Au(111) or Pd(111) surface. We considered the side-wall contact by modelling the full SWNT as well as the end-contact geometry using the graphene ribbon model to mimic the contact with very large diameter nanotubes. Strong interaction has been found for the Pd–SWNT interface where the partial density of states (DOS) shows that d-orbitals of palladium are dominant at the Fermi energy so that the hybrid Pd-orbitals have the correct symmetry to overlap with π-electrons and form covalent bonds. The SWNT can only be physisorbed on the gold surface for which the contribution to the DOS of the d-orbitals is very low. Moreover, the filling of antibonding states makes the Au–SWNT bond unstable. The average and ‘atom to atom’ energy barriers at the interface have been evaluated. The matching of open-edge carbon dimers with metal lattice in the end-contact geometry is more likely for large diameter SWNTs and this makes lower the SB at the interface.     

Population genetics reveals origin and number of founders in a biological invasion

Propagule pressure is considered the main determinant of success of biological invasions: when a large number of individuals are introduced into an area, the species is more likely to establish and become invasive. Nevertheless, precise data on propagule pressure exist only for a small sample of invasive species, usually voluntarily introduced. We studied the invasion of the American bullfrog, Rana catesbeiana, into Europe, a species that is considered a major cause of decline for native amphibians. For this major invader with scarce historical data, we used population genetics data (a partial sequence of the mitochondrial cytochrome b gene) to infer the invasion history and to estimate the number of founders of non-native populations. Based on differences between populations, at least six independent introductions from the native range occurred in Europe, followed by secondary translocations. Genetic diversity was strongly reduced in non-native populations, indicating a very strong bottleneck during colonization. We used simulations to estimate the precise number of founders and found that most non-native populations derive from less than six females. This capability of invasion from a very small number of propagules challenges usual management strategies; species with such ability should be identified at an early stage of introduction.